ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name baet102f11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_195751.1| Oryza sativa (japonica cultivar-group) unknown ... 66 1e-07
2gb|AC131374.1| Oryza sativa (japonica cultivar-group) chromosome... 66 1e-07
3gb|AC091749.8| Oryza sativa chromosome 10 BAC OSJNBb0008A05 geno... 66 1e-07
4dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 66 1e-07
5dbj|AK104034.1| Oryza sativa (japonica cultivar-group) cDNA clon... 66 1e-07
6dbj|AK071458.1| Oryza sativa (japonica cultivar-group) cDNA clon... 66 1e-07
7dbj|AK070152.1| Oryza sativa (japonica cultivar-group) cDNA clon... 66 1e-07
8gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 66 1e-07
9gb|AY596576.1| Saccharum officinarum clone SCCCLR1065E11, comple... 62 2e-06
10gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 60 7e-06
11gb|AC104179.1| Genomic sequence for Oryza sativa, Nipponbare str... 60 7e-06
12dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 60 7e-06
13gb|AE017353.1| Cryptococcus neoformans var. neoformans JEC21 chr... 50 0.007
14ref|XM_568337.1| Cryptococcus neoformans var. neoformans JEC21 h... 50 0.007
15ref|XM_568339.1| Cryptococcus neoformans var. neoformans JEC21 c... 50 0.007
16gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete... 48 0.026
17ref|XM_710271.1| Candida albicans SC5314 hypothetical protein (C... 46 0.10
18ref|XM_710206.1| Candida albicans SC5314 hypothetical protein (C... 46 0.10
19gb|AC090436.37| Chlamydomonas reinhardtii clone cr-3h1, complete... 46 0.10
20gb|AC090434.43| Chlamydomonas reinhardtii clone cr-1j6, complete... 46 0.10
21emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome comple... 46 0.10
22gb|AY298951.1| Chlamydomonas reinhardtii long flagella (LF1) gen... 44 0.40
23gb|CP000058.1| Pseudomonas syringae pv. phaseolicola 1448A, comp... 42 1.6
24emb|CT025793.2| Acinetobacter baumannii str. AYE. Genomics of Mu... 42 1.6
25gb|AF156744.1| Frankia sp. FE39 glutamine synthetase (glnA) gene... 40 6.3
26gb|AF156746.1| Frankia sp. FE46 glutamine synthetase (glnA) gene... 40 6.3
27gb|AF156745.1| Frankia sp. FE245 glutamine synthetase (glnA) gen... 40 6.3
28gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence 40 6.3
29ref|XM_469361.1| Oryza sativa (japonica cultivar-group), mRNA 40 6.3
30ref|XM_583697.2| PREDICTED: Bos taurus similar to grancalcin (LO... 40 6.3
31ref|XM_001004847.1| PREDICTED: Mus musculus hypothetical protein... 40 6.3
32gb|AY295124.1| Anotrichium yagii photosystem I P700 apoprotein A... 40 6.3
33gb|AY295123.1| Anotrichium yagii photosystem I P700 apoprotein A... 40 6.3
34gb|AY295122.1| Anotrichium tenue photosystem I P700 apoprotein A... 40 6.3
35gb|AY295121.1| Anotrichium tenue photosystem I P700 apoprotein A... 40 6.3
36gb|AY295120.1| Anotrichium elongatum photosystem I P700 apoprote... 40 6.3
37gb|AY295119.1| Anotrichium crinitum photosystem I P700 apoprotei... 40 6.3
38gb|AC120922.4| Rattus norvegicus 9 BAC CH230-104J1 (Children's H... 40 6.3
39gb|AC137998.2| Oryza sativa chromosome 3 BAC OSJNBa0010B01 genom... 40 6.3
40gb|AC095563.7| Rattus norvegicus 9 BAC CH230-7G11 (Children's Ho... 40 6.3
41emb|BX640449.1| Bordetella bronchiseptica strain RB50, complete ... 40 6.3
42emb|BX640434.1| Bordetella parapertussis strain 12822, complete ... 40 6.3
43emb|BX640421.1| Bordetella pertussis strain Tohama I, complete g... 40 6.3
44gb|AE012137.1| Xanthomonas campestris pv. campestris str. ATCC 3... 40 6.3
45gb|M97656.1|RATSR Rattus norvegicus somatostatin receptor mRNA, ... 40 6.3
46emb|BX465196.11| Mouse DNA sequence from clone RP23-459K15 on ch... 40 6.3
47gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, ... 40 6.3
48dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.3
49dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 40 6.3
50gb|AC120508.3| Oryza sativa chromosome 3 BAC OSJNBb0021O11 genom... 40 6.3
51ref|XM_574171.1| PREDICTED: Rattus norvegicus methyl-CpG binding... 40 6.3
52dbj|AP005873.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.3
53dbj|AP004187.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.3
54dbj|AK110327.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.3
55emb|Z46996.1|CEC34C12 Caenorhabditis elegans Cosmid C34C12, comp... 40 6.3
56gb|BC081932.1| Rattus norvegicus methyl-CpG binding domain prote... 40 6.3
57ref|NM_001011924.1| Rattus norvegicus methyl-CpG binding domain ... 40 6.3
58emb|BX001057.4| Zebrafish DNA sequence from clone CH211-89G13 in... 40 6.3
59emb|BX001062.7| Mouse DNA sequence from clone RP23-275J15 on chr... 40 6.3
60emb|AL691445.21| Mouse DNA sequence from clone RP23-67G3 on chro... 40 6.3
61emb|AL669976.11| Mouse DNA sequence from clone RP23-15J3 on chro... 40 6.3
62gb|AC161607.4| Mus musculus BAC clone RP23-152L11 from chromosom... 40 6.3 
>ref|NM_195751.1| Oryza sativa (japonica cultivar-group) unknown protein
           (OSJNBb0008A05.1), mRNA
          Length = 824

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 39/41 (95%)
 Strand = Plus / Plus

                                                    
Query: 413 tcgtccgacgggttcggtctcgacgacgtcatgaagggggc 453
           ||||| || ||||||||||||||||||||||||||||||||
Sbjct: 511 tcgtcggaagggttcggtctcgacgacgtcatgaagggggc 551



 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 153/194 (78%)
 Strand = Plus / Plus

                                                                       
Query: 92  tccggggacctgatgtccagcagcaagctggtcgcggaggccgccaggacagcctacgag 151
           ||||| ||||||||| | ||| ||||| |||||||||||||  ||| | | |  | | ||
Sbjct: 178 tccggcgacctgatggcgagcggcaaggtggtcgcggaggcgaccatgtcggtgttccag 237

                                                                       
Query: 152 aagaagagcgtcgagggcatcgacaaggaaaaggtagccgccgcctccgccgatatcctg 211
            |||||||||| |||||| |||||||| |  |||| |||| |||| |||| ||  | |||
Sbjct: 238 cagaagagcgtggagggcgtcgacaagaaggaggtcgccggcgccgccgcggacctgctg 297

                                                                       
Query: 212 gactccgccgccaagtacggcaagctagaggacaagccggtgggccagtacctcgagaag 271
            |||| ||  |||  ||||||||||| || ||||||||||| || |||||| |||| |||
Sbjct: 298 cactcggcgtccacctacggcaagctcgacgacaagccggtcgggcagtacatcgacaag 357

                         
Query: 272 gccgaggagtacct 285
           || |||| ||||||
Sbjct: 358 gcggaggggtacct 371
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>gb|AC131374.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone
             OSJNAb0008A05, complete sequence
          Length = 124366

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 39/41 (95%)
 Strand = Plus / Plus

                                                      
Query: 413   tcgtccgacgggttcggtctcgacgacgtcatgaagggggc 453
             ||||| || ||||||||||||||||||||||||||||||||
Sbjct: 44187 tcgtcggaagggttcggtctcgacgacgtcatgaagggggc 44227



 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 153/194 (78%)
 Strand = Plus / Plus

                                                                         
Query: 92    tccggggacctgatgtccagcagcaagctggtcgcggaggccgccaggacagcctacgag 151
             ||||| ||||||||| | ||| ||||| |||||||||||||  ||| | | |  | | ||
Sbjct: 43854 tccggcgacctgatggcgagcggcaaggtggtcgcggaggcgaccatgtcggtgttccag 43913

                                                                         
Query: 152   aagaagagcgtcgagggcatcgacaaggaaaaggtagccgccgcctccgccgatatcctg 211
              |||||||||| |||||| |||||||| |  |||| |||| |||| |||| ||  | |||
Sbjct: 43914 cagaagagcgtggagggcgtcgacaagaaggaggtcgccggcgccgccgcggacctgctg 43973

                                                                         
Query: 212   gactccgccgccaagtacggcaagctagaggacaagccggtgggccagtacctcgagaag 271
              |||| ||  |||  ||||||||||| || ||||||||||| || |||||| |||| |||
Sbjct: 43974 cactcggcgtccacctacggcaagctcgacgacaagccggtcgggcagtacatcgacaag 44033

                           
Query: 272   gccgaggagtacct 285
             || |||| ||||||
Sbjct: 44034 gcggaggggtacct 44047
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>gb|AC091749.8| Oryza sativa chromosome 10 BAC OSJNBb0008A05 genomic sequence, complete
             sequence
          Length = 150465

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 39/41 (95%)
 Strand = Plus / Plus

                                                      
Query: 413   tcgtccgacgggttcggtctcgacgacgtcatgaagggggc 453
             ||||| || ||||||||||||||||||||||||||||||||
Sbjct: 94652 tcgtcggaagggttcggtctcgacgacgtcatgaagggggc 94692



 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 153/194 (78%)
 Strand = Plus / Plus

                                                                         
Query: 92    tccggggacctgatgtccagcagcaagctggtcgcggaggccgccaggacagcctacgag 151
             ||||| ||||||||| | ||| ||||| |||||||||||||  ||| | | |  | | ||
Sbjct: 94319 tccggcgacctgatggcgagcggcaaggtggtcgcggaggcgaccatgtcggtgttccag 94378

                                                                         
Query: 152   aagaagagcgtcgagggcatcgacaaggaaaaggtagccgccgcctccgccgatatcctg 211
              |||||||||| |||||| |||||||| |  |||| |||| |||| |||| ||  | |||
Sbjct: 94379 cagaagagcgtggagggcgtcgacaagaaggaggtcgccggcgccgccgcggacctgctg 94438

                                                                         
Query: 212   gactccgccgccaagtacggcaagctagaggacaagccggtgggccagtacctcgagaag 271
              |||| ||  |||  ||||||||||| || ||||||||||| || |||||| |||| |||
Sbjct: 94439 cactcggcgtccacctacggcaagctcgacgacaagccggtcgggcagtacatcgacaag 94498

                           
Query: 272   gccgaggagtacct 285
             || |||| ||||||
Sbjct: 94499 gcggaggggtacct 94512
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
               sequence
          Length = 22685906

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 39/41 (95%)
 Strand = Plus / Plus

                                                        
Query: 413     tcgtccgacgggttcggtctcgacgacgtcatgaagggggc 453
               ||||| || ||||||||||||||||||||||||||||||||
Sbjct: 8839580 tcgtcggaagggttcggtctcgacgacgtcatgaagggggc 8839620



 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 153/194 (78%)
 Strand = Plus / Plus

                                                                           
Query: 92      tccggggacctgatgtccagcagcaagctggtcgcggaggccgccaggacagcctacgag 151
               ||||| ||||||||| | ||| ||||| |||||||||||||  ||| | | |  | | ||
Sbjct: 8839247 tccggcgacctgatggcgagcggcaaggtggtcgcggaggcgaccatgtcggtgttccag 8839306

                                                                           
Query: 152     aagaagagcgtcgagggcatcgacaaggaaaaggtagccgccgcctccgccgatatcctg 211
                |||||||||| |||||| |||||||| |  |||| |||| |||| |||| ||  | |||
Sbjct: 8839307 cagaagagcgtggagggcgtcgacaagaaggaggtcgccggcgccgccgcggacctgctg 8839366

                                                                           
Query: 212     gactccgccgccaagtacggcaagctagaggacaagccggtgggccagtacctcgagaag 271
                |||| ||  |||  ||||||||||| || ||||||||||| || |||||| |||| |||
Sbjct: 8839367 cactcggcgtccacctacggcaagctcgacgacaagccggtcgggcagtacatcgacaag 8839426

                             
Query: 272     gccgaggagtacct 285
               || |||| ||||||
Sbjct: 8839427 gcggaggggtacct 8839440
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>dbj|AK104034.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-020-G07, full
           insert sequence
          Length = 751

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 39/41 (95%)
 Strand = Plus / Plus

                                                    
Query: 413 tcgtccgacgggttcggtctcgacgacgtcatgaagggggc 453
           ||||| || ||||||||||||||||||||||||||||||||
Sbjct: 440 tcgtcggaagggttcggtctcgacgacgtcatgaagggggc 480



 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 153/194 (78%)
 Strand = Plus / Plus

                                                                       
Query: 92  tccggggacctgatgtccagcagcaagctggtcgcggaggccgccaggacagcctacgag 151
           ||||| ||||||||| | ||| ||||| |||||||||||||  ||| | | |  | | ||
Sbjct: 107 tccggcgacctgatggcgagcggcaaggtggtcgcggaggcgaccatgtcggtgttccag 166

                                                                       
Query: 152 aagaagagcgtcgagggcatcgacaaggaaaaggtagccgccgcctccgccgatatcctg 211
            |||||||||| |||||| |||||||| |  |||| |||| |||| |||| ||  | |||
Sbjct: 167 cagaagagcgtggagggcgtcgacaagaaggaggtcgccggcgccgccgcggacctgctg 226

                                                                       
Query: 212 gactccgccgccaagtacggcaagctagaggacaagccggtgggccagtacctcgagaag 271
            |||| ||  |||  ||||||||||| || ||||||||||| || |||||| |||| |||
Sbjct: 227 cactcggcgtccacctacggcaagctcgacgacaagccggtcgggcagtacatcgacaag 286

                         
Query: 272 gccgaggagtacct 285
           || |||| ||||||
Sbjct: 287 gcggaggggtacct 300
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>dbj|AK071458.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023092O07, full
           insert sequence
          Length = 750

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 39/41 (95%)
 Strand = Plus / Plus

                                                    
Query: 413 tcgtccgacgggttcggtctcgacgacgtcatgaagggggc 453
           ||||| || ||||||||||||||||||||||||||||||||
Sbjct: 439 tcgtcggaagggttcggtctcgacgacgtcatgaagggggc 479



 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 153/194 (78%)
 Strand = Plus / Plus

                                                                       
Query: 92  tccggggacctgatgtccagcagcaagctggtcgcggaggccgccaggacagcctacgag 151
           ||||| ||||||||| | ||| ||||| |||||||||||||  ||| | | |  | | ||
Sbjct: 106 tccggcgacctgatggcgagcggcaaggtggtcgcggaggcgaccatgtcggtgttccag 165

                                                                       
Query: 152 aagaagagcgtcgagggcatcgacaaggaaaaggtagccgccgcctccgccgatatcctg 211
            |||||||||| |||||| |||||||| |  |||| |||| |||| |||| ||  | |||
Sbjct: 166 cagaagagcgtggagggcgtcgacaagaaggaggtcgccggcgccgccgcggacctgctg 225

                                                                       
Query: 212 gactccgccgccaagtacggcaagctagaggacaagccggtgggccagtacctcgagaag 271
            |||| ||  |||  ||||||||||| || ||||||||||| || |||||| |||| |||
Sbjct: 226 cactcggcgtccacctacggcaagctcgacgacaagccggtcgggcagtacatcgacaag 285

                         
Query: 272 gccgaggagtacct 285
           || |||| ||||||
Sbjct: 286 gcggaggggtacct 299
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>dbj|AK070152.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023043A18, full
           insert sequence
          Length = 750

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 39/41 (95%)
 Strand = Plus / Plus

                                                    
Query: 413 tcgtccgacgggttcggtctcgacgacgtcatgaagggggc 453
           ||||| || ||||||||||||||||||||||||||||||||
Sbjct: 439 tcgtcggaagggttcggtctcgacgacgtcatgaagggggc 479



 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 153/194 (78%)
 Strand = Plus / Plus

                                                                       
Query: 92  tccggggacctgatgtccagcagcaagctggtcgcggaggccgccaggacagcctacgag 151
           ||||| ||||||||| | ||| ||||| |||||||||||||  ||| | | |  | | ||
Sbjct: 106 tccggcgacctgatggcgagcggcaaggtggtcgcggaggcgaccatgtcggtgttccag 165

                                                                       
Query: 152 aagaagagcgtcgagggcatcgacaaggaaaaggtagccgccgcctccgccgatatcctg 211
            |||||||||| |||||| |||||||| |  |||| |||| |||| |||| ||  | |||
Sbjct: 166 cagaagagcgtggagggcgtcgacaagaaggaggtcgccggcgccgccgcggacctgctg 225

                                                                       
Query: 212 gactccgccgccaagtacggcaagctagaggacaagccggtgggccagtacctcgagaag 271
            |||| ||  |||  ||||||||||| || ||||||||||| || |||||| |||| |||
Sbjct: 226 cactcggcgtccacctacggcaagctcgacgacaagccggtcgggcagtacatcgacaag 285

                         
Query: 272 gccgaggagtacct 285
           || |||| ||||||
Sbjct: 286 gcggaggggtacct 299
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 39/41 (95%)
 Strand = Plus / Plus

                                                        
Query: 413     tcgtccgacgggttcggtctcgacgacgtcatgaagggggc 453
               ||||| || ||||||||||||||||||||||||||||||||
Sbjct: 8844719 tcgtcggaagggttcggtctcgacgacgtcatgaagggggc 8844759



 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 153/194 (78%)
 Strand = Plus / Plus

                                                                           
Query: 92      tccggggacctgatgtccagcagcaagctggtcgcggaggccgccaggacagcctacgag 151
               ||||| ||||||||| | ||| ||||| |||||||||||||  ||| | | |  | | ||
Sbjct: 8844386 tccggcgacctgatggcgagcggcaaggtggtcgcggaggcgaccatgtcggtgttccag 8844445

                                                                           
Query: 152     aagaagagcgtcgagggcatcgacaaggaaaaggtagccgccgcctccgccgatatcctg 211
                |||||||||| |||||| |||||||| |  |||| |||| |||| |||| ||  | |||
Sbjct: 8844446 cagaagagcgtggagggcgtcgacaagaaggaggtcgccggcgccgccgcggacctgctg 8844505

                                                                           
Query: 212     gactccgccgccaagtacggcaagctagaggacaagccggtgggccagtacctcgagaag 271
                |||| ||  |||  ||||||||||| || ||||||||||| || |||||| |||| |||
Sbjct: 8844506 cactcggcgtccacctacggcaagctcgacgacaagccggtcgggcagtacatcgacaag 8844565

                             
Query: 272     gccgaggagtacct 285
               || |||| ||||||
Sbjct: 8844566 gcggaggggtacct 8844579
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>gb|AY596576.1| Saccharum officinarum clone SCCCLR1065E11, complete sequence
          Length = 850

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 55/63 (87%)
 Strand = Plus / Plus

                                                                       
Query: 226 gtacggcaagctagaggacaagccggtgggccagtacctcgagaaggccgaggagtacct 285
           |||||||||| | |||||||||||||  || |||||| |||||||||||||||  |||||
Sbjct: 303 gtacggcaagttcgaggacaagccggccgggcagtacatcgagaaggccgagggctacct 362

              
Query: 286 gaa 288
           |||
Sbjct: 363 gaa 365



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                         
Query: 107 tccagcagcaagctggtcgcggaggccgcc 136
           |||||| |||||||||||||||||||||||
Sbjct: 184 tccagcggcaagctggtcgcggaggccgcc 213
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 60/70 (85%)
 Strand = Plus / Minus

                                                                           
Query: 216     ccgccgccaagtacggcaagctagaggacaagccggtgggccagtacctcgagaaggccg 275
               ||||| || ||||||||||||| || | |||||| |  ||| | ||||||||||||||||
Sbjct: 5744275 ccgcctcccagtacggcaagctcgacggcaagcccgctggcaactacctcgagaaggccg 5744216

                         
Query: 276     aggagtacct 285
               ||||||||||
Sbjct: 5744215 aggagtacct 5744206



 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 367      gccagcgcctgcgcctgcac 386
                ||||||||||||||||||||
Sbjct: 27545572 gccagcgcctgcgcctgcac 27545553
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>gb|AC104179.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBa0021B21, from chromosome 3, complete sequence
          Length = 166777

 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 60/70 (85%)
 Strand = Plus / Plus

                                                                         
Query: 216   ccgccgccaagtacggcaagctagaggacaagccggtgggccagtacctcgagaaggccg 275
             ||||| || ||||||||||||| || | |||||| |  ||| | ||||||||||||||||
Sbjct: 86896 ccgcctcccagtacggcaagctcgacggcaagcccgctggcaactacctcgagaaggccg 86955

                       
Query: 276   aggagtacct 285
             ||||||||||
Sbjct: 86956 aggagtacct 86965
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 60/70 (85%)
 Strand = Plus / Minus

                                                                           
Query: 216     ccgccgccaagtacggcaagctagaggacaagccggtgggccagtacctcgagaaggccg 275
               ||||| || ||||||||||||| || | |||||| |  ||| | ||||||||||||||||
Sbjct: 5743488 ccgcctcccagtacggcaagctcgacggcaagcccgctggcaactacctcgagaaggccg 5743429

                         
Query: 276     aggagtacct 285
               ||||||||||
Sbjct: 5743428 aggagtacct 5743419



 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 367      gccagcgcctgcgcctgcac 386
                ||||||||||||||||||||
Sbjct: 27636895 gccagcgcctgcgcctgcac 27636876
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>gb|AE017353.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 13, complete
              sequence
          Length = 787999

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                       
Query: 372    cgcctgcgcctgcacctgcacccgc 396
              |||||||||||||||||||||||||
Sbjct: 209433 cgcctgcgcctgcacctgcacccgc 209457
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>ref|XM_568337.1| Cryptococcus neoformans var. neoformans JEC21 hypothetical protein
            (CNM00690) partial mRNA
          Length = 3231

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                     
Query: 372  cgcctgcgcctgcacctgcacccgc 396
            |||||||||||||||||||||||||
Sbjct: 3007 cgcctgcgcctgcacctgcacccgc 2983
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>ref|XM_568339.1| Cryptococcus neoformans var. neoformans JEC21 cytoplasm protein
            (CNM00680) partial mRNA
          Length = 1515

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                     
Query: 372  cgcctgcgcctgcacctgcacccgc 396
            |||||||||||||||||||||||||
Sbjct: 1304 cgcctgcgcctgcacctgcacccgc 1328
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>gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete genome
          Length = 4941439

 Score = 48.1 bits (24), Expect = 0.026
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                       
Query: 370     agcgcctgcgcctgcacctgcacc 393
               ||||||||||||||||||||||||
Sbjct: 1219463 agcgcctgcgcctgcacctgcacc 1219486
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>ref|XM_710271.1| Candida albicans SC5314 hypothetical protein (CaO19.5823), mRNA
          Length = 1035

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 374 cctgcgcctgcacctgcacccgc 396
           |||||||||||||||||||||||
Sbjct: 758 cctgcgcctgcacctgcacccgc 736
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>ref|XM_710206.1| Candida albicans SC5314 hypothetical protein (CaO19.13245), mRNA
          Length = 1035

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 374 cctgcgcctgcacctgcacccgc 396
           |||||||||||||||||||||||
Sbjct: 758 cctgcgcctgcacctgcacccgc 736
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>gb|AC090436.37| Chlamydomonas reinhardtii clone cr-3h1, complete sequence
          Length = 102653

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 367  gccagcgcctgcgcctgcacctg 389
            |||||||||||||||||||||||
Sbjct: 6089 gccagcgcctgcgcctgcacctg 6067
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>gb|AC090434.43| Chlamydomonas reinhardtii clone cr-1j6, complete sequence
          Length = 127686

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 367   gccagcgcctgcgcctgcacctg 389
             |||||||||||||||||||||||
Sbjct: 90716 gccagcgcctgcgcctgcacctg 90694
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>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence
          Length = 3716413

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                      
Query: 214     ctccgccgccaagtacggcaagc 236
               |||||||||||||||||||||||
Sbjct: 1404876 ctccgccgccaagtacggcaagc 1404854
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>gb|AY298951.1| Chlamydomonas reinhardtii long flagella (LF1) gene, complete cds
          Length = 7227

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 368  ccagcgcctgcgcctgcacctgcacc 393
            |||||||||| |||||||||||||||
Sbjct: 2863 ccagcgcctgtgcctgcacctgcacc 2838
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>gb|CP000058.1| Pseudomonas syringae pv. phaseolicola 1448A, complete genome
          Length = 5928787

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 366    agccagcgcctgcgcctgcacctgc 390
              |||||||||| ||||||||||||||
Sbjct: 454869 agccagcgccagcgcctgcacctgc 454893
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>emb|CT025793.2| Acinetobacter baumannii str. AYE. Genomics of Multi-Drug Resistance
           in Acinetobacter baumannii
          Length = 1134

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 365 gagccagcgcctgcgcctgcacctgcacc 393
           |||||| ||||||| ||||||||||||||
Sbjct: 55  gagccaacgcctgcacctgcacctgcacc 83
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>gb|AF156744.1| Frankia sp. FE39 glutamine synthetase (glnA) gene, partial cds
          Length = 472

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 267 agaaggccgaggagtacctg 286
           ||||||||||||||||||||
Sbjct: 44  agaaggccgaggagtacctg 63
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>gb|AF156746.1| Frankia sp. FE46 glutamine synthetase (glnA) gene, partial cds
          Length = 473

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 267 agaaggccgaggagtacctg 286
           ||||||||||||||||||||
Sbjct: 44  agaaggccgaggagtacctg 63
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>gb|AF156745.1| Frankia sp. FE245 glutamine synthetase (glnA) gene, partial cds
          Length = 477

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 267 agaaggccgaggagtacctg 286
           ||||||||||||||||||||
Sbjct: 44  agaaggccgaggagtacctg 63
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>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence
          Length = 3694126

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 184     ggtagccgccgcctccgccg 203
               ||||||||||||||||||||
Sbjct: 2035547 ggtagccgccgcctccgccg 2035566
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>ref|XM_469361.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 774

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 367 gccagcgcctgcgcctgcac 386
           ||||||||||||||||||||
Sbjct: 554 gccagcgcctgcgcctgcac 535
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>ref|XM_583697.2| PREDICTED: Bos taurus similar to grancalcin (LOC507139), mRNA
          Length = 1306

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 374 cctgcgcctgcacctgcacc 393
           ||||||||||||||||||||
Sbjct: 471 cctgcgcctgcacctgcacc 490
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>ref|XM_001004847.1| PREDICTED: Mus musculus hypothetical protein LOC673170 (LOC673170),
           mRNA
          Length = 366

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 367 gccagcgcctgcgcctgcacctgc 390
           |||||||||||||||||| |||||
Sbjct: 53  gccagcgcctgcgcctgcgcctgc 76
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>gb|AY295124.1| Anotrichium yagii photosystem I P700 apoprotein A1 (psaA) gene,
           partial cds; plastid gene for plastid product
          Length = 1951

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 55  cagcacctaagcttgaatgg 74
           ||||||||||||||||||||
Sbjct: 372 cagcacctaagcttgaatgg 391
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>gb|AY295123.1| Anotrichium yagii photosystem I P700 apoprotein A1 (psaA) gene,
           partial cds; plastid gene for plastid product
          Length = 1951

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 55  cagcacctaagcttgaatgg 74
           ||||||||||||||||||||
Sbjct: 372 cagcacctaagcttgaatgg 391
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>gb|AY295122.1| Anotrichium tenue photosystem I P700 apoprotein A1 (psaA) gene,
           partial cds; plastid gene for plastid product
          Length = 1951

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 55  cagcacctaagcttgaatgg 74
           ||||||||||||||||||||
Sbjct: 372 cagcacctaagcttgaatgg 391
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>gb|AY295121.1| Anotrichium tenue photosystem I P700 apoprotein A1 (psaA) gene,
           partial cds; plastid gene for plastid product
          Length = 1951

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 55  cagcacctaagcttgaatgg 74
           ||||||||||||||||||||
Sbjct: 372 cagcacctaagcttgaatgg 391
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>gb|AY295120.1| Anotrichium elongatum photosystem I P700 apoprotein A1 (psaA) gene,
           partial cds; plastid gene for plastid product
          Length = 1951

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 55  cagcacctaagcttgaatgg 74
           ||||||||||||||||||||
Sbjct: 372 cagcacctaagcttgaatgg 391
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>gb|AY295119.1| Anotrichium crinitum photosystem I P700 apoprotein A1 (psaA) gene,
           partial cds; plastid gene for plastid product
          Length = 1951

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 55  cagcacctaagcttgaatgg 74
           ||||||||||||||||||||
Sbjct: 372 cagcacctaagcttgaatgg 391
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>gb|AC120922.4| Rattus norvegicus 9 BAC CH230-104J1 (Children's Hospital Oakland
             Research Institute) complete sequence
          Length = 256354

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 371   gcgcctgcgcctgcacctgc 390
             ||||||||||||||||||||
Sbjct: 91589 gcgcctgcgcctgcacctgc 91570
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>gb|AC137998.2| Oryza sativa chromosome 3 BAC OSJNBa0010B01 genomic sequence, complete
             sequence
          Length = 27470

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 367   gccagcgcctgcgcctgcac 386
             ||||||||||||||||||||
Sbjct: 17202 gccagcgcctgcgcctgcac 17221
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>gb|AC095563.7| Rattus norvegicus 9 BAC CH230-7G11 (Children's Hospital Oakland
             Research Institute) complete sequence
          Length = 237247

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 371   gcgcctgcgcctgcacctgc 390
             ||||||||||||||||||||
Sbjct: 22177 gcgcctgcgcctgcacctgc 22196
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>emb|BX640449.1| Bordetella bronchiseptica strain RB50, complete genome; segment 13/16
          Length = 348074

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 367    gccagcgcctgcgcctgcac 386
              ||||||||||||||||||||
Sbjct: 179240 gccagcgcctgcgcctgcac 179259
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>emb|BX640434.1| Bordetella parapertussis strain 12822, complete genome; segment 12/14
          Length = 344805

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 367    gccagcgcctgcgcctgcac 386
              ||||||||||||||||||||
Sbjct: 131911 gccagcgcctgcgcctgcac 131930
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>emb|BX640421.1| Bordetella pertussis strain Tohama I, complete genome; segment 11/12
          Length = 349726

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 367   gccagcgcctgcgcctgcac 386
             ||||||||||||||||||||
Sbjct: 77955 gccagcgcctgcgcctgcac 77936
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>gb|AE012137.1| Xanthomonas campestris pv. campestris str. ATCC 33913,  section 45 of
            460 of the complete genome
          Length = 10029

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 367  gccagcgcctgcgcctgcac 386
            ||||||||||||||||||||
Sbjct: 8542 gccagcgcctgcgcctgcac 8561
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>gb|M97656.1|RATSR Rattus norvegicus somatostatin receptor mRNA, complete cds
          Length = 1461

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 447  agggggctgcatcgctgtca 466
            ||||||||||||||||||||
Sbjct: 1414 agggggctgcatcgctgtca 1395
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>emb|BX465196.11| Mouse DNA sequence from clone RP23-459K15 on chromosome X, complete
             sequence
          Length = 184607

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 367   gccagcgcctgcgcctgcacctgc 390
             |||||||||||||||||| |||||
Sbjct: 87210 gccagcgcctgcgcctgcgcctgc 87187
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>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome
          Length = 5148708

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 367    gccagcgcctgcgcctgcac 386
              ||||||||||||||||||||
Sbjct: 492649 gccagcgcctgcgcctgcac 492668
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2,
             complete sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 371   gcgcctgcgcctgcacctgc 390
             ||||||||||||||||||||
Sbjct: 96527 gcgcctgcgcctgcacctgc 96508
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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 118     gctggtcgcggaggccgccaggac 141
               ||||| ||||||||||||||||||
Sbjct: 6172224 gctggccgcggaggccgccaggac 6172247
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>gb|AC120508.3| Oryza sativa chromosome 3 BAC OSJNBb0021O11 genomic sequence,
            complete sequence
          Length = 123406

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 367  gccagcgcctgcgcctgcac 386
            ||||||||||||||||||||
Sbjct: 4942 gccagcgcctgcgcctgcac 4961
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>ref|XM_574171.1| PREDICTED: Rattus norvegicus methyl-CpG binding domain protein 1
           (predicted) (Mbd1_predicted), mRNA
          Length = 2777

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 374 cctgcgcctgcacctgcacc 393
           ||||||||||||||||||||
Sbjct: 690 cctgcgcctgcacctgcacc 709
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>dbj|AP005873.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:B1370C05
          Length = 148271

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 371   gcgcctgcgcctgcacctgc 390
             ||||||||||||||||||||
Sbjct: 91136 gcgcctgcgcctgcacctgc 91117
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>dbj|AP004187.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1435_F07
          Length = 139041

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 371   gcgcctgcgcctgcacctgc 390
             ||||||||||||||||||||
Sbjct: 45554 gcgcctgcgcctgcacctgc 45535
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>dbj|AK110327.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-164-D08, full
            insert sequence
          Length = 2577

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 371  gcgcctgcgcctgcacctgcacccgccg 398
            ||||||||||| ||||| ||||||||||
Sbjct: 1688 gcgcctgcgcccgcacccgcacccgccg 1661
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>emb|Z46996.1|CEC34C12 Caenorhabditis elegans Cosmid C34C12, complete sequence
          Length = 34759

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 365   gagccagcgcctgcgcctgc 384
             ||||||||||||||||||||
Sbjct: 20239 gagccagcgcctgcgcctgc 20220
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>gb|BC081932.1| Rattus norvegicus methyl-CpG binding domain protein 1, mRNA (cDNA
           clone MGC:93958 IMAGE:7114194), complete cds
          Length = 2491

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 374 cctgcgcctgcacctgcacc 393
           ||||||||||||||||||||
Sbjct: 572 cctgcgcctgcacctgcacc 591
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>ref|NM_001011924.1| Rattus norvegicus methyl-CpG binding domain protein 1 (Mbd1), mRNA
          Length = 2491

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 374 cctgcgcctgcacctgcacc 393
           ||||||||||||||||||||
Sbjct: 572 cctgcgcctgcacctgcacc 591
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>emb|BX001057.4| Zebrafish DNA sequence from clone CH211-89G13 in linkage group 1,
             complete sequence
          Length = 179685

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 35    cgacaaaagattgttgctaccagc 58
             |||||||||||| |||||||||||
Sbjct: 95340 cgacaaaagattcttgctaccagc 95363
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>emb|BX001062.7| Mouse DNA sequence from clone RP23-275J15 on chromosome X, complete
             sequence
          Length = 154573

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 367   gccagcgcctgcgcctgcacctgc 390
             |||||||||||||||||| |||||
Sbjct: 61465 gccagcgcctgcgcctgcgcctgc 61442
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>emb|AL691445.21| Mouse DNA sequence from clone RP23-67G3 on chromosome X, complete
             sequence
          Length = 189233

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 367   gccagcgcctgcgcctgcacctgc 390
             |||||||||||||||||| |||||
Sbjct: 44434 gccagcgcctgcgcctgcgcctgc 44457
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>emb|AL669976.11| Mouse DNA sequence from clone RP23-15J3 on chromosome X, complete
              sequence
          Length = 227762

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 367    gccagcgcctgcgcctgcacctgc 390
              |||||||||||||||||| |||||
Sbjct: 220278 gccagcgcctgcgcctgcgcctgc 220255
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>gb|AC161607.4| Mus musculus BAC clone RP23-152L11 from chromosome 16, complete sequence
          Length = 212274

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 39     aaaagattgttgctaccagc 58
              ||||||||||||||||||||
Sbjct: 131050 aaaagattgttgctaccagc 131031


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,528,088
Number of Sequences: 3902068
Number of extensions: 3528088
Number of successful extensions: 78610
Number of sequences better than 10.0: 62
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 77432
Number of HSP's gapped (non-prelim): 1164
length of query: 468
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 446
effective length of database: 17,147,199,772
effective search space: 7647651098312
effective search space used: 7647651098312
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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