ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baet102e11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC135417.3| Oryza sativa (japonica cultivar-group) chromosome... 42 1.7
2gb|AC135424.3| Oryza sativa (japonica cultivar-group) chromosome... 42 1.7
3dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.7
4gb|AY396707.1| Carludovica palmata phytochrome C (PHYC) gene, pa... 40 6.8
5gb|CP000096.1| Pelodictyon luteolum DSM 273, complete genome 40 6.8
6ref|XM_359635.1| Magnaporthe grisea 70-15 hypothetical protein (... 40 6.8
7gb|AY425113.1| Hypericum empetrifolium PHYC (PHYC) gene, partial... 40 6.8
8emb|AL939107.1|SCO939107 Streptomyces coelicolor A3(2) complete ... 40 6.8
9gb|DQ098104.1| Rhodococcus aetherivorans strain I24 putative ben... 40 6.8
10gb|AF276721.1|AF276721 Dioscorea elephantipes phytochrome C (PHY... 40 6.8
11dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 40 6.8
12gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete... 40 6.8

>gb|AC135417.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1314_A05,
             complete sequence
          Length = 109853

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 142   ggccgtcatgctcagcacgtg 162
             |||||||||||||||||||||
Sbjct: 96294 ggccgtcatgctcagcacgtg 96274



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>gb|AC135424.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0015F11,
             complete sequence
          Length = 177574

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 142   ggccgtcatgctcagcacgtg 162
             |||||||||||||||||||||
Sbjct: 68380 ggccgtcatgctcagcacgtg 68360



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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 142      ggccgtcatgctcagcacgtg 162
                |||||||||||||||||||||
Sbjct: 15982629 ggccgtcatgctcagcacgtg 15982609



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>gb|AY396707.1| Carludovica palmata phytochrome C (PHYC) gene, partial cds
          Length = 1182

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 133 gctcctcatggccgtcatgctcag 156
           |||||||||||| |||||||||||
Sbjct: 415 gctcctcatggctgtcatgctcag 438



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>gb|CP000096.1| Pelodictyon luteolum DSM 273, complete genome
          Length = 2364842

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 460     gctgccggcagtacccggcg 479
               ||||||||||||||||||||
Sbjct: 1929449 gctgccggcagtacccggcg 1929468



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>ref|XM_359635.1| Magnaporthe grisea 70-15 hypothetical protein (MG05142.4) partial
            mRNA
          Length = 3891

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 87   cgcgcgcgcccatggcttcc 106
            ||||||||||||||||||||
Sbjct: 1509 cgcgcgcgcccatggcttcc 1528



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>gb|AY425113.1| Hypericum empetrifolium PHYC (PHYC) gene, partial cds
          Length = 1177

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 133 gctcctcatggccgtcatgctcag 156
           |||||||||||| |||||||||||
Sbjct: 415 gctcctcatggctgtcatgctcag 438



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>emb|AL939107.1|SCO939107 Streptomyces coelicolor A3(2) complete genome; segment 4/29
          Length = 298450

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 170    gcgcgcctcctcgccgacgt 189
              ||||||||||||||||||||
Sbjct: 246316 gcgcgcctcctcgccgacgt 246335



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>gb|DQ098104.1| Rhodococcus aetherivorans strain I24 putative benzaldehyde
            dehydrogenase gene, complete cds
          Length = 1461

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 177  tcctcgccgacgtccccgcc 196
            ||||||||||||||||||||
Sbjct: 1097 tcctcgccgacgtccccgcc 1116



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>gb|AF276721.1|AF276721 Dioscorea elephantipes phytochrome C (PHYC) gene, partial cds
          Length = 1388

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 133 gctcctcatggccgtcatgctcag 156
           |||||||||||| |||||||||||
Sbjct: 469 gctcctcatggctgtcatgctcag 492



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>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 476     ggcgccgctgtgccgaccgtgcca 499
               |||||||||||||| |||||||||
Sbjct: 2592183 ggcgccgctgtgccaaccgtgcca 2592206



 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 446     gtgccgacggtgccgctgcc 465
               ||||||||||||||||||||
Sbjct: 1522643 gtgccgacggtgccgctgcc 1522624



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>gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete sequence
          Length = 2648638

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                                 
Query: 181   cgccgacgtccccgccttgcccataccgacgctgcc 216
             |||||||| | ||||||||||||| ||| |||||||
Sbjct: 78776 cgccgacgccaccgccttgcccatgccgccgctgcc 78811


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,741,552
Number of Sequences: 3902068
Number of extensions: 2741552
Number of successful extensions: 83076
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 82775
Number of HSP's gapped (non-prelim): 301
length of query: 499
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 477
effective length of database: 17,147,199,772
effective search space: 8179214291244
effective search space used: 8179214291244
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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