>ICP4_HHV11 (P08392) Trans-acting transcriptional protein ICP4 (Transcriptional|
           activator IE175) (Alpha-4 protein)
          Length = 1298

 Score = 32.3 bits (72), Expect = 0.59
 Identities = 19/66 (28%), Positives = 25/66 (37%)
 Frame = +2

Query: 206 RWTPSASATRSGSSTCTSKGCASCXXXXXXXXXKWISDTSSAASGATXXXXXXXXXXXXA 385
           RW PSAS+T S S + +S   +S             +D +  A  A             A
Sbjct: 172 RWRPSASSTSSDSGSSSSSSASSSSSSSDEDEDDDGNDAADHAREARAVGRGPSSAAPAA 231

Query: 386 PSATPP 403
           P  TPP
Sbjct: 232 PGRTPP 237



 Score = 28.9 bits (63), Expect = 6.6
 Identities = 17/34 (50%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = +2

Query: 14  VALQQACIGKRSPARTS*SWAPGSLA-SPPHSGY 112
           VAL QAC      AR S S+  GS+A + PH GY
Sbjct: 401 VALDQACFRISGAARNSSSFITGSVARAVPHLGY 434

>HXB3A_BRARE (O42368) Homeobox protein Hox-B3a (Hox-B3)|
          Length = 417

 Score = 29.6 bits (65), Expect = 3.8
 Identities = 16/54 (29%), Positives = 20/54 (37%)
 Frame = -2

Query: 438 APSPCSSMXTYLGGVADGAXXXXXXXXXXQHVAPDAAELVSEIHFRRYLTRGRR 277
           +PS  S+     GG                + +    EL  E HF RYL R RR
Sbjct: 157 SPSASSANAESSGGEKSPPGSAASKRARTAYTSAQLVELEKEFHFNRYLCRPRR 210

>KIFC2_HUMAN (Q96AC6) Kinesin-like protein KIFC2|
          Length = 838

 Score = 29.3 bits (64), Expect = 5.0
 Identities = 17/35 (48%), Positives = 20/35 (57%), Gaps = 4/35 (11%)
 Frame = +2

Query: 2   CGDLVAL----QQACIGKRSPARTS*SWAPGSLAS 94
           CGDL  L     Q+C G  S AR   SWA G+L+S
Sbjct: 347 CGDLRGLVSTFTQSCQGSLSEARGQVSWALGALSS 381

>HXA4A_BRARE (Q9PWL5) Homeobox protein Hox-A4a (Zf-26) (Hoxx4)|
          Length = 244

 Score = 28.9 bits (63), Expect = 6.6
 Identities = 13/19 (68%), Positives = 13/19 (68%)
 Frame = -2

Query: 333 AAELVSEIHFRRYLTRGRR 277
           A EL  E HF RYLTR RR
Sbjct: 159 ALELEKEFHFNRYLTRRRR 177

>HXA4_MORSA (Q9PWD2) Homeobox protein Hox-A4|
          Length = 248

 Score = 28.9 bits (63), Expect = 6.6
 Identities = 13/19 (68%), Positives = 13/19 (68%)
 Frame = -2

Query: 333 AAELVSEIHFRRYLTRGRR 277
           A EL  E HF RYLTR RR
Sbjct: 161 ALELEKEFHFNRYLTRRRR 179

>LAB_DROME (P10105) Homeotic protein labial (F24) (F90-2)|
          Length = 635

 Score = 28.5 bits (62), Expect = 8.6
 Identities = 12/17 (70%), Positives = 12/17 (70%)
 Frame = -2

Query: 327 ELVSEIHFRRYLTRGRR 277
           EL  E HF RYLTR RR
Sbjct: 521 ELEKEFHFNRYLTRARR 537

>FTZ_DROHY (P48590) Segmentation protein fushi tarazu|
          Length = 456

 Score = 28.5 bits (62), Expect = 8.6
 Identities = 12/19 (63%), Positives = 13/19 (68%)
 Frame = -2

Query: 327 ELVSEIHFRRYLTRGRRHD 271
           EL  E HF RY+TR RR D
Sbjct: 297 ELEKEFHFNRYITRRRRMD 315

>RAM1_YEAST (P22007) Protein farnesyltransferase beta subunit (EC 2.5.1.58)|
           (CAAX farnesyltransferase beta subunit) (RAS proteins
           prenyltransferase beta) (FTase-beta)
          Length = 431

 Score = 28.5 bits (62), Expect = 8.6
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +1

Query: 304 EVDFRHEFCCVRRDVLLQVLAAELPEGTIRY 396
           EVD R  +C +    LL +L  EL EG + Y
Sbjct: 207 EVDTRGIYCALSIATLLNILTEELTEGVLNY 237

>HOX3_BRAFL (P50901) Homeobox protein HOX3|
          Length = 411

 Score = 28.5 bits (62), Expect = 8.6
 Identities = 16/51 (31%), Positives = 20/51 (39%)
 Frame = -2

Query: 429 PCSSMXTYLGGVADGAXXXXXXXXXXQHVAPDAAELVSEIHFRRYLTRGRR 277
           P  S+ T   G + G            + +    EL  E HF RYL R RR
Sbjct: 115 PNLSVGTTEPGESPGLGGAAGKRARTAYTSAQLVELEKEFHFNRYLCRPRR 165


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,266,601
Number of Sequences: 219361
Number of extensions: 655562
Number of successful extensions: 2328
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2267
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2326
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2909956200
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)