>SYE_PROMA (Q7VDB2) Glutamyl-tRNA synthetase (EC 6.1.1.17) (Glutamate--tRNA|
           ligase) (GluRS)
          Length = 476

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 10/57 (17%)
 Frame = -2

Query: 250 VHMQTRSIESRSSRSVCCRGATTDEE----------DGELPRHDGGHRQMARHQAEE 110
           +H    +I+S  ++ +  R   T+EE           GE PR+D  HR++ + Q ++
Sbjct: 79  IHEHKEAIKSLINKGLAYRCFATEEELQTMRDAQINSGEAPRYDNRHRKLTKEQEQK 135

>SYE_SALTY (P0A2K3) Glutamyl-tRNA synthetase (EC 6.1.1.17) (Glutamate--tRNA|
           ligase) (GluRS)
          Length = 471

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = -2

Query: 169 GELPRHDGGHRQMARHQAEEEQPMHL*GDPRDGFV 65
           GE PR+DG  R    H A++E  +    +P+DG V
Sbjct: 116 GEKPRYDGRCRHSHEHHADDEPCVVRFANPQDGSV 150

>SYE_SALTI (P0A2K4) Glutamyl-tRNA synthetase (EC 6.1.1.17) (Glutamate--tRNA|
           ligase) (GluRS)
          Length = 471

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = -2

Query: 169 GELPRHDGGHRQMARHQAEEEQPMHL*GDPRDGFV 65
           GE PR+DG  R    H A++E  +    +P+DG V
Sbjct: 116 GEKPRYDGRCRHSHEHHADDEPCVVRFANPQDGSV 150

>SYE_SALPA (Q5PNE5) Glutamyl-tRNA synthetase (EC 6.1.1.17) (Glutamate--tRNA|
           ligase) (GluRS)
          Length = 471

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = -2

Query: 169 GELPRHDGGHRQMARHQAEEEQPMHL*GDPRDGFV 65
           GE PR+DG  R    H A++E  +    +P+DG V
Sbjct: 116 GEKPRYDGRCRHSHEHHADDEPCVVRFANPQDGSV 150

>Y855_TREPA (O83827) Hypothetical protein TP0855 precursor|
          Length = 1127

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +3

Query: 267 ASQGRRWARLTTAYGTAPSTGTSPGARSYSAA 362
           A+     AR   AY  AP+   +PGAR+ SAA
Sbjct: 210 AASAHEAARARDAYSAAPAAPAAPGARAPSAA 241

>CRNL1_HUMAN (Q9BZJ0) Crooked neck-like protein 1 (Crooked neck homolog) (hCrn)|
          Length = 848

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 19/48 (39%), Positives = 22/48 (45%)
 Frame = -2

Query: 286 HRRPCEAGLQEGVHMQTRSIESRSSRSVCCRGATTDEEDGELPRHDGG 143
           HR PC A  Q GV    RS  SR+  S  CR     +ED +   H  G
Sbjct: 64  HRSPCVAASQHGVTHLIRS--SRTPHSTRCR-----KEDAQPGHHGNG 104

>CAC1A_HUMAN (O00555) Voltage-dependent P/Q-type calcium channel alpha-1A subunit|
            (Voltage-gated calcium channel alpha subunit Cav2.1)
            (Calcium channel, L type, alpha-1 polypeptide isoform 4)
            (Brain calcium channel I) (BI)
          Length = 2505

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 22/58 (37%), Positives = 28/58 (48%)
 Frame = -2

Query: 292  RAHRRPCEAGLQEGVHMQTRSIESRSSRSVCCRGATTDEEDGELPRHDGGHRQMARHQ 119
            RAHRRP E G ++    + R  E         R A   E +GE P  DGG R+  RH+
Sbjct: 960  RAHRRPGEEGPEDKAERRARHREG-------SRPARGGEGEGEGP--DGGERR-RRHR 1007

>ARI4A_HUMAN (P29374) AT-rich interactive domain-containing protein 4A (ARID|
           domain-containing protein 4A) (Retinoblastoma-binding
           protein 1) (RBBP-1)
          Length = 1257

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 3/78 (3%)
 Frame = -2

Query: 265 GLQEG-VHMQTRSIES--RSSRSVCCRGATTDEEDGELPRHDGGHRQMARHQAEEEQPMH 95
           GLQ+  + ++TR +    +   S     +++D+EDG    +D    + A+   EE     
Sbjct: 247 GLQKASIFLKTRVVPDNWKMDISEILESSSSDDEDGPAEENDEEKEKEAKKTEEEVPEEE 306

Query: 94  L*GDPRDGFVCRRWKKLE 41
           L  + RD F+ + +K +E
Sbjct: 307 LDPEERDNFLQQLYKFME 324

>VPS70_YEAST (P47161) Vacuolar protein sorting protein 70 (EC 3.4.-.-)|
          Length = 811

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 16/45 (35%), Positives = 20/45 (44%)
 Frame = +1

Query: 46  ASSISYIRIHPVDLLKDASAAPLLPGV*PFGGDRRHGAAVPRLPR 180
           A + SYIR   V+   D    P  PG      D  H + V R+PR
Sbjct: 320 ARNPSYIRRDSVNYFSDTPGDPTTPGYPSKDSDTEHMSPVGRVPR 364

>YPDD_CAEEL (Q11191) Hypothetical protein C05D11.13|
          Length = 270

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 19/82 (23%), Positives = 33/82 (40%)
 Frame = -2

Query: 349 DLAPGEVPVEGAVPYAVVRRAHRRPCEAGLQEGVHMQTRSIESRSSRSVCCRGATTDEED 170
           D+     P EG+    + + AHR+      +      TR  ++   +   C    T+EE 
Sbjct: 55  DIPSSSEPQEGSRECRLSKEAHRKRLRRARETSEETHTRLAKAADYKRKRC-SEETEEEY 113

Query: 169 GELPRHDGGHRQMARHQAEEEQ 104
            E  +     ++M R Q  E+Q
Sbjct: 114 RERLKRQAERKKMERMQESEDQ 135

>VIE1_MCMVS (P11210) Immediate-early protein 1 (IE1) (Immediate-early|
           phosphoprotein PP89)
          Length = 595

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 18/48 (37%), Positives = 22/48 (45%), Gaps = 6/48 (12%)
 Frame = -2

Query: 340 PGEVPVEGAVPYAVVRRAHRRPC------EAGLQEGVHMQTRSIESRS 215
           PGE   E  V    +RR H  PC      +A  Q  V  Q ++IES S
Sbjct: 216 PGEFKPELCVLVGAIRRLHDPPCYTKPFLDAKSQLAVWQQMKAIESES 263

>GIDA_THET2 (Q72H88) tRNA uridine 5-carboxymethylaminomethyl modification|
           enzyme gidA (Glucose-inhibited division protein A)
          Length = 597

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 15/44 (34%), Positives = 18/44 (40%)
 Frame = -3

Query: 186 PPTRKTGNCRAMTAVTAKWLDTRQKRSSRCIFEEIHGMDSYVGD 55
           PP   TGN     A    W     +R+ R I E +H    Y GD
Sbjct: 219 PPGSFTGNPGPHAARLPTWQTRTTERTHRLILENLHLSPLYAGD 262

>MANB_CALSA (P22533) Beta-mannanase/endoglucanase A precursor [Includes: Mannan|
           endo-1,4-beta-mannosidase A (EC 3.2.1.78)
           (Beta-mannanase) (Endo-1,4-mannanase);
           Endo-1,4-beta-glucanase (EC 3.2.1.4) (Cellulase)]
          Length = 1331

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -2

Query: 97  HL*GDPRDGFVCRRWKKLEIAVKEWTWC 14
           H  GDP +  + R  K+ +I +  W+WC
Sbjct: 262 HTDGDPDEEAIVRYAKQYKIGLFSWSWC 289

>LEGA_PEA (P02857) Legumin A precursor [Contains: Legumin A alpha chain|
           (Legumin A acidic chain); Legumin A beta chain (Legumin
           A basic chain)]
          Length = 517

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = -2

Query: 181 DEEDGELPRHDGGHRQMARHQAEEE-QPMH 95
           DE++ + PRH  G RQ      +EE QP H
Sbjct: 274 DEDEEKQPRHQRGSRQEEEEDEDEERQPRH 303

>SYE_SHIFL (Q83K84) Glutamyl-tRNA synthetase (EC 6.1.1.17) (Glutamate--tRNA|
           ligase) (GluRS)
          Length = 471

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -2

Query: 169 GELPRHDGGHRQMARHQAEEEQPMHL*GDPRDGFV 65
           GE PR+DG  R    H A++E  +    +P++G V
Sbjct: 116 GEKPRYDGRCRHSHEHHADDEPCVVRFANPQEGSV 150

>SYE_ECOLI (P04805) Glutamyl-tRNA synthetase (EC 6.1.1.17) (Glutamate--tRNA|
           ligase) (GluRS)
          Length = 471

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -2

Query: 169 GELPRHDGGHRQMARHQAEEEQPMHL*GDPRDGFV 65
           GE PR+DG  R    H A++E  +    +P++G V
Sbjct: 116 GEKPRYDGRCRHSHEHHADDEPCVVRFANPQEGSV 150

>SYE_ECOL6 (Q8FFC9) Glutamyl-tRNA synthetase (EC 6.1.1.17) (Glutamate--tRNA|
           ligase) (GluRS)
          Length = 471

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -2

Query: 169 GELPRHDGGHRQMARHQAEEEQPMHL*GDPRDGFV 65
           GE PR+DG  R    H A++E  +    +P++G V
Sbjct: 116 GEKPRYDGRCRHSHEHHADDEPCVVRFANPQEGSV 150

>SYE_ECO57 (Q8XBN2) Glutamyl-tRNA synthetase (EC 6.1.1.17) (Glutamate--tRNA|
           ligase) (GluRS)
          Length = 471

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -2

Query: 169 GELPRHDGGHRQMARHQAEEEQPMHL*GDPRDGFV 65
           GE PR+DG  R    H A++E  +    +P++G V
Sbjct: 116 GEKPRYDGRCRHSHEHHADDEPCVVRFANPQEGSV 150

>CHRD_XENLA (Q91713) Chordin precursor (Organizer-specific secreted dorsalizing|
           factor)
          Length = 941

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -2

Query: 109 EQPMHL*GDPRDGFVCRRWKKL 44
           E P+H  G PRD  +C  W+ L
Sbjct: 222 EHPVHRMGSPRDDTICGIWRSL 243

>LX15B_RAT (Q8K4F2) Arachidonate 15-lipoxygenase type II (EC 1.13.11.33)|
           (15-LOX-2)
          Length = 677

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
 Frame = -2

Query: 178 EEDGE--LPRHDGGHRQMARHQAEEEQPMHL*GDPRDGFVCRRWKKLE 41
           EED E  LP+  G    +  H+A  E P+ L   P D + C RW +LE
Sbjct: 50  EEDFEVTLPQDVGTVLMLRIHKAPPEAPLPLLSFPPDAWYC-RWFELE 96

>TRAB_RHISN (P55416) Probable conjugal transfer protein traB|
          Length = 387

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
 Frame = +3

Query: 228 MLRVCMCTPS-WSPASQGRRWARLTTAYGTAPSTGTSPGARSYSAASLWP 374
           +L V +  P  WS A   R  A ++  Y  A S G   G  ++  + LWP
Sbjct: 29  LLPVALAFPILWSRARTRRVAALVSAGYFLAASRGLPQGVAAFYTSDLWP 78

>TPIS_COPCI (Q12574) Triosephosphate isomerase (EC 5.3.1.1) (TIM)|
           (Triose-phosphate isomerase)
          Length = 251

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 14/60 (23%), Positives = 29/60 (48%)
 Frame = -2

Query: 349 DLAPGEVPVEGAVPYAVVRRAHRRPCEAGLQEGVHMQTRSIESRSSRSVCCRGATTDEED 170
           +++P ++   G +PY ++  + RR       E V ++TR+      + + C G T  E +
Sbjct: 77  EISPKQISDAG-IPYVILGHSERRTLFHETSEVVALKTRAALDNGLKVILCIGETLKERE 135

>SMO_DROME (P91682) Protein smoothened precursor (dSMO) (SMOH) (Smooth)|
          Length = 1036

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 9/38 (23%)
 Frame = +2

Query: 239  LHVHSLLESSFAGSPMGSP---------DHGVRHGPFD 325
            L V SLL SSF+G  MG P         D G++  PF+
Sbjct: 931  LDVGSLLNSSFSGISMGKPHSRNSKTSCDVGIQANPFE 968

>LEGA2_PEA (P15838) Legumin A2 precursor [Contains: Legumin A2 alpha chain|
           (Legumin A2 acidic chain); Legumin A2 beta chain
           (Legumin A2 basic chain)]
          Length = 520

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
 Frame = -2

Query: 181 DEEDGELPRHDGGHRQMARHQAEEE-QPMH 95
           DE++   PRH  G RQ      +EE QP H
Sbjct: 277 DEDEERQPRHQRGSRQEEEEDEDEERQPRH 306

>RADA_MYCTU (P65953) DNA repair protein radA homolog (DNA repair protein sms|
           homolog)
          Length = 480

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -2

Query: 328 PVEGAVPYAVVRRAHRRPCEAGLQE 254
           P  GAVP + V     RPC  G+ E
Sbjct: 52  PASGAVPISAVDAHRTRPCPTGIDE 76

>RADA_MYCBO (P65954) DNA repair protein radA homolog (DNA repair protein sms|
           homolog)
          Length = 480

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -2

Query: 328 PVEGAVPYAVVRRAHRRPCEAGLQE 254
           P  GAVP + V     RPC  G+ E
Sbjct: 52  PASGAVPISAVDAHRTRPCPTGIDE 76


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,742,309
Number of Sequences: 219361
Number of extensions: 1062790
Number of successful extensions: 3513
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 3379
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3509
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 1402043640
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)