| Clone Name | baet102d10 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC131111.4| Mus musculus BAC clone RP23-449N4 from chromosome 7, complete sequence Length = 179068 Score = 44.1 bits (22), Expect = 0.32 Identities = 22/22 (100%) Strand = Plus / Plus Query: 104 ctgctcctcttctgcctggtgt 125 |||||||||||||||||||||| Sbjct: 170442 ctgctcctcttctgcctggtgt 170463
>gb|AC147232.4| Mus musculus BAC clone RP23-311C15 from 7, complete sequence Length = 191521 Score = 44.1 bits (22), Expect = 0.32 Identities = 22/22 (100%) Strand = Plus / Plus Query: 104 ctgctcctcttctgcctggtgt 125 |||||||||||||||||||||| Sbjct: 38469 ctgctcctcttctgcctggtgt 38490
>ref|XM_315443.2| Anopheles gambiae str. PEST ENSANGP00000014284 (ENSANGG00000011795), partial mRNA Length = 294 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 169 cgtcttcctcgtcggtggtgg 189 ||||||||||||||||||||| Sbjct: 31 cgtcttcctcgtcggtggtgg 11
>gb|AC123726.11| Mus musculus chromosome 3, clone RP23-436F15, complete sequence Length = 224297 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 119 ctggtgtctagccatttggc 138 |||||||||||||||||||| Sbjct: 119001 ctggtgtctagccatttggc 119020
>ref|NM_005959.3| Homo sapiens melatonin receptor 1B (MTNR1B), mRNA Length = 1662 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 358 cggcctcgctgtggccatca 377 |||||||||||||||||||| Sbjct: 913 cggcctcgctgtggccatca 932
>ref|XM_522146.1| PREDICTED: Pan troglodytes melatonin receptor 1B (LOC466747), mRNA Length = 1518 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 358 cggcctcgctgtggccatca 377 |||||||||||||||||||| Sbjct: 1239 cggcctcgctgtggccatca 1258
>gb|BC069163.1| Homo sapiens melatonin receptor 1B, mRNA (cDNA clone MGC:95407 IMAGE:7216982), complete cds Length = 1662 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 358 cggcctcgctgtggccatca 377 |||||||||||||||||||| Sbjct: 913 cggcctcgctgtggccatca 932
>gb|AC146447.3| Pan troglodytes BAC clone RP43-4N6 from 7, complete sequence Length = 200529 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 110 ctcttctgcctggtgtctag 129 |||||||||||||||||||| Sbjct: 98754 ctcttctgcctggtgtctag 98735
>gb|AC131800.4| Mus musculus BAC clone RP24-535O17 from chromosome 17, complete sequence Length = 162701 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 31 tcacagctatctctagcttcttcc 54 ||||||||||| |||||||||||| Sbjct: 70195 tcacagctatcactagcttcttcc 70172
>gb|AY521019.1| Homo sapiens melatonin receptor 1B (MTNR1B) mRNA, complete cds Length = 1089 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 358 cggcctcgctgtggccatca 377 |||||||||||||||||||| Sbjct: 810 cggcctcgctgtggccatca 829
>gb|AC006358.6| Homo sapiens PAC clone RP5-1127D14 from 7, complete sequence Length = 143216 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 110 ctcttctgcctggtgtctag 129 |||||||||||||||||||| Sbjct: 107182 ctcttctgcctggtgtctag 107201
>emb|AL050321.11|HSJ717M23 Human DNA sequence from clone RP4-717M23 on chromosome 20 Contains the CSRP2BP gene for CSRP2 binding protein, a chromosome 7 open reading frame 24 (C7orf24) pseudogene and two CpG islands, complete sequence Length = 101589 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 250 ctccctcttggagtccagct 269 |||||||||||||||||||| Sbjct: 43375 ctccctcttggagtccagct 43356
>tpg|BK002674.1| TPA: TPA_inf: Drosophila melanogaster HDC14513 (HDC14513) gene, complete cds Length = 1889 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 206 gctcctgctgcttctgcttt 225 |||||||||||||||||||| Sbjct: 1812 gctcctgctgcttctgcttt 1831
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 297 accacggcgtacggcacggc 316 |||||||||||||||||||| Sbjct: 19741916 accacggcgtacggcacggc 19741897
>gb|AC007815.7|AC007815 Drosophila melanogaster, chromosome 3R, region 92B-92B, BAC clone BACR07I18, complete sequence Length = 159413 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 206 gctcctgctgcttctgcttt 225 |||||||||||||||||||| Sbjct: 106026 gctcctgctgcttctgcttt 106045
>gb|AC104088.6| Homo sapiens BAC clone RP11-744C22 from 2, complete sequence Length = 158746 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 239 ctgcatgtgcactccctctt 258 |||||||||||||||||||| Sbjct: 112245 ctgcatgtgcactccctctt 112226
>dbj|AB033598.2| Homo sapiens gene for melatonin 1b receptor, complete cds Length = 3413 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 358 cggcctcgctgtggccatca 377 |||||||||||||||||||| Sbjct: 2585 cggcctcgctgtggccatca 2604
>gb|AY227381.1| Cebus apella melatonin receptor isoform 2 mRNA, partial cds Length = 218 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 358 cggcctcgctgtggccatca 377 |||||||||||||||||||| Sbjct: 86 cggcctcgctgtggccatca 105
>dbj|AK121419.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023133J11, full insert sequence Length = 5284 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 297 accacggcgtacggcacggc 316 |||||||||||||||||||| Sbjct: 96 accacggcgtacggcacggc 77
>ref|XM_552371.1| Anopheles gambiae str. PEST ENSANGP00000025877 (ENSANGG00000022874), partial mRNA Length = 2922 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 205 cgctcctgctgcttctgctt 224 |||||||||||||||||||| Sbjct: 2780 cgctcctgctgcttctgctt 2761
>ref|XM_552370.1| Anopheles gambiae str. PEST ENSANGP00000025488 (ENSANGG00000022874), partial mRNA Length = 3087 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 205 cgctcctgctgcttctgctt 224 |||||||||||||||||||| Sbjct: 2939 cgctcctgctgcttctgctt 2920
>dbj|AK064077.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-100-A07, full insert sequence Length = 1526 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 297 accacggcgtacggcacggc 316 |||||||||||||||||||| Sbjct: 129 accacggcgtacggcacggc 110
>gb|AE003727.3| Drosophila melanogaster chromosome 3R, section 65 of 118 of the complete sequence Length = 242618 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 206 gctcctgctgcttctgcttt 225 |||||||||||||||||||| Sbjct: 87364 gctcctgctgcttctgcttt 87383
>dbj|AP002371.3| Homo sapiens genomic DNA, chromosome 11q clone:RP11-183A22, complete sequence Length = 159441 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 358 cggcctcgctgtggccatca 377 |||||||||||||||||||| Sbjct: 11473 cggcctcgctgtggccatca 11492
>gb|U25341.1|HSU25341 Human Mel1b-melatonin receptor (MTNR1B) mRNA, complete cds Length = 1105 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 358 cggcctcgctgtggccatca 377 |||||||||||||||||||| Sbjct: 822 cggcctcgctgtggccatca 841
>emb|CT027568.16| Mouse DNA sequence from clone CH29-70E9 on chromosome 17, complete sequence Length = 90722 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 31 tcacagctatctctagcttcttcc 54 ||||||||||| |||||||||||| Sbjct: 80946 tcacagctatcactagcttcttcc 80923
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 297 accacggcgtacggcacggc 316 |||||||||||||||||||| Sbjct: 19668130 accacggcgtacggcacggc 19668111
>emb|AL713931.5|CNS07YP8 Oryza sativa chromosome 12, . BAC OSJNBa0035B12 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 161160 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 297 accacggcgtacggcacggc 316 |||||||||||||||||||| Sbjct: 18802 accacggcgtacggcacggc 18783 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,587,112 Number of Sequences: 3902068 Number of extensions: 2587112 Number of successful extensions: 62119 Number of sequences better than 10.0: 28 Number of HSP's better than 10.0 without gapping: 28 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 62047 Number of HSP's gapped (non-prelim): 72 length of query: 377 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 355 effective length of database: 17,147,199,772 effective search space: 6087255919060 effective search space used: 6087255919060 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)