ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baet102d10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC131111.4| Mus musculus BAC clone RP23-449N4 from chromosome... 44 0.32
2gb|AC147232.4| Mus musculus BAC clone RP23-311C15 from 7, comple... 44 0.32
3ref|XM_315443.2| Anopheles gambiae str. PEST ENSANGP00000014284 ... 42 1.3
4gb|AC123726.11| Mus musculus chromosome 3, clone RP23-436F15, co... 40 5.0
5ref|NM_005959.3| Homo sapiens melatonin receptor 1B (MTNR1B), mRNA 40 5.0
6ref|XM_522146.1| PREDICTED: Pan troglodytes melatonin receptor 1... 40 5.0
7gb|BC069163.1| Homo sapiens melatonin receptor 1B, mRNA (cDNA cl... 40 5.0
8gb|AC146447.3| Pan troglodytes BAC clone RP43-4N6 from 7, comple... 40 5.0
9gb|AC131800.4| Mus musculus BAC clone RP24-535O17 from chromosom... 40 5.0
10gb|AY521019.1| Homo sapiens melatonin receptor 1B (MTNR1B) mRNA,... 40 5.0
11gb|AC006358.6| Homo sapiens PAC clone RP5-1127D14 from 7, comple... 40 5.0
12emb|AL050321.11|HSJ717M23 Human DNA sequence from clone RP4-717M... 40 5.0
13tpg|BK002674.1| TPA: TPA_inf: Drosophila melanogaster HDC14513 (... 40 5.0
14dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.0
15gb|AC007815.7|AC007815 Drosophila melanogaster, chromosome 3R, r... 40 5.0
16gb|AC104088.6| Homo sapiens BAC clone RP11-744C22 from 2, comple... 40 5.0
17dbj|AB033598.2| Homo sapiens gene for melatonin 1b receptor, com... 40 5.0
18gb|AY227381.1| Cebus apella melatonin receptor isoform 2 mRNA, p... 40 5.0
19dbj|AK121419.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.0
20ref|XM_552371.1| Anopheles gambiae str. PEST ENSANGP00000025877 ... 40 5.0
21ref|XM_552370.1| Anopheles gambiae str. PEST ENSANGP00000025488 ... 40 5.0
22dbj|AK064077.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.0
23gb|AE003727.3| Drosophila melanogaster chromosome 3R, section 65... 40 5.0
24dbj|AP002371.3| Homo sapiens genomic DNA, chromosome 11q clone:R... 40 5.0
25gb|U25341.1|HSU25341 Human Mel1b-melatonin receptor (MTNR1B) mRN... 40 5.0
26emb|CT027568.16| Mouse DNA sequence from clone CH29-70E9 on chro... 40 5.0
27gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 40 5.0
28emb|AL713931.5|CNS07YP8 Oryza sativa chromosome 12, . BAC OSJNBa... 40 5.0

>gb|AC131111.4| Mus musculus BAC clone RP23-449N4 from chromosome 7, complete sequence
          Length = 179068

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 104    ctgctcctcttctgcctggtgt 125
              ||||||||||||||||||||||
Sbjct: 170442 ctgctcctcttctgcctggtgt 170463



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>gb|AC147232.4| Mus musculus BAC clone RP23-311C15 from 7, complete sequence
          Length = 191521

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 104   ctgctcctcttctgcctggtgt 125
             ||||||||||||||||||||||
Sbjct: 38469 ctgctcctcttctgcctggtgt 38490



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>ref|XM_315443.2| Anopheles gambiae str. PEST ENSANGP00000014284
           (ENSANGG00000011795), partial mRNA
          Length = 294

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 169 cgtcttcctcgtcggtggtgg 189
           |||||||||||||||||||||
Sbjct: 31  cgtcttcctcgtcggtggtgg 11



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>gb|AC123726.11| Mus musculus chromosome 3, clone RP23-436F15, complete sequence
          Length = 224297

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 119    ctggtgtctagccatttggc 138
              ||||||||||||||||||||
Sbjct: 119001 ctggtgtctagccatttggc 119020



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>ref|NM_005959.3| Homo sapiens melatonin receptor 1B (MTNR1B), mRNA
          Length = 1662

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 358 cggcctcgctgtggccatca 377
           ||||||||||||||||||||
Sbjct: 913 cggcctcgctgtggccatca 932



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>ref|XM_522146.1| PREDICTED: Pan troglodytes melatonin receptor 1B (LOC466747), mRNA
          Length = 1518

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 358  cggcctcgctgtggccatca 377
            ||||||||||||||||||||
Sbjct: 1239 cggcctcgctgtggccatca 1258



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>gb|BC069163.1| Homo sapiens melatonin receptor 1B, mRNA (cDNA clone MGC:95407
           IMAGE:7216982), complete cds
          Length = 1662

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 358 cggcctcgctgtggccatca 377
           ||||||||||||||||||||
Sbjct: 913 cggcctcgctgtggccatca 932



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>gb|AC146447.3| Pan troglodytes BAC clone RP43-4N6 from 7, complete sequence
          Length = 200529

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 110   ctcttctgcctggtgtctag 129
             ||||||||||||||||||||
Sbjct: 98754 ctcttctgcctggtgtctag 98735



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>gb|AC131800.4| Mus musculus BAC clone RP24-535O17 from chromosome 17, complete
             sequence
          Length = 162701

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 31    tcacagctatctctagcttcttcc 54
             ||||||||||| ||||||||||||
Sbjct: 70195 tcacagctatcactagcttcttcc 70172



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>gb|AY521019.1| Homo sapiens melatonin receptor 1B (MTNR1B) mRNA, complete cds
          Length = 1089

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 358 cggcctcgctgtggccatca 377
           ||||||||||||||||||||
Sbjct: 810 cggcctcgctgtggccatca 829



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>gb|AC006358.6| Homo sapiens PAC clone RP5-1127D14 from 7, complete sequence
          Length = 143216

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 110    ctcttctgcctggtgtctag 129
              ||||||||||||||||||||
Sbjct: 107182 ctcttctgcctggtgtctag 107201



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>emb|AL050321.11|HSJ717M23 Human DNA sequence from clone RP4-717M23 on chromosome 20 Contains the
             CSRP2BP gene for CSRP2 binding protein, a chromosome 7
             open reading frame 24 (C7orf24) pseudogene and two CpG
             islands, complete sequence
          Length = 101589

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 250   ctccctcttggagtccagct 269
             ||||||||||||||||||||
Sbjct: 43375 ctccctcttggagtccagct 43356



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>tpg|BK002674.1| TPA: TPA_inf: Drosophila melanogaster HDC14513 (HDC14513) gene,
            complete cds
          Length = 1889

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 206  gctcctgctgcttctgcttt 225
            ||||||||||||||||||||
Sbjct: 1812 gctcctgctgcttctgcttt 1831



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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 297      accacggcgtacggcacggc 316
                ||||||||||||||||||||
Sbjct: 19741916 accacggcgtacggcacggc 19741897



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>gb|AC007815.7|AC007815 Drosophila melanogaster, chromosome 3R, region 92B-92B, BAC clone
              BACR07I18, complete sequence
          Length = 159413

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 206    gctcctgctgcttctgcttt 225
              ||||||||||||||||||||
Sbjct: 106026 gctcctgctgcttctgcttt 106045



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>gb|AC104088.6| Homo sapiens BAC clone RP11-744C22 from 2, complete sequence
          Length = 158746

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 239    ctgcatgtgcactccctctt 258
              ||||||||||||||||||||
Sbjct: 112245 ctgcatgtgcactccctctt 112226



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>dbj|AB033598.2| Homo sapiens gene for melatonin 1b receptor, complete cds
          Length = 3413

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 358  cggcctcgctgtggccatca 377
            ||||||||||||||||||||
Sbjct: 2585 cggcctcgctgtggccatca 2604



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>gb|AY227381.1| Cebus apella melatonin receptor isoform 2 mRNA, partial cds
          Length = 218

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 358 cggcctcgctgtggccatca 377
           ||||||||||||||||||||
Sbjct: 86  cggcctcgctgtggccatca 105



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>dbj|AK121419.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023133J11, full
           insert sequence
          Length = 5284

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 297 accacggcgtacggcacggc 316
           ||||||||||||||||||||
Sbjct: 96  accacggcgtacggcacggc 77



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>ref|XM_552371.1| Anopheles gambiae str. PEST ENSANGP00000025877 (ENSANGG00000022874),
            partial mRNA
          Length = 2922

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 205  cgctcctgctgcttctgctt 224
            ||||||||||||||||||||
Sbjct: 2780 cgctcctgctgcttctgctt 2761



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>ref|XM_552370.1| Anopheles gambiae str. PEST ENSANGP00000025488 (ENSANGG00000022874),
            partial mRNA
          Length = 3087

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 205  cgctcctgctgcttctgctt 224
            ||||||||||||||||||||
Sbjct: 2939 cgctcctgctgcttctgctt 2920



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>dbj|AK064077.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-100-A07, full
           insert sequence
          Length = 1526

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 297 accacggcgtacggcacggc 316
           ||||||||||||||||||||
Sbjct: 129 accacggcgtacggcacggc 110



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>gb|AE003727.3| Drosophila melanogaster chromosome 3R, section 65 of 118 of the
             complete sequence
          Length = 242618

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 206   gctcctgctgcttctgcttt 225
             ||||||||||||||||||||
Sbjct: 87364 gctcctgctgcttctgcttt 87383



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>dbj|AP002371.3| Homo sapiens genomic DNA, chromosome 11q clone:RP11-183A22, complete
             sequence
          Length = 159441

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 358   cggcctcgctgtggccatca 377
             ||||||||||||||||||||
Sbjct: 11473 cggcctcgctgtggccatca 11492



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>gb|U25341.1|HSU25341 Human Mel1b-melatonin receptor (MTNR1B) mRNA, complete cds
          Length = 1105

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 358 cggcctcgctgtggccatca 377
           ||||||||||||||||||||
Sbjct: 822 cggcctcgctgtggccatca 841



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>emb|CT027568.16| Mouse DNA sequence from clone CH29-70E9 on chromosome 17, complete
             sequence
          Length = 90722

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 31    tcacagctatctctagcttcttcc 54
             ||||||||||| ||||||||||||
Sbjct: 80946 tcacagctatcactagcttcttcc 80923



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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 297      accacggcgtacggcacggc 316
                ||||||||||||||||||||
Sbjct: 19668130 accacggcgtacggcacggc 19668111



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>emb|AL713931.5|CNS07YP8 Oryza sativa chromosome 12, . BAC OSJNBa0035B12 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 161160

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 297   accacggcgtacggcacggc 316
             ||||||||||||||||||||
Sbjct: 18802 accacggcgtacggcacggc 18783


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,587,112
Number of Sequences: 3902068
Number of extensions: 2587112
Number of successful extensions: 62119
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 62047
Number of HSP's gapped (non-prelim): 72
length of query: 377
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 355
effective length of database: 17,147,199,772
effective search space: 6087255919060
effective search space used: 6087255919060
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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