>COL5_ARATH (Q9FHH8) Zinc finger protein CONSTANS-LIKE 5|
          Length = 355

 Score = 66.6 bits (161), Expect = 2e-11
 Identities = 38/97 (39%), Positives = 40/97 (41%), Gaps = 1/97 (1%)
 Frame = +2

Query: 128 WGVXXXXXXXXXXSPAAVHCRTCXXXXXXXXXAYLCAGCDAG-HARAGHERVWVCEVCEL 304
           WG             AAV CR           A+LC  CD   H+   HERVWVCEVCE 
Sbjct: 15  WGAAARSCDACKSVTAAVFCRV--------DSAFLCIACDTRIHSFTRHERVWVCEVCEQ 66

Query: 305 XXXXXXXXXXXXXXXXXXXXXIHHANPLARRHERVPV 415
                                IH ANPLA RHERVPV
Sbjct: 67  APAAVTCKADAAALCVSCDADIHSANPLASRHERVPV 103

>COL4_ARATH (Q940T9) Zinc finger protein CONSTANS-LIKE 4|
          Length = 362

 Score = 59.3 bits (142), Expect = 3e-09
 Identities = 34/86 (39%), Positives = 39/86 (45%), Gaps = 5/86 (5%)
 Frame = +2

Query: 173 AAVHCRTCXXXXXXXXXAYLCAGCD-----AGHARAGHERVWVCEVCELXXXXXXXXXXX 337
           AA++CR           A+LC  CD     A    + H RVW+CEVCE            
Sbjct: 14  AALYCRP--------DAAFLCLSCDSKVHAANKLASRHARVWMCEVCEQAPAHVTCKADA 65

Query: 338 XXXXXXXXXXIHHANPLARRHERVPV 415
                     IH ANPLARRHERVPV
Sbjct: 66  AALCVTCDRDIHSANPLARRHERVPV 91

>COL3_ARATH (Q9SK53) Zinc finger protein CONSTANS-LIKE 3|
          Length = 294

 Score = 58.5 bits (140), Expect = 6e-09
 Identities = 29/69 (42%), Positives = 34/69 (49%), Gaps = 5/69 (7%)
 Frame = +2

Query: 224 AYLCAGCD-----AGHARAGHERVWVCEVCELXXXXXXXXXXXXXXXXXXXXXIHHANPL 388
           A+LC  CD     A    + HERVW+CEVCE                      IH ANPL
Sbjct: 25  AFLCGDCDGKIHTANKLASRHERVWLCEVCEQAPAHVTCKADAAALCVTCDRDIHSANPL 84

Query: 389 ARRHERVPV 415
           +RRHERVP+
Sbjct: 85  SRRHERVPI 93

>COL1_ARATH (O50055) Zinc finger protein CONSTANS-LIKE 1|
          Length = 355

 Score = 56.6 bits (135), Expect = 2e-08
 Identities = 34/87 (39%), Positives = 39/87 (44%), Gaps = 9/87 (10%)
 Frame = +2

Query: 185 CRTCXXXXXX----XXXAYLCAGCDAG-HAR----AGHERVWVCEVCELXXXXXXXXXXX 337
           C TC             AYLC+ CDA  HA     + HERV VC+ CE            
Sbjct: 12  CDTCRSAACTVYCRADSAYLCSSCDAQVHAANRLASRHERVRVCQSCERAPAAFFCKADA 71

Query: 338 XXXXXXXXXXIHHANPLARRHERVPVL 418
                     IH ANPLARRH+RVP+L
Sbjct: 72  ASLCTTCDSEIHSANPLARRHQRVPIL 98

>COL2_ARATH (Q96502) Zinc finger protein CONSTANS-LIKE 2|
          Length = 347

 Score = 55.8 bits (133), Expect = 4e-08
 Identities = 32/87 (36%), Positives = 36/87 (41%), Gaps = 9/87 (10%)
 Frame = +2

Query: 185 CRTCXXXXXX----XXXAYLCAGCDA-----GHARAGHERVWVCEVCELXXXXXXXXXXX 337
           C TC             AYLC  CDA         + HERV VC+ CE            
Sbjct: 16  CDTCRSAACTVYCEADSAYLCTTCDARVHAANRVASRHERVRVCQSCESAPAAFLCKADA 75

Query: 338 XXXXXXXXXXIHHANPLARRHERVPVL 418
                     IH ANPLARRH+RVP+L
Sbjct: 76  ASLCTACDAEIHSANPLARRHQRVPIL 102

>CONS_ARATH (Q39057) Zinc finger protein CONSTANS|
          Length = 373

 Score = 54.7 bits (130), Expect = 9e-08
 Identities = 31/87 (35%), Positives = 36/87 (41%), Gaps = 9/87 (10%)
 Frame = +2

Query: 185 CRTCXXXXXX----XXXAYLCAGCDA-----GHARAGHERVWVCEVCELXXXXXXXXXXX 337
           C TC             AYLC  CDA         + H+RV VCE CE            
Sbjct: 20  CDTCRSNACTVYCHADSAYLCMSCDAQVHSANRVASRHKRVRVCESCERAPAAFLCEADD 79

Query: 338 XXXXXXXXXXIHHANPLARRHERVPVL 418
                     +H ANPLARRH+RVP+L
Sbjct: 80  ASLCTACDSEVHSANPLARRHQRVPIL 106

>COL16_ARATH (Q8RWD0) Zinc finger protein CONSTANS-LIKE 16|
          Length = 417

 Score = 30.4 bits (67), Expect = 1.7
 Identities = 12/14 (85%), Positives = 13/14 (92%)
 Frame = +2

Query: 368 IHHANPLARRHERV 409
           +H ANPLARRHERV
Sbjct: 44  VHSANPLARRHERV 57

>COL6_ARATH (Q8LG76) Zinc finger protein CONSTANS-LIKE 6|
          Length = 406

 Score = 30.4 bits (67), Expect = 1.7
 Identities = 12/14 (85%), Positives = 13/14 (92%)
 Frame = +2

Query: 368 IHHANPLARRHERV 409
           +H ANPLARRHERV
Sbjct: 44  VHSANPLARRHERV 57

>NEB2_HUMAN (Q96SB3) Neurabin-2 (Neurabin-II) (Spinophilin) (Protein|
           phosphatase 1 regulatory subunit 9B)
          Length = 815

 Score = 29.3 bits (64), Expect = 3.8
 Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
 Frame = -2

Query: 255 CPASH--PAHRYAPSPPPLRPSHVRQ 184
           CPA    P HR AP+ PP +P  VR+
Sbjct: 270 CPAGQQPPQHRVAPARPPPKPREVRK 295

>CYAA_NEUCR (Q01631) Adenylate cyclase (EC 4.6.1.1) (ATP pyrophosphate-lyase)|
           (Adenylyl cyclase)
          Length = 2300

 Score = 29.3 bits (64), Expect = 3.8
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 5/36 (13%)
 Frame = -2

Query: 261 RACPASHPAHRYAPSPP-----PLRPSHVRQCTAAG 169
           RA  +++PA  Y   P      P+RP +VRQ TA G
Sbjct: 593 RAAESTYPASVYVSDPSEQREVPVRPGYVRQTTAPG 628

>VP40_BHV1C (P54817) Capsid protein P40 [Contains: Assemblin (Protease) (EC|
           3.4.21.97); Capsid assembly protein]
          Length = 621

 Score = 29.3 bits (64), Expect = 3.8
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -2

Query: 267 PARACPASHPAHRYAPSPPPLRPSH 193
           P    PA  P H ++P PP   PSH
Sbjct: 463 PGEGAPAELPPHHHSPPPPHPPPSH 487

>FYB_MOUSE (O35601) FYN-binding protein (FYN-T-binding protein) (FYB-120/130)|
           (p120/p130) (SLP-76-associated phosphoprotein)
           (SLAP-130)
          Length = 819

 Score = 28.9 bits (63), Expect = 5.0
 Identities = 15/26 (57%), Positives = 15/26 (57%)
 Frame = -2

Query: 285 THTLSCPARACPASHPAHRYAPSPPP 208
           TH  S P    PASHPAH   PS PP
Sbjct: 386 THPASQPP--LPASHPAHPPVPSLPP 409

>RNC_HUMAN (Q9NRR4) Ribonuclease III (EC 3.1.26.3) (RNase III) (Drosha) (p241)|
          Length = 1374

 Score = 28.9 bits (63), Expect = 5.0
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = -2

Query: 267 PARACPASHPAHRYAPSPPPLRPSHVR 187
           P R CP     H   PS P  RP ++R
Sbjct: 14  PGRGCPRGRGGHGARPSAPSFRPQNLR 40

>Y215_ADE02 (P03291) Hypothetical protein F-215|
          Length = 215

 Score = 28.5 bits (62), Expect = 6.6
 Identities = 15/31 (48%), Positives = 15/31 (48%)
 Frame = -2

Query: 294 TSQTHTLSCPARACPASHPAHRYAPSPPPLR 202
           TS   T SCP  A     P  R  PSPP LR
Sbjct: 114 TSARSTSSCPRAAPTCPCPLSRRVPSPPYLR 144

>STHY_ARATH (Q9SYM2) Putative salt tolerance-like protein At1g78600|
          Length = 299

 Score = 28.1 bits (61), Expect = 8.6
 Identities = 14/43 (32%), Positives = 17/43 (39%)
 Frame = +2

Query: 287 CEVCELXXXXXXXXXXXXXXXXXXXXXIHHANPLARRHERVPV 415
           C VCE                      IH AN LA +H+RVP+
Sbjct: 5   CNVCEAAEATVLCCADEAALCWACDEKIHAANKLAGKHQRVPL 47

>UCP8_SCHPO (O94685) UBA domain-containing protein 8|
          Length = 884

 Score = 28.1 bits (61), Expect = 8.6
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -2

Query: 267 PARACPASHPAHRYAPSPPPLRPS 196
           PA   PA  PA ++ P PPP+R S
Sbjct: 729 PAPPTPAPTPAVKHHPPPPPVRSS 752


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,103,446
Number of Sequences: 219361
Number of extensions: 365593
Number of successful extensions: 1870
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1718
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1847
length of database: 80,573,946
effective HSP length: 100
effective length of database: 58,637,846
effective search space used: 2228238148
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)