Clone Information

BLAST Search Result

Clone Name	baet102d04
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	RSSA_SOYBN (O22518) 40S ribosomal protein SA (p40)	203	2e-52
2	RSSAA_ARATH (Q08682) 40S ribosomal protein SA-1 (p40) (Laminin r...	189	2e-48
3	RSSAB_ARATH (Q8H173) 40S ribosomal protein SA-2 (p40 protein hom...	189	4e-48
4	RSSA_CICAR (O65751) 40S ribosomal protein SA (p40)	187	9e-48
5	RSSA_DAUCA (O80377) 40S ribosomal protein SA (p40)	186	2e-47
6	RSSA_BRANA (Q9ZSR8) 40S ribosomal protein SA (p40) (Laminin rece...	186	3e-47
7	RS0B_SCHPO (Q9P546) 40S ribosomal protein S0-B	146	2e-35
8	RSSA_DROME (P38979) 40S ribosomal protein SA (p40) (Stubarista p...	145	4e-35
9	RSSA_TRIGR (P38980) 40S ribosomal protein SA (p40) (34/67 kDa la...	145	7e-35
10	RS0A_SCHPO (Q9Y7L8) 40S ribosomal protein S0-A	141	9e-34
11	RSSA_MOUSE (P14206) 40S ribosomal protein SA (p40) (34/67 kDa la...	140	2e-33
12	RSSA_URECA (P38981) 40S ribosomal protein SA (p40) (34/67 kDa la...	140	2e-33
13	RSSA_RAT (P38983) 40S ribosomal protein SA (p40) (34/67 kDa lami...	139	3e-33
14	RSSA_HUMAN (P08865) 40S ribosomal protein SA (p40) (34/67 kDa la...	139	3e-33
15	RSSA_CRIGR (P38982) 40S ribosomal protein SA (p40) (34/67 kDa la...	139	3e-33
16	RSSA_CHICK (P50890) 40S ribosomal protein SA (p40) (34/67 kDa la...	139	3e-33
17	RSSA_BOVIN (P26452) 40S ribosomal protein SA (p40) (C10 protein)	137	1e-32
18	RS0_NEUCR (Q01291) 40S ribosomal protein S0 (Ribosome-associated...	135	5e-32
19	RSSA_CHLVR (P38984) 40S ribosomal protein SA (p40) (33 kDa lamin...	135	7e-32
20	RSSA_CAEEL (P46769) Probable 40S ribosomal protein SA (p40)	131	1e-30
21	RS0_PNECA (Q01661) 40S ribosomal protein S0 (Extracellular matri...	130	1e-30
22	RS0B_YEAST (P46654) 40S ribosomal protein S0-B (Nucleic acid-bin...	129	3e-30
23	RS0A_YEAST (P32905) 40S ribosomal protein S0-A (Nucleic acid-bin...	128	8e-30
24	RS0_CANAL (O42817) 40S ribosomal protein S0	125	4e-29
25	RSSA_ECHGR (P46770) 40S ribosomal protein SA (p40) (Laminin-bind...	119	3e-27
26	RS2_SULSO (P95993) 30S ribosomal protein S2P	87	3e-17
27	RS2_PYRHO (O59295) 30S ribosomal protein S2P	82	5e-16
28	RS2_PYRFU (Q8U0F0) 30S ribosomal protein S2P	82	5e-16
29	RS2_METKA (Q8TV23) 30S ribosomal protein S2P	81	1e-15
30	RS2_PYRAB (Q9V191) 30S ribosomal protein S2P	81	1e-15
31	RS2_PYRKO (Q5JJD2) 30S ribosomal protein S2P	81	1e-15
32	RS2_METTH (O26150) 30S ribosomal protein S2P	80	3e-15
33	RS2_THEAC (P57712) 30S ribosomal protein S2P	78	1e-14
34	RS2_METJA (P54109) 30S ribosomal protein S2P	78	1e-14
35	RS2_THEVO (Q97BQ4) 30S ribosomal protein S2P	74	1e-13
36	RS2_SULTO (Q96YW5) 30S ribosomal protein S2P	72	9e-13
37	RS2_HALSA (P57713) 30S ribosomal protein S2P	72	9e-13
38	RS2_SULAC (P39478) 30S ribosomal protein S2P	70	3e-12
39	RS2_METMA (Q8PW41) 30S ribosomal protein S2P	69	5e-12
40	RS2_HALMA (P29202) 30S ribosomal protein S2P (HS2) (ORFMSG)	69	6e-12
41	RS2_METAC (Q8TT39) 30S ribosomal protein S2P	68	1e-11
42	RS2_ARCFU (O29132) 30S ribosomal protein S2P	67	3e-11
43	RS2_PICTO (Q6L1Q0) 30S ribosomal protein S2P	64	2e-10
44	RS2_PYRAE (Q8ZYE2) 30S ribosomal protein S2P	59	5e-09
45	RSSA_STRPU (P46771) 40S ribosomal protein SA (p40) (34/67 kDa la...	58	1e-08
46	RS2_AERPE (Q9YB45) 30S ribosomal protein S2P	57	2e-08
47	RT04_YEAST (P32902) Mitochondrial 40S ribosomal protein MRP4	40	0.003
48	RS2_THETN (Q8RA21) 30S ribosomal protein S2	36	0.056
49	RS2_CHLPN (Q9Z7K9) 30S ribosomal protein S2	33	0.28
50	CAC1A_RABIT (P27884) Voltage-dependent P/Q-type calcium channel ...	33	0.47
51	FOXC2_HUMAN (Q99958) Forkhead box protein C2 (Forkhead-related p...	33	0.47
52	RS2_CHLCV (Q824U3) 30S ribosomal protein S2	32	0.62
53	TMC2_HUMAN (Q8TDI7) Transmembrane cochlear-expressed protein 2	32	0.62
54	ZNF74_HUMAN (Q16587) Zinc finger protein 74 (hZNF7)	26	1.9
55	RT02_ARATH (Q9GCB9) Mitochondrial ribosomal protein S2	30	4.0
56	RS2_ONYPE (Q6YR51) 30S ribosomal protein S2	30	4.0
57	LEU21_METJA (Q58409) 3-isopropylmalate dehydratase large subunit...	29	5.2
58	NIFD_METBA (P55170) Nitrogenase molybdenum-iron protein alpha ch...	29	5.2
59	RECU_LISIN (Q92AB7) Recombination protein U homolog	29	5.2
60	YGY3_HALSQ (P21561) Hypothetical 50.6 kDa protein in the 5'regio...	29	6.8
61	OTX1_RAT (Q63410) Homeobox protein OTX1	29	6.8
62	OTX1_MOUSE (P80205) Homeobox protein OTX1	29	6.8
63	RECU_LISMO (Q8Y611) Recombination protein U homolog	29	6.8
64	RECU_LISMF (Q71YC4) Recombination protein U homolog	29	6.8
65	JPH3_HUMAN (Q8WXH2) Junctophilin-3 (Junctophilin type 3) (JP-3)	29	6.8
66	OTX1_HUMAN (P32242) Homeobox protein OTX1	29	6.8
67	RS1_HELPY (P56008) 30S ribosomal protein S1	28	8.9
68	YR229_MIMIV (Q5UQC4) Putative ankyrin repeat protein R229	28	8.9
69	RS1_HELPJ (Q9ZKF6) 30S ribosomal protein S1	28	8.9
70	NOP3_YEAST (Q01560) Nucleolar protein 3 (Mitochondrial targeting...	28	8.9
71	IF2_RHOPA (Q6NCN5) Translation initiation factor IF-2	28	8.9

>RSSA_SOYBN (O22518) 40S ribosomal protein SA (p40)|
          Length = 310

 Score =  203 bits (516), Expect = 2e-52
 Identities = 100/116 (86%), Positives = 106/116 (91%)
 Frame = +1

Query: 106 TMAAAAGEAPRALSQKEQDVQMMLAADVHLGTKNCDFQMERYAYKRRSDGIYIINLGKTW 285
           T   AA   PR LSQKE D+QMMLAADVHLGTKNCDFQMERY +KRR+DGIYIINLGKTW
Sbjct: 3   TATNAAAAPPRQLSQKEADIQMMLAADVHLGTKNCDFQMERYIFKRRNDGIYIINLGKTW 62

Query: 286 EKLQLAARVIVAIENPQDIIVQSARPYGQRAVLKFAQHTGANAIAGRHTPGTFTTR 453
           EKLQLAARVIVAIENPQDIIVQSARPYGQRAVLKFAQ+TGA+AIAGRHTPGTFT +
Sbjct: 63  EKLQLAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQ 118

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>RSSAA_ARATH (Q08682) 40S ribosomal protein SA-1 (p40) (Laminin receptor|
           homolog)
          Length = 298

 Score =  189 bits (481), Expect = 2e-48
 Identities = 92/115 (80%), Positives = 102/115 (88%)
 Frame = +1

Query: 109 MAAAAGEAPRALSQKEQDVQMMLAADVHLGTKNCDFQMERYAYKRRSDGIYIINLGKTWE 288
           MA     +   LSQKE DV+MM AA+VHLGTKNC++QMERY +KRR+DGIYI NLGKTWE
Sbjct: 1   MATNGSASSAQLSQKEADVRMMCAAEVHLGTKNCNYQMERYVFKRRNDGIYIFNLGKTWE 60

Query: 289 KLQLAARVIVAIENPQDIIVQSARPYGQRAVLKFAQHTGANAIAGRHTPGTFTTR 453
           KLQ+AARVIVAIENPQDIIVQSARPYGQRAVLKFAQ+TGANAIAGRHTPGTFT +
Sbjct: 61  KLQMAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGANAIAGRHTPGTFTNQ 115

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>RSSAB_ARATH (Q8H173) 40S ribosomal protein SA-2 (p40 protein homolog)|
          Length = 280

 Score =  189 bits (479), Expect = 4e-48
 Identities = 90/114 (78%), Positives = 102/114 (89%)
 Frame = +1

Query: 112 AAAAGEAPRALSQKEQDVQMMLAADVHLGTKNCDFQMERYAYKRRSDGIYIINLGKTWEK 291
           A     A R +S+KE D+QMML+ADVHLGTKNC++QMERY +KRR DGIYIINLGKTW+K
Sbjct: 3   ANGVATAGRQVSEKEADIQMMLSADVHLGTKNCNYQMERYVFKRRDDGIYIINLGKTWDK 62

Query: 292 LQLAARVIVAIENPQDIIVQSARPYGQRAVLKFAQHTGANAIAGRHTPGTFTTR 453
           LQ+AARVIVAIENP+DIIVQSARPYGQRAVLKFAQ+TG NAIAGRHTPGTFT +
Sbjct: 63  LQMAARVIVAIENPKDIIVQSARPYGQRAVLKFAQYTGVNAIAGRHTPGTFTNQ 116

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>RSSA_CICAR (O65751) 40S ribosomal protein SA (p40)|
          Length = 300

 Score =  187 bits (476), Expect = 9e-48
 Identities = 90/106 (84%), Positives = 100/106 (94%)
 Frame = +1

Query: 136 RALSQKEQDVQMMLAADVHLGTKNCDFQMERYAYKRRSDGIYIINLGKTWEKLQLAARVI 315
           R L+QKE D+QMMLAADVHLGTKNC+FQMERY +KRR+DGIYIINLGKTW+KL LAAR+I
Sbjct: 9   RQLTQKEADIQMMLAADVHLGTKNCNFQMERYIFKRRNDGIYIINLGKTWDKLNLAARII 68

Query: 316 VAIENPQDIIVQSARPYGQRAVLKFAQHTGANAIAGRHTPGTFTTR 453
           VAIEN QDIIVQSARPYGQRAVLKFAQ+TGA+AIAGRHTPGTFT +
Sbjct: 69  VAIENSQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQ 114

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>RSSA_DAUCA (O80377) 40S ribosomal protein SA (p40)|
          Length = 297

 Score =  186 bits (473), Expect = 2e-47
 Identities = 90/106 (84%), Positives = 98/106 (92%)
 Frame = +1

Query: 136 RALSQKEQDVQMMLAADVHLGTKNCDFQMERYAYKRRSDGIYIINLGKTWEKLQLAARVI 315
           R LS  E D+QMM AA+VHLGTKNCDFQMERY +KRR+DGIYIINLGKTWEKL LAARVI
Sbjct: 6   RELSTMEADIQMMCAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLMLAARVI 65

Query: 316 VAIENPQDIIVQSARPYGQRAVLKFAQHTGANAIAGRHTPGTFTTR 453
           V+IENPQDIIVQSARPYGQRAVLKFAQ+TGA+AIAGRHTPGTFT +
Sbjct: 66  VSIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQ 111

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>RSSA_BRANA (Q9ZSR8) 40S ribosomal protein SA (p40) (Laminin receptor-like|
           protein)
          Length = 292

 Score =  186 bits (472), Expect = 3e-47
 Identities = 89/111 (80%), Positives = 99/111 (89%)
 Frame = +1

Query: 121 AGEAPRALSQKEQDVQMMLAADVHLGTKNCDFQMERYAYKRRSDGIYIINLGKTWEKLQL 300
           A      LSQKE D++MM AA+VHLGTKNC++QMERY +KRR+DGIYI NLGKTWEKL +
Sbjct: 2   AANGSTQLSQKEADIKMMCAAEVHLGTKNCNYQMERYVFKRRNDGIYIFNLGKTWEKLMM 61

Query: 301 AARVIVAIENPQDIIVQSARPYGQRAVLKFAQHTGANAIAGRHTPGTFTTR 453
           AARVIVAIENPQDIIVQSARPYGQRAVLKFAQ+TGANAIAGRHTPGTFT +
Sbjct: 62  AARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGANAIAGRHTPGTFTNQ 112

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>RS0B_SCHPO (Q9P546) 40S ribosomal protein S0-B|
          Length = 287

 Score =  146 bits (369), Expect = 2e-35
 Identities = 70/105 (66%), Positives = 83/105 (79%)
 Frame = +1

Query: 133 PRALSQKEQDVQMMLAADVHLGTKNCDFQMERYAYKRRSDGIYIINLGKTWEKLQLAARV 312
           P  L+  + D++ +LAAD H+G+KN + +ME Y +KRRSDGI+IINLGKTWEKL LAARV
Sbjct: 8   PSVLNATDDDIKNLLAADSHIGSKNLEVRMENYVWKRRSDGIHIINLGKTWEKLVLAARV 67

Query: 313 IVAIENPQDIIVQSARPYGQRAVLKFAQHTGANAIAGRHTPGTFT 447
           I  IENP D+ V S+RPYG RAVLKFA HTGA AIAGR TPG FT
Sbjct: 68  IATIENPADVCVISSRPYGHRAVLKFAAHTGATAIAGRFTPGNFT 112

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>RSSA_DROME (P38979) 40S ribosomal protein SA (p40) (Stubarista protein)|
           (Laminin receptor homolog) (K14)
          Length = 270

 Score =  145 bits (367), Expect = 4e-35
 Identities = 70/107 (65%), Positives = 84/107 (78%)
 Frame = +1

Query: 142 LSQKEQDVQMMLAADVHLGTKNCDFQMERYAYKRRSDGIYIINLGKTWEKLQLAARVIVA 321
           LS KE D+  ML A  HLG++N +FQME+Y YKRR+DG+ I+NLGKTWEKLQLAAR IVA
Sbjct: 8   LSLKEDDITKMLVATTHLGSENVNFQMEQYVYKRRADGVNILNLGKTWEKLQLAARAIVA 67

Query: 322 IENPQDIIVQSARPYGQRAVLKFAQHTGANAIAGRHTPGTFTTRCRP 462
           I+NP DI V S+RP GQRAVLKFA++T    IAGR TPG FT + +P
Sbjct: 68  IDNPSDIFVISSRPIGQRAVLKFAKYTDTTPIAGRFTPGAFTNQIQP 114

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>RSSA_TRIGR (P38980) 40S ribosomal protein SA (p40) (34/67 kDa laminin-binding|
           protein)
          Length = 316

 Score =  145 bits (365), Expect = 7e-35
 Identities = 68/104 (65%), Positives = 82/104 (78%)
 Frame = +1

Query: 142 LSQKEQDVQMMLAADVHLGTKNCDFQMERYAYKRRSDGIYIINLGKTWEKLQLAARVIVA 321
           L+ KE DVQ  LA+  H+G+ N D+QM +Y YKR+ DG YIINL +TWEKL +AAR+IVA
Sbjct: 8   LALKEDDVQKFLASGAHIGSSNLDYQMTQYVYKRKPDGTYIINLRRTWEKLLMAARIIVA 67

Query: 322 IENPQDIIVQSARPYGQRAVLKFAQHTGANAIAGRHTPGTFTTR 453
           IENP D+ V S+RPYGQRAVLKF  HTGA  IAGR+TPGTFT +
Sbjct: 68  IENPADVCVISSRPYGQRAVLKFGAHTGATPIAGRYTPGTFTNQ 111

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>RS0A_SCHPO (Q9Y7L8) 40S ribosomal protein S0-A|
          Length = 292

 Score =  141 bits (355), Expect = 9e-34
 Identities = 65/105 (61%), Positives = 82/105 (78%)
 Frame = +1

Query: 133 PRALSQKEQDVQMMLAADVHLGTKNCDFQMERYAYKRRSDGIYIINLGKTWEKLQLAARV 312
           P  L+  ++D++ +LAA+ H+G+KN + +M+ Y +KRRSDG++I+NLGKTWEKL LAARV
Sbjct: 7   PNILNATDEDIKQLLAANCHIGSKNLEVRMDNYVWKRRSDGVHILNLGKTWEKLVLAARV 66

Query: 313 IVAIENPQDIIVQSARPYGQRAVLKFAQHTGANAIAGRHTPGTFT 447
           I  IENP D+ V S R YG RAVLKFA HTGA AIAGR TPG FT
Sbjct: 67  IATIENPADVCVVSTRTYGHRAVLKFAAHTGATAIAGRFTPGNFT 111

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>RSSA_MOUSE (P14206) 40S ribosomal protein SA (p40) (34/67 kDa laminin|
           receptor)
          Length = 294

 Score =  140 bits (353), Expect = 2e-33
 Identities = 72/104 (69%), Positives = 80/104 (76%)
 Frame = +1

Query: 142 LSQKEQDVQMMLAADVHLGTKNCDFQMERYAYKRRSDGIYIINLGKTWEKLQLAARVIVA 321
           L  KE+DV  +LAA  HLG  N DFQME+Y YKR+SDGIYIINL +TWEKL LAAR IVA
Sbjct: 7   LQMKEEDVLKLLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLLAARAIVA 66

Query: 322 IENPQDIIVQSARPYGQRAVLKFAQHTGANAIAGRHTPGTFTTR 453
           IENP D+ V S+R  GQRAVLKFA  TGA  IAGR TPGTFT +
Sbjct: 67  IENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQ 110

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>RSSA_URECA (P38981) 40S ribosomal protein SA (p40) (34/67 kDa laminin-binding|
           protein)
          Length = 317

 Score =  140 bits (353), Expect = 2e-33
 Identities = 71/104 (68%), Positives = 78/104 (75%)
 Frame = +1

Query: 142 LSQKEQDVQMMLAADVHLGTKNCDFQMERYAYKRRSDGIYIINLGKTWEKLQLAARVIVA 321
           L+ KE+DV   LA   HLG  N DFQME+Y YKRR DG  IIN+ KTWEK+ LAAR I A
Sbjct: 8   LALKEEDVTKFLACASHLGANNVDFQMEQYVYKRRPDGTSIINVRKTWEKVLLAARAIAA 67

Query: 322 IENPQDIIVQSARPYGQRAVLKFAQHTGANAIAGRHTPGTFTTR 453
           IENP DI V SARPYGQRAVLKFA +TGA  IAGR TPGTFT +
Sbjct: 68  IENPADICVISARPYGQRAVLKFAHYTGATPIAGRFTPGTFTNQ 111

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>RSSA_RAT (P38983) 40S ribosomal protein SA (p40) (34/67 kDa laminin|
           receptor)
          Length = 294

 Score =  139 bits (351), Expect = 3e-33
 Identities = 72/104 (69%), Positives = 79/104 (75%)
 Frame = +1

Query: 142 LSQKEQDVQMMLAADVHLGTKNCDFQMERYAYKRRSDGIYIINLGKTWEKLQLAARVIVA 321
           L  KE+DV   LAA  HLG  N DFQME+Y YKR+SDGIYIINL +TWEKL LAAR IVA
Sbjct: 7   LQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLLAARAIVA 66

Query: 322 IENPQDIIVQSARPYGQRAVLKFAQHTGANAIAGRHTPGTFTTR 453
           IENP D+ V S+R  GQRAVLKFA  TGA  IAGR TPGTFT +
Sbjct: 67  IENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQ 110

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>RSSA_HUMAN (P08865) 40S ribosomal protein SA (p40) (34/67 kDa laminin|
           receptor) (Colon carcinoma laminin-binding protein)
           (NEM/1CHD4) (Multidrug resistance-associated protein
           MGr1-Ag)
          Length = 294

 Score =  139 bits (351), Expect = 3e-33
 Identities = 72/104 (69%), Positives = 79/104 (75%)
 Frame = +1

Query: 142 LSQKEQDVQMMLAADVHLGTKNCDFQMERYAYKRRSDGIYIINLGKTWEKLQLAARVIVA 321
           L  KE+DV   LAA  HLG  N DFQME+Y YKR+SDGIYIINL +TWEKL LAAR IVA
Sbjct: 7   LQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLLAARAIVA 66

Query: 322 IENPQDIIVQSARPYGQRAVLKFAQHTGANAIAGRHTPGTFTTR 453
           IENP D+ V S+R  GQRAVLKFA  TGA  IAGR TPGTFT +
Sbjct: 67  IENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQ 110

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>RSSA_CRIGR (P38982) 40S ribosomal protein SA (p40) (34/67 kDa laminin|
           receptor)
          Length = 294

 Score =  139 bits (351), Expect = 3e-33
 Identities = 72/104 (69%), Positives = 79/104 (75%)
 Frame = +1

Query: 142 LSQKEQDVQMMLAADVHLGTKNCDFQMERYAYKRRSDGIYIINLGKTWEKLQLAARVIVA 321
           L  KE+DV   LAA  HLG  N DFQME+Y YKR+SDGIYIINL +TWEKL LAAR IVA
Sbjct: 7   LQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLLAARAIVA 66

Query: 322 IENPQDIIVQSARPYGQRAVLKFAQHTGANAIAGRHTPGTFTTR 453
           IENP D+ V S+R  GQRAVLKFA  TGA  IAGR TPGTFT +
Sbjct: 67  IENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQ 110

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>RSSA_CHICK (P50890) 40S ribosomal protein SA (p40) (34/67 kDa laminin|
           receptor) (37LRP)
          Length = 296

 Score =  139 bits (351), Expect = 3e-33
 Identities = 72/104 (69%), Positives = 79/104 (75%)
 Frame = +1

Query: 142 LSQKEQDVQMMLAADVHLGTKNCDFQMERYAYKRRSDGIYIINLGKTWEKLQLAARVIVA 321
           L  KE+DV   LAA  HLG  N DFQME+Y YKR+SDGIYIINL +TWEKL LAAR IVA
Sbjct: 8   LQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLLAARAIVA 67

Query: 322 IENPQDIIVQSARPYGQRAVLKFAQHTGANAIAGRHTPGTFTTR 453
           IENP D+ V S+R  GQRAVLKFA  TGA  IAGR TPGTFT +
Sbjct: 68  IENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQ 111

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>RSSA_BOVIN (P26452) 40S ribosomal protein SA (p40) (C10 protein)|
          Length = 294

 Score =  137 bits (346), Expect = 1e-32
 Identities = 71/104 (68%), Positives = 78/104 (75%)
 Frame = +1

Query: 142 LSQKEQDVQMMLAADVHLGTKNCDFQMERYAYKRRSDGIYIINLGKTWEKLQLAARVIVA 321
           L  KE+DV   LAA  HLG  N DFQME+Y YKR+SDGIYIINL +TWEKL LAAR IVA
Sbjct: 7   LQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLLAARAIVA 66

Query: 322 IENPQDIIVQSARPYGQRAVLKFAQHTGANAIAGRHTPGTFTTR 453
           IENP D+ V S+R  GQRAVLKFA  TGA  IAGR TPG FT +
Sbjct: 67  IENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGNFTNQ 110

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>RS0_NEUCR (Q01291) 40S ribosomal protein S0 (Ribosome-associated protein 1)|
          Length = 290

 Score =  135 bits (340), Expect = 5e-32
 Identities = 64/110 (58%), Positives = 80/110 (72%)
 Frame = +1

Query: 118 AAGEAPRALSQKEQDVQMMLAADVHLGTKNCDFQMERYAYKRRSDGIYIINLGKTWEKLQ 297
           A    P   +    D++ +LAA  H+G+KN    M+ Y +K R+DG+ I+N+GKTWEK+ 
Sbjct: 2   APANLPSIFNATSTDIEQLLAAQCHIGSKNLGVHMQPYLWKTRADGVNILNVGKTWEKIV 61

Query: 298 LAARVIVAIENPQDIIVQSARPYGQRAVLKFAQHTGANAIAGRHTPGTFT 447
           LAAR+I AI+NP DI V SARPYGQRAVLKFA HTGA AIAGR TPG+FT
Sbjct: 62  LAARIIAAIDNPADICVISARPYGQRAVLKFAAHTGAQAIAGRFTPGSFT 111

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>RSSA_CHLVR (P38984) 40S ribosomal protein SA (p40) (33 kDa laminin-binding|
           protein)
          Length = 293

 Score =  135 bits (339), Expect = 7e-32
 Identities = 69/105 (65%), Positives = 80/105 (76%)
 Frame = +1

Query: 139 ALSQKEQDVQMMLAADVHLGTKNCDFQMERYAYKRRSDGIYIINLGKTWEKLQLAARVIV 318
           ALS KE+DV   LAA VHLG+ N     + Y +KR+SDGI+IINL KTWEKL LAAR+I 
Sbjct: 7   ALSLKEEDVVKFLAAGVHLGSTNVGSSCQGYVFKRKSDGIHIINLRKTWEKLILAARIIA 66

Query: 319 AIENPQDIIVQSARPYGQRAVLKFAQHTGANAIAGRHTPGTFTTR 453
           +IENP D+ V S+RPYG RAVLKFAQ TGA  IAGR TPGTFT +
Sbjct: 67  SIENPADVCVISSRPYGTRAVLKFAQSTGAIPIAGRFTPGTFTNQ 111

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>RSSA_CAEEL (P46769) Probable 40S ribosomal protein SA (p40)|
          Length = 275

 Score =  131 bits (329), Expect = 1e-30
 Identities = 66/112 (58%), Positives = 81/112 (72%)
 Frame = +1

Query: 118 AAGEAPRALSQKEQDVQMMLAADVHLGTKNCDFQMERYAYKRRSDGIYIINLGKTWEKLQ 297
           + G A  AL+  E+DV  +LA   HLG+ N +FQM++Y YKRR DG  IIN+ KTWEKL 
Sbjct: 1   SGGAAHSALT--EEDVMKLLATQAHLGSTNLNFQMQQYVYKRRFDGPNIINVKKTWEKLL 58

Query: 298 LAARVIVAIENPQDIIVQSARPYGQRAVLKFAQHTGANAIAGRHTPGTFTTR 453
           LAAR I A+ENP D++V SARPY QRA+LKFA HTGA AI GR +PG  T +
Sbjct: 59  LAARAIAAVENPADVVVVSARPYAQRALLKFAAHTGATAIFGRFSPGCLTNQ 110

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>RS0_PNECA (Q01661) 40S ribosomal protein S0 (Extracellular matrix receptor|
           protein)
          Length = 295

 Score =  130 bits (328), Expect = 1e-30
 Identities = 61/102 (59%), Positives = 82/102 (80%), Gaps = 1/102 (0%)
 Frame = +1

Query: 145 SQKEQDVQMMLAADVHLGTKNCDFQMERYAYKRRSDGIYIINLGKTWEKLQLAARVIVAI 324
           +Q   D++M+++A+ H+G++NC+ +ME Y +KRR+DG++IINLGK WEKL LAAR+IV I
Sbjct: 6   AQPAADIEMLISANCHIGSRNCELRMEPYVFKRRADGVHIINLGKRWEKLILAARIIVTI 65

Query: 325 ENPQDIIVQSARPYGQRAVLKFAQHTGA-NAIAGRHTPGTFT 447
           ENP DII  S+R YGQRAV K+A HTGA  AI+ R TPG+FT
Sbjct: 66  ENPTDIIAVSSRSYGQRAVHKYALHTGAREAISSRFTPGSFT 107

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>RS0B_YEAST (P46654) 40S ribosomal protein S0-B (Nucleic acid-binding protein|
           NAB1B)
          Length = 251

 Score =  129 bits (325), Expect = 3e-30
 Identities = 59/105 (56%), Positives = 75/105 (71%)
 Frame = +1

Query: 133 PRALSQKEQDVQMMLAADVHLGTKNCDFQMERYAYKRRSDGIYIINLGKTWEKLQLAARV 312
           P       +D Q++LAA+ HLG +N     E Y +  R DG+++IN+GKTWEKL LAAR+
Sbjct: 3   PATFDLTPEDAQLLLAANTHLGARNVQVHQEPYVFNARPDGVHVINVGKTWEKLVLAARI 62

Query: 313 IVAIENPQDIIVQSARPYGQRAVLKFAQHTGANAIAGRHTPGTFT 447
           I AI NP+D++  S+R YGQRAVLKFA HTGA  IAGR TPG+FT
Sbjct: 63  IAAIPNPEDVVAISSRTYGQRAVLKFAAHTGATPIAGRFTPGSFT 107

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>RS0A_YEAST (P32905) 40S ribosomal protein S0-A (Nucleic acid-binding protein|
           NAB1A)
          Length = 251

 Score =  128 bits (321), Expect = 8e-30
 Identities = 58/105 (55%), Positives = 75/105 (71%)
 Frame = +1

Query: 133 PRALSQKEQDVQMMLAADVHLGTKNCDFQMERYAYKRRSDGIYIINLGKTWEKLQLAARV 312
           P       +D Q++LAA+ HLG +N     E Y +  R DG+++IN+GKTWEKL LAAR+
Sbjct: 3   PATFDLTPEDAQLLLAANTHLGARNVQVHQEPYVFNARPDGVHVINVGKTWEKLVLAARI 62

Query: 313 IVAIENPQDIIVQSARPYGQRAVLKFAQHTGANAIAGRHTPGTFT 447
           I AI NP+D++  S+R +GQRAVLKFA HTGA  IAGR TPG+FT
Sbjct: 63  IAAIPNPEDVVAISSRTFGQRAVLKFAAHTGATPIAGRFTPGSFT 107

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>RS0_CANAL (O42817) 40S ribosomal protein S0|
          Length = 253

 Score =  125 bits (315), Expect = 4e-29
 Identities = 60/105 (57%), Positives = 75/105 (71%)
 Frame = +1

Query: 133 PRALSQKEQDVQMMLAADVHLGTKNCDFQMERYAYKRRSDGIYIINLGKTWEKLQLAARV 312
           P +     +D +++LAA+VHLG KN     + Y YK R DG+ IIN+GKTWEK+ LAAR+
Sbjct: 4   PASFDLTPEDAKLLLAANVHLGAKNVQVHNKPYVYKTRPDGMNIINIGKTWEKIVLAARI 63

Query: 313 IVAIENPQDIIVQSARPYGQRAVLKFAQHTGANAIAGRHTPGTFT 447
           I A+ N  D+ V S+R +GQRAVLKFA HTGA AIAGR TPG FT
Sbjct: 64  IAAVPNASDVAVCSSRTFGQRAVLKFAAHTGATAIAGRFTPGNFT 108

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>RSSA_ECHGR (P46770) 40S ribosomal protein SA (p40) (Laminin-binding protein)|
          Length = 268

 Score =  119 bits (299), Expect = 3e-27
 Identities = 54/105 (51%), Positives = 74/105 (70%)
 Frame = +1

Query: 139 ALSQKEQDVQMMLAADVHLGTKNCDFQMERYAYKRRSDGIYIINLGKTWEKLQLAARVIV 318
           AL  KE D+++M+AA VHLG+ N ++QM++Y Y R  +G +II+L KTWEKL LAAR I 
Sbjct: 7   ALELKEDDIRLMVAAKVHLGSTNANYQMQQYVYDRNDEGNHIIHLNKTWEKLLLAARAIC 66

Query: 319 AIENPQDIIVQSARPYGQRAVLKFAQHTGANAIAGRHTPGTFTTR 453
           AIENP D+++   +P  QR  LKF  +TG  ++ GR TPG FT +
Sbjct: 67  AIENPADVVIIGGQPTWQRGALKFGHYTGTTSVPGRFTPGAFTNQ 111

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>RS2_SULSO (P95993) 30S ribosomal protein S2P|
          Length = 231

 Score = 86.7 bits (213), Expect = 3e-17
 Identities = 42/95 (44%), Positives = 65/95 (68%)
 Frame = +1

Query: 163 VQMMLAADVHLGTKNCDFQMERYAYKRRSDGIYIINLGKTWEKLQLAARVIVAIENPQDI 342
           V   L+A VH+GT +C   ME + Y+ R++G+Y++++ K  E+L++AA+ +   + PQDI
Sbjct: 39  VDTYLSAGVHIGTHSCTKYMESFVYRVRAEGLYVLDVRKIDERLRIAAKFLSRYD-PQDI 97

Query: 343 IVQSARPYGQRAVLKFAQHTGANAIAGRHTPGTFT 447
           IV ++RPY  R V KFA+  G+ A+ GR  PGTFT
Sbjct: 98  IVVASRPYAYRPVQKFAEVVGSRALVGRIIPGTFT 132

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>RS2_PYRHO (O59295) 30S ribosomal protein S2P|
          Length = 202

 Score = 82.4 bits (202), Expect = 5e-16
 Identities = 41/91 (45%), Positives = 60/91 (65%)
 Frame = +1

Query: 175 LAADVHLGTKNCDFQMERYAYKRRSDGIYIINLGKTWEKLQLAARVIVAIENPQDIIVQS 354
           LAA VH+GT+     M+++ Y+ R DG+Y++++ KT E+L++A + +   E PQ I+  S
Sbjct: 13  LAAGVHIGTQQKTKDMKKFIYRVRQDGLYVLDVRKTDERLKVAGKFLARFE-PQSILAVS 71

Query: 355 ARPYGQRAVLKFAQHTGANAIAGRHTPGTFT 447
            R YGQ+ V KF + TGA AI GR  PGT T
Sbjct: 72  VRLYGQKPVKKFGEVTGARAIPGRFLPGTMT 102

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>RS2_PYRFU (Q8U0F0) 30S ribosomal protein S2P|
          Length = 202

 Score = 82.4 bits (202), Expect = 5e-16
 Identities = 41/91 (45%), Positives = 60/91 (65%)
 Frame = +1

Query: 175 LAADVHLGTKNCDFQMERYAYKRRSDGIYIINLGKTWEKLQLAARVIVAIENPQDIIVQS 354
           LAA VH+GT+     M+++ Y+ R DG+Y++++ KT E+L++A + +   E PQ I+  S
Sbjct: 13  LAAGVHIGTQQKTKDMKKFIYRVRQDGLYVLDVRKTDERLKVAGKFLAKFE-PQSILAVS 71

Query: 355 ARPYGQRAVLKFAQHTGANAIAGRHTPGTFT 447
            R YGQ+ V KF + TGA AI GR  PGT T
Sbjct: 72  VRLYGQKPVKKFGEVTGARAIPGRFLPGTMT 102

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>RS2_METKA (Q8TV23) 30S ribosomal protein S2P|
          Length = 203

 Score = 81.3 bits (199), Expect = 1e-15
 Identities = 41/91 (45%), Positives = 62/91 (68%)
 Frame = +1

Query: 175 LAADVHLGTKNCDFQMERYAYKRRSDGIYIINLGKTWEKLQLAARVIVAIENPQDIIVQS 354
           LAA VH+GT+     ME + Y+ R+DG+++I++ KT E++++AA  + ++ N  +I+V S
Sbjct: 15  LAAGVHIGTQQKTKDMEPFIYRTRADGLHVIDVRKTDERIRIAANFL-SMYNTDEILVVS 73

Query: 355 ARPYGQRAVLKFAQHTGANAIAGRHTPGTFT 447
            R YGQ+ V KFA+ TG  AI GR  PGT T
Sbjct: 74  RRYYGQKPVSKFAEATGTTAIPGRFVPGTLT 104

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>RS2_PYRAB (Q9V191) 30S ribosomal protein S2P|
          Length = 202

 Score = 81.3 bits (199), Expect = 1e-15
 Identities = 40/91 (43%), Positives = 60/91 (65%)
 Frame = +1

Query: 175 LAADVHLGTKNCDFQMERYAYKRRSDGIYIINLGKTWEKLQLAARVIVAIENPQDIIVQS 354
           LAA VH+GT+     M+++ Y+ R DG+Y++++ KT E+L++A + +   + PQ I+  S
Sbjct: 13  LAAGVHIGTQQKTKDMKKFIYRVRQDGLYVLDVRKTDERLKVAGKFLARFD-PQSILAVS 71

Query: 355 ARPYGQRAVLKFAQHTGANAIAGRHTPGTFT 447
            R YGQ+ V KF + TGA AI GR  PGT T
Sbjct: 72  VRLYGQKPVKKFGEVTGARAIPGRFLPGTMT 102

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>RS2_PYRKO (Q5JJD2) 30S ribosomal protein S2P|
          Length = 201

 Score = 81.3 bits (199), Expect = 1e-15
 Identities = 40/91 (43%), Positives = 60/91 (65%)
 Frame = +1

Query: 175 LAADVHLGTKNCDFQMERYAYKRRSDGIYIINLGKTWEKLQLAARVIVAIENPQDIIVQS 354
           LAA VH+GT+     M+++ Y+ R DG+Y++++ KT E+L++A + +   + P+ I+  S
Sbjct: 12  LAAGVHIGTQQKTKDMKKFIYRVRQDGLYVLDVRKTDERLRVAGKFLAKFD-PESILAVS 70

Query: 355 ARPYGQRAVLKFAQHTGANAIAGRHTPGTFT 447
            R YGQR V KF + TGA AI GR  PGT T
Sbjct: 71  VRLYGQRPVKKFGEVTGAKAIPGRFLPGTMT 101

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>RS2_METTH (O26150) 30S ribosomal protein S2P|
          Length = 198

 Score = 80.1 bits (196), Expect = 3e-15
 Identities = 40/91 (43%), Positives = 58/91 (63%)
 Frame = +1

Query: 175 LAADVHLGTKNCDFQMERYAYKRRSDGIYIINLGKTWEKLQLAARVIVAIENPQDIIVQS 354
           LAA +H+GT+     ME+Y Y+ RSDG+Y++++ KT +++  A++ +   E P DI+  S
Sbjct: 12  LAAGLHIGTQQKTADMEKYIYRVRSDGLYVLDIRKTNDRVIAASKFLSKYE-PDDILAVS 70

Query: 355 ARPYGQRAVLKFAQHTGANAIAGRHTPGTFT 447
            R YGQ  V KF + TGA  I GR  PGT T
Sbjct: 71  TRQYGQEPVRKFGEVTGARTIPGRFIPGTLT 101

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>RS2_THEAC (P57712) 30S ribosomal protein S2P|
          Length = 199

 Score = 78.2 bits (191), Expect = 1e-14
 Identities = 41/87 (47%), Positives = 57/87 (65%)
 Frame = +1

Query: 187 VHLGTKNCDFQMERYAYKRRSDGIYIINLGKTWEKLQLAARVIVAIENPQDIIVQSARPY 366
           VH+GT+     M+ Y +K R+DG+YI+++ KT  KL +A +++   E PQDI+V + R Y
Sbjct: 17  VHIGTQVKSSDMKPYIFKIRNDGLYILDVKKTNSKLIVAGKMLARFE-PQDILVVAQRQY 75

Query: 367 GQRAVLKFAQHTGANAIAGRHTPGTFT 447
             R V KFA+ TGA AI GR  PGT T
Sbjct: 76  AFRPVAKFAEVTGATAITGRFNPGTLT 102

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>RS2_METJA (P54109) 30S ribosomal protein S2P|
          Length = 222

 Score = 77.8 bits (190), Expect = 1e-14
 Identities = 40/104 (38%), Positives = 67/104 (64%), Gaps = 2/104 (1%)
 Frame = +1

Query: 142 LSQKEQDVQM--MLAADVHLGTKNCDFQMERYAYKRRSDGIYIINLGKTWEKLQLAARVI 315
           +S+KE  V +   LA+ +H+GT+     ME++ Y+ RSDG+Y++++ KT E+L++AA+ +
Sbjct: 1   MSEKELLVPLDTYLASGIHIGTQQKTKDMEKFIYRVRSDGLYVLDVRKTDERLRIAAKFL 60

Query: 316 VAIENPQDIIVQSARPYGQRAVLKFAQHTGANAIAGRHTPGTFT 447
              E P+DI+  S R Y    + +F ++TG   +AGR  PGT T
Sbjct: 61  ARYE-PEDILAVSRRIYTMGPLEEFGKYTGIRTVAGRFVPGTLT 103

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>RS2_THEVO (Q97BQ4) 30S ribosomal protein S2P|
          Length = 199

 Score = 74.3 bits (181), Expect = 1e-13
 Identities = 41/87 (47%), Positives = 58/87 (66%)
 Frame = +1

Query: 187 VHLGTKNCDFQMERYAYKRRSDGIYIINLGKTWEKLQLAARVIVAIENPQDIIVQSARPY 366
           VH+GT+     M+ Y +K R+DG+YI+++ KT  KL +AA  ++A  +PQDI+V + R Y
Sbjct: 17  VHIGTQVKSSDMKPYIFKIRNDGLYILDVKKTNSKL-IAAGKMLARFDPQDILVVAQRQY 75

Query: 367 GQRAVLKFAQHTGANAIAGRHTPGTFT 447
             R V KFA+ TGA +I GR  PGT T
Sbjct: 76  AFRPVAKFAEVTGAVSITGRFNPGTLT 102

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>RS2_SULTO (Q96YW5) 30S ribosomal protein S2P|
          Length = 225

 Score = 71.6 bits (174), Expect = 9e-13
 Identities = 35/91 (38%), Positives = 56/91 (61%)
 Frame = +1

Query: 175 LAADVHLGTKNCDFQMERYAYKRRSDGIYIINLGKTWEKLQLAARVIVAIENPQDIIVQS 354
           L+A VH+GT  C   ME++ Y+ R +G+Y++++ K  E+L++AAR +     P++I+  +
Sbjct: 37  LSAGVHIGTHTCTKYMEKFVYRVRPEGLYVLDVRKIDERLRIAARFLSRF-TPENILAVT 95

Query: 355 ARPYGQRAVLKFAQHTGANAIAGRHTPGTFT 447
           +RPY    V KFA+     AI GR  PG  T
Sbjct: 96  SRPYAFTPVTKFAEVIRGRAIVGRFPPGILT 126

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>RS2_HALSA (P57713) 30S ribosomal protein S2P|
          Length = 249

 Score = 71.6 bits (174), Expect = 9e-13
 Identities = 39/106 (36%), Positives = 66/106 (62%), Gaps = 4/106 (3%)
 Frame = +1

Query: 142 LSQKEQD----VQMMLAADVHLGTKNCDFQMERYAYKRRSDGIYIINLGKTWEKLQLAAR 309
           +S +E D    V+  L A VH+GT+     M+R+ ++ R+DG+Y++++ +T ++++ AA 
Sbjct: 53  MSDEEADLLIPVEDYLGAGVHIGTQQKTNDMDRFIHRVRTDGLYVLDVSRTDDRVRTAAD 112

Query: 310 VIVAIENPQDIIVQSARPYGQRAVLKFAQHTGANAIAGRHTPGTFT 447
             +A  +P+ I+V S+R YG+    KFA+  GA A  GR  PGT T
Sbjct: 113 -FLANYDPEQILVTSSRQYGRFPAEKFAEAVGARARTGRFIPGTLT 157

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>RS2_SULAC (P39478) 30S ribosomal protein S2P|
          Length = 225

 Score = 69.7 bits (169), Expect = 3e-12
 Identities = 34/91 (37%), Positives = 56/91 (61%)
 Frame = +1

Query: 175 LAADVHLGTKNCDFQMERYAYKRRSDGIYIINLGKTWEKLQLAARVIVAIENPQDIIVQS 354
           L+A VH+GT  C   MER+ Y+ R +G+Y++++ K  E+L++AA+ I     P+ ++  +
Sbjct: 37  LSAGVHIGTHTCTRYMERFIYRVRPEGLYVLDVRKIDERLRVAAKFISRF-RPEAVLTVA 95

Query: 355 ARPYGQRAVLKFAQHTGANAIAGRHTPGTFT 447
           +RPY    V KF++      I+GR  PGT T
Sbjct: 96  SRPYAFTPVQKFSEVVRGKEISGRFPPGTLT 126

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>RS2_METMA (Q8PW41) 30S ribosomal protein S2P|
          Length = 224

 Score = 69.3 bits (168), Expect = 5e-12
 Identities = 38/112 (33%), Positives = 68/112 (60%)
 Frame = +1

Query: 112 AAAAGEAPRALSQKEQDVQMMLAADVHLGTKNCDFQMERYAYKRRSDGIYIINLGKTWEK 291
           AA+A E   +L   ++     LAA VH+GT+     M R+ Y+ R+DG+Y++++  T E+
Sbjct: 26  AASAKEGSTSLVSIDE----YLAAGVHIGTQQKTQDMMRFVYRVRTDGLYVLDIQSTDER 81

Query: 292 LQLAARVIVAIENPQDIIVQSARPYGQRAVLKFAQHTGANAIAGRHTPGTFT 447
           +++A++ +++  +P  I+V S+R YGQ     F++  G  A+ GR  PG+ T
Sbjct: 82  IRVASK-LLSHYDPSRILVVSSRQYGQHPARMFSRALGTRAMLGRFIPGSLT 132

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>RS2_HALMA (P29202) 30S ribosomal protein S2P (HS2) (ORFMSG)|
          Length = 267

 Score = 68.9 bits (167), Expect = 6e-12
 Identities = 36/95 (37%), Positives = 57/95 (60%)
 Frame = +1

Query: 163 VQMMLAADVHLGTKNCDFQMERYAYKRRSDGIYIINLGKTWEKLQLAARVIVAIENPQDI 342
           V+  L A VH+GT+     MER+ ++ R+DG+Y++++  T E+++ AA  +   E P+ I
Sbjct: 82  VEDYLGAGVHIGTQQKTQDMERFIHRVRTDGLYVLDVSMTDERIRTAADFLSNYE-PEQI 140

Query: 343 IVQSARPYGQRAVLKFAQHTGANAIAGRHTPGTFT 447
           +  S+R YG+    KFA+  GA    GR  PGT T
Sbjct: 141 LAASSRQYGRFPAEKFAEAIGARVRTGRFIPGTLT 175

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>RS2_METAC (Q8TT39) 30S ribosomal protein S2P|
          Length = 225

 Score = 68.2 bits (165), Expect = 1e-11
 Identities = 33/91 (36%), Positives = 59/91 (64%)
 Frame = +1

Query: 175 LAADVHLGTKNCDFQMERYAYKRRSDGIYIINLGKTWEKLQLAARVIVAIENPQDIIVQS 354
           LAA VH+GT+     M R+ Y+ R+DG+Y++++  T E++++A++ +++  +P  I+V S
Sbjct: 44  LAAGVHIGTQQKTQDMMRFVYRVRTDGLYVLDIQSTDERIRVASK-LLSHYDPARILVVS 102

Query: 355 ARPYGQRAVLKFAQHTGANAIAGRHTPGTFT 447
           +R YGQ     F++  G  A+ GR  PG+ T
Sbjct: 103 SRQYGQHPARMFSRALGTRAMLGRFIPGSLT 133

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>RS2_ARCFU (O29132) 30S ribosomal protein S2P|
          Length = 197

 Score = 66.6 bits (161), Expect = 3e-11
 Identities = 33/91 (36%), Positives = 58/91 (63%)
 Frame = +1

Query: 175 LAADVHLGTKNCDFQMERYAYKRRSDGIYIINLGKTWEKLQLAARVIVAIENPQDIIVQS 354
           LAA VH+GT+     M+++ +K R DG+Y++++ K  E++++AA+ +   E P  I++ +
Sbjct: 16  LAAGVHIGTQIKTGDMKKFIFKVRQDGLYVLDIRKLDERIRVAAKFLSRYE-PSKILLVA 74

Query: 355 ARPYGQRAVLKFAQHTGANAIAGRHTPGTFT 447
           AR Y  + V  F++  G++ I GR  PGT T
Sbjct: 75  ARQYAHKPVQMFSKVVGSDYIVGRFIPGTLT 105

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>RS2_PICTO (Q6L1Q0) 30S ribosomal protein S2P|
          Length = 200

 Score = 63.9 bits (154), Expect = 2e-10
 Identities = 33/92 (35%), Positives = 54/92 (58%)
 Frame = +1

Query: 187 VHLGTKNCDFQMERYAYKRRSDGIYIINLGKTWEKLQLAARVIVAIENPQDIIVQSARPY 366
           +H+GT+     M+ Y +K R+DG+YI+++ KT   L +A +++ A   P+ I+  + R Y
Sbjct: 18  IHIGTQIKSKDMDPYIFKIRNDGLYILDIRKTNHALIIAGKML-ARYRPEQILAVAQRQY 76

Query: 367 GQRAVLKFAQHTGANAIAGRHTPGTFTTRCRP 462
             R V KF++  G+ +I GR  PGT T    P
Sbjct: 77  AFRPVSKFSEVVGSKSIIGRFIPGTLTNPALP 108

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>RS2_PYRAE (Q8ZYE2) 30S ribosomal protein S2P|
          Length = 208

 Score = 59.3 bits (142), Expect = 5e-09
 Identities = 34/97 (35%), Positives = 56/97 (57%), Gaps = 2/97 (2%)
 Frame = +1

Query: 163 VQMMLAADVHLGTKNCDFQMER--YAYKRRSDGIYIINLGKTWEKLQLAARVIVAIENPQ 336
           ++  L+A V LGT+  +  +E   + +  R DG+ I ++ K  E+L++AA+ I A   P+
Sbjct: 13  LEKYLSAGVRLGTRLSNKYLEDRGFIFAVRPDGLRIFDIKKIDERLKIAAKFI-ARYRPE 71

Query: 337 DIIVQSARPYGQRAVLKFAQHTGANAIAGRHTPGTFT 447
            ++V + RPYG + V  F +  G  A+ GR  PGT T
Sbjct: 72  RVLVHTTRPYGFKPVQMFCKFVGCKALTGRFIPGTLT 108

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>RSSA_STRPU (P46771) 40S ribosomal protein SA (p40) (34/67 kDa laminin-binding|
           protein) (Fragment)
          Length = 264

 Score = 58.2 bits (139), Expect = 1e-08
 Identities = 25/34 (73%), Positives = 29/34 (85%)
 Frame = +1

Query: 352 SARPYGQRAVLKFAQHTGANAIAGRHTPGTFTTR 453
           S+RPYGQRAVLKF  HTGA  +AGR+TPGTFT +
Sbjct: 1   SSRPYGQRAVLKFGAHTGATPVAGRYTPGTFTNQ 34

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>RS2_AERPE (Q9YB45) 30S ribosomal protein S2P|
          Length = 205

 Score = 57.4 bits (137), Expect = 2e-08
 Identities = 33/89 (37%), Positives = 48/89 (53%)
 Frame = +1

Query: 181 ADVHLGTKNCDFQMERYAYKRRSDGIYIINLGKTWEKLQLAARVIVAIENPQDIIVQSAR 360
           A V  GT+ C   M ++ ++   +G Y ++  K  E+L +AA+ +   E P+ I V S R
Sbjct: 18  AGVIYGTQICTRYMRQFVHRILPEGYYQLDYLKIDERLAMAAKFLSTFE-PEKIAVVSVR 76

Query: 361 PYGQRAVLKFAQHTGANAIAGRHTPGTFT 447
            YGQ+ V    +  G  AI GR  PGTFT
Sbjct: 77  IYGQKPVRMMCERVGCKAITGRIIPGTFT 105

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>RT04_YEAST (P32902) Mitochondrial 40S ribosomal protein MRP4|
          Length = 394

 Score = 40.0 bits (92), Expect = 0.003
 Identities = 29/97 (29%), Positives = 49/97 (50%), Gaps = 2/97 (2%)
 Frame = +1

Query: 163 VQMMLAADVHLGTKNCDFQMERYAY-KRRSDGIYIINLGKTWEKLQLAARVIVAIENPQD 339
           V+ +++A VHLG     ++    +Y      GI+II+L +T   L+ AA+V+  +     
Sbjct: 185 VESLMSAGVHLGQSTSLWRSSTQSYIYGEYKGIHIIDLNQTLSYLKRAAKVVEGVSESGG 244

Query: 340 IIVQSARPYGQ-RAVLKFAQHTGANAIAGRHTPGTFT 447
           II+      GQ R + + A+ T    ++ R  PGT T
Sbjct: 245 IILFLGTRQGQKRGLEEAAKKTHGYYVSTRWIPGTLT 281

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>RS2_THETN (Q8RA21) 30S ribosomal protein S2|
          Length = 235

 Score = 35.8 bits (81), Expect = 0.056
 Identities = 28/98 (28%), Positives = 49/98 (50%), Gaps = 3/98 (3%)
 Frame = +1

Query: 163 VQMMLAADVHLG--TKNCDFQMERYAYKRRSDGIYIINLGKTWEKLQLAARVI-VAIENP 333
           ++ +L A VH G  T+  + +M  Y +  R+ GIYII+L +T EKL+ A   +   + + 
Sbjct: 6   MKQLLEAGVHFGHQTRRWNPKMAPYIFTERN-GIYIIDLQQTVEKLEQAYEFVKKLVMDG 64

Query: 334 QDIIVQSARPYGQRAVLKFAQHTGANAIAGRHTPGTFT 447
             I+    +   Q ++ + A+  G   +  R   GT T
Sbjct: 65  GTILFVGTKKQAQESIKEEAERCGMFYVNQRWLGGTLT 102

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>RS2_CHLPN (Q9Z7K9) 30S ribosomal protein S2|
          Length = 277

 Score = 33.5 bits (75), Expect = 0.28
 Identities = 24/98 (24%), Positives = 51/98 (52%), Gaps = 3/98 (3%)
 Frame = +1

Query: 163 VQMMLAADVHLG--TKNCDFQMERYAYKRRSDGIYIINLGKTWEKLQLA-ARVIVAIENP 333
           ++ +++A  H G  T+  + +M+ Y ++ ++ G+YIINL KT ++L+ A   +   I++ 
Sbjct: 10  IKDLMSAGAHFGHQTRRWNPKMKLYIFEEKN-GLYIINLAKTLQQLRNALPHIRKVIQDN 68

Query: 334 QDIIVQSARPYGQRAVLKFAQHTGANAIAGRHTPGTFT 447
           + ++    +   +  + + A   G   IA R   G  T
Sbjct: 69  KTVLFVGTKKQAKCVIREAAIEAGEFFIAERWLGGMLT 106

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>CAC1A_RABIT (P27884) Voltage-dependent P/Q-type calcium channel alpha-1A subunit|
            (Voltage-gated calcium channel alpha subunit Cav2.1)
            (Calcium channel, L type, alpha-1 polypeptide isoform 4)
            (Brain calcium channel I) (BI)
          Length = 2424

 Score = 32.7 bits (73), Expect = 0.47
 Identities = 14/36 (38%), Positives = 15/36 (41%)
 Frame = +3

Query: 255  HLHHQPGQDMGEAPARCEGHRRHREPAGHHRPVRPP 362
            H HH PG+  G         RR R P    RP R P
Sbjct: 2223 HHHHHPGRGPGRVSPGVSARRRRRGPVARVRPARAP 2258

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>FOXC2_HUMAN (Q99958) Forkhead box protein C2 (Forkhead-related protein FKHL14)|
           (Mesenchyme fork head protein 1) (MFH-1 protein)
           (Transcription factor FKH-14)
          Length = 501

 Score = 32.7 bits (73), Expect = 0.47
 Identities = 18/54 (33%), Positives = 21/54 (38%)
 Frame = +3

Query: 288 EAPARCEGHRRHREPAGHHRPVRPPLRPACRPQVXXXXXXXXXXXXXXPWYLHH 449
           E      GH  H +  GHH P  PP  PA +PQ                WYL+H
Sbjct: 379 EGALAATGH--HHQHHGHHHPQAPPPPPAPQPQPTPQPGAAAAQAAS--WYLNH 428

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>RS2_CHLCV (Q824U3) 30S ribosomal protein S2|
          Length = 276

 Score = 32.3 bits (72), Expect = 0.62
 Identities = 26/98 (26%), Positives = 48/98 (48%), Gaps = 3/98 (3%)
 Frame = +1

Query: 163 VQMMLAADVHLG--TKNCDFQMERYAYKRRSDGIYIINLGKTWEKLQLA-ARVIVAIENP 333
           V+ ++ A  H G  T+  + +M+ Y ++ ++ G+YIINL KT  +L+ A   V   I+  
Sbjct: 11  VKDLMEAGAHFGHQTRRWNPKMKLYIFEEKN-GLYIINLAKTLYQLRNALPHVCKVIKEN 69

Query: 334 QDIIVQSARPYGQRAVLKFAQHTGANAIAGRHTPGTFT 447
           + I+    +   +  + + A   G   +A R   G  T
Sbjct: 70  KPILFVGTKKQAKCVIKEAAIEAGEYFVAERWLGGMLT 107

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>TMC2_HUMAN (Q8TDI7) Transmembrane cochlear-expressed protein 2|
          Length = 906

 Score = 32.3 bits (72), Expect = 0.62
 Identities = 18/51 (35%), Positives = 20/51 (39%)
 Frame = +3

Query: 216 PDGALRLQAPLRRHLHHQPGQDMGEAPARCEGHRRHREPAGHHRPVRPPLR 368
           P    R Q   RRH      Q+ GEA   CEG R+  E A        P R
Sbjct: 66  PGSPRRKQTGRRRHREELGEQERGEAERTCEGRRKRDERASFQERTAAPKR 116

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>ZNF74_HUMAN (Q16587) Zinc finger protein 74 (hZNF7)|
          Length = 643

 Score = 25.8 bits (55), Expect(2) = 1.9
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +2

Query: 101 DQPWRQRPEKPRGRCP 148
           ++PW  + E PRG CP
Sbjct: 99  EEPWSMQREVPRGPCP 114



 Score = 23.5 bits (49), Expect(2) = 1.9
 Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
 Frame = +3

Query: 222 GAL-RLQAPLRRHLHHQPGQDMGEAPARCEGHRRHREPAG 338
           GAL R QA   R   H  G+ + E P RC    + R P G
Sbjct: 154 GALQRSQAAPGRRTCHGLGRPVEEFPLRCPLFAQQRVPEG 193

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>RT02_ARATH (Q9GCB9) Mitochondrial ribosomal protein S2|
          Length = 219

 Score = 29.6 bits (65), Expect = 4.0
 Identities = 17/51 (33%), Positives = 28/51 (54%)
 Frame = +1

Query: 163 VQMMLAADVHLGTKNCDFQMERYAYKRRSDGIYIINLGKTWEKLQLAARVI 315
           +Q +L    HLG +  +   ++YAY  R +G+ II+  KT   L+ AA  +
Sbjct: 8   IQKLLNTGAHLGRRAAEHHFKQYAYGTR-NGMTIIDSDKTLICLRSAAHFV 57

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>RS2_ONYPE (Q6YR51) 30S ribosomal protein S2|
          Length = 271

 Score = 29.6 bits (65), Expect = 4.0
 Identities = 26/97 (26%), Positives = 50/97 (51%), Gaps = 3/97 (3%)
 Frame = +1

Query: 166 QMMLAADVHLG--TKNCDFQMERYAYKRRSDGIYIINLGKTWEKLQLAARVIV-AIENPQ 336
           + +L + V+ G  T+  + +M+ Y +  R+ GI+IINL KT E+++ A + ++  I +  
Sbjct: 7   KQLLESGVYFGHATRKWNPKMKPYIFTSRN-GIHIINLKKTSEEIEKAYQELLNIITSGG 65

Query: 337 DIIVQSARPYGQRAVLKFAQHTGANAIAGRHTPGTFT 447
             +    +   Q A+ + AQ +    +  R   GT T
Sbjct: 66  KALFLGTKKQIQSAIREEAQRSQQYYVDHRWLGGTLT 102

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>LEU21_METJA (Q58409) 3-isopropylmalate dehydratase large subunit 1 (EC|
           4.2.1.33) (Isopropylmalate isomerase 1) (Alpha-IPM
           isomerase 1) (IPMI 1)
          Length = 420

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 18/71 (25%), Positives = 30/71 (42%), Gaps = 4/71 (5%)
 Frame = +1

Query: 247 SDGIYIINLGKTWEKLQLAARVIVAIEN----PQDIIVQSARPYGQRAVLKFAQHTGANA 414
           +D  YI   G+TW K+    RV +  +N     +DI+++  +  G+R     A   G   
Sbjct: 136 TDMAYIYATGETWIKVPKTIRVDIVGKNENVSAKDIVLRVCKEIGRRGATYMAIEYGGEV 195

Query: 415 IAGRHTPGTFT 447
           +      G  T
Sbjct: 196 VKNMDMDGRLT 206

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>NIFD_METBA (P55170) Nitrogenase molybdenum-iron protein alpha chain (EC|
           1.18.6.1) (Nitrogenase component I) (Dinitrogenase)
          Length = 532

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = +3

Query: 294 PARCEGHRRHREPAGHH 344
           PARCEG+R   + AGHH
Sbjct: 179 PARCEGYRGVSQSAGHH 195

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>RECU_LISIN (Q92AB7) Recombination protein U homolog|
          Length = 201

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 25/78 (32%), Positives = 31/78 (39%), Gaps = 16/78 (20%)
 Frame = +1

Query: 211 DFQMERYAYKRRSDGIYII-----NLGKT-----------WEKLQLAARVIVAIENPQDI 342
           D QM   A   + DGI  +      LG+T           WE++Q   R  V I   QD+
Sbjct: 119 DHQMTHMANVLKQDGIVFVIIAFQKLGETHFIPFEKFYPFWERMQSGGRKSVTISEIQDV 178

Query: 343 IVQSARPYGQRAVLKFAQ 396
             Q   PYG    L F Q
Sbjct: 179 SDQV--PYGLNPRLDFLQ 194

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>YGY3_HALSQ (P21561) Hypothetical 50.6 kDa protein in the 5'region of gyrA and|
           gyrB (ORF 3)
          Length = 437

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 22/61 (36%), Positives = 26/61 (42%)
 Frame = +3

Query: 198 HQELRLPDGALRLQAPLRRHLHHQPGQDMGEAPARCEGHRRHREPAGHHRPVRPPLRPAC 377
           H   R+ DGA     P R+ L  QP       P R +  RR R    H R +R   RPA 
Sbjct: 143 HASDRVQDGA----HPRRQRLREQPRH--AGRPRRRQPPRRGRSRGTHRRHLRQAPRPAV 196

Query: 378 R 380
           R
Sbjct: 197 R 197

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>OTX1_RAT (Q63410) Homeobox protein OTX1|
          Length = 355

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 13/30 (43%), Positives = 14/30 (46%)
 Frame = +3

Query: 255 HLHHQPGQDMGEAPARCEGHRRHREPAGHH 344
           H HH P Q    AP+   GH  H  P  HH
Sbjct: 256 HSHHHPHQLSPMAPSSMAGH-HHHHPHAHH 284

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>OTX1_MOUSE (P80205) Homeobox protein OTX1|
          Length = 355

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 13/30 (43%), Positives = 14/30 (46%)
 Frame = +3

Query: 255 HLHHQPGQDMGEAPARCEGHRRHREPAGHH 344
           H HH P Q    AP+   GH  H  P  HH
Sbjct: 256 HSHHHPHQLSPMAPSSMAGH-HHHHPHAHH 284

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>RECU_LISMO (Q8Y611) Recombination protein U homolog|
          Length = 201

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 25/78 (32%), Positives = 31/78 (39%), Gaps = 16/78 (20%)
 Frame = +1

Query: 211 DFQMERYAYKRRSDGIYII-----NLGKT-----------WEKLQLAARVIVAIENPQDI 342
           D QM   A   + DGI  +      LG+T           WE++Q   R  V I   QD+
Sbjct: 119 DHQMTHMANVLKQDGIVFVIIAFQKLGETHFIPFEKFYPFWERMQSGGRKSVTIAEIQDV 178

Query: 343 IVQSARPYGQRAVLKFAQ 396
             Q   PYG    L F Q
Sbjct: 179 SDQI--PYGLNPRLDFLQ 194

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>RECU_LISMF (Q71YC4) Recombination protein U homolog|
          Length = 201

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 25/78 (32%), Positives = 31/78 (39%), Gaps = 16/78 (20%)
 Frame = +1

Query: 211 DFQMERYAYKRRSDGIYII-----NLGKT-----------WEKLQLAARVIVAIENPQDI 342
           D QM   A   + DGI  +      LG+T           WE++Q   R  V I   QD+
Sbjct: 119 DHQMTHMANVLKQDGIVFVIIAFQKLGETHFIPFEKFYPFWERMQSGGRKSVTIAEIQDV 178

Query: 343 IVQSARPYGQRAVLKFAQ 396
             Q   PYG    L F Q
Sbjct: 179 SDQI--PYGLNPRLDFLQ 194

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>JPH3_HUMAN (Q8WXH2) Junctophilin-3 (Junctophilin type 3) (JP-3)|
          Length = 748

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +1

Query: 346 VQSARPYGQRAVLKFAQHTGANAIAGRHTPGT 441
           V+ + PYG  AV++    T  N++   HT GT
Sbjct: 144 VRQSVPYGMAAVIRSPLRTSINSLRSEHTNGT 175

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>OTX1_HUMAN (P32242) Homeobox protein OTX1|
          Length = 354

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 13/30 (43%), Positives = 14/30 (46%)
 Frame = +3

Query: 255 HLHHQPGQDMGEAPARCEGHRRHREPAGHH 344
           H HH P Q    AP+   GH  H  P  HH
Sbjct: 256 HSHHHPHQLSPMAPSSMAGH-HHHHPHAHH 284

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>RS1_HELPY (P56008) 30S ribosomal protein S1|
          Length = 556

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 17/69 (24%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
 Frame = +1

Query: 235 YKRRSDGIYIINLGKTWEKLQLAARVIVAIENPQDIIVQSARP-YGQRAVLKFAQHTGAN 411
           Y +  D +Y+  +    EK +L+  +   IE+P + I    +P Y  + V+   +H G  
Sbjct: 246 YYKEGDEVYVKAIAYDAEKRRLSLSIKATIEDPWEEIQDKLKPGYAIKVVVSNIEHYGVF 305

Query: 412 AIAGRHTPG 438
              G    G
Sbjct: 306 VDIGNDIEG 314

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>YR229_MIMIV (Q5UQC4) Putative ankyrin repeat protein R229|
          Length = 307

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +1

Query: 337 DIIVQSARPYGQRAVLKFAQHTGANAIAGRHTP 435
           D  +Q A  YG   +++F    GAN +A R+ P
Sbjct: 227 DYAIQMACKYGYNEIVRFLVFNGANPMANRYYP 259

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>RS1_HELPJ (Q9ZKF6) 30S ribosomal protein S1|
          Length = 552

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 17/69 (24%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
 Frame = +1

Query: 235 YKRRSDGIYIINLGKTWEKLQLAARVIVAIENPQDIIVQSARP-YGQRAVLKFAQHTGAN 411
           Y +  D +Y+  +    EK +L+  +   IE+P + I    +P Y  + V+   +H G  
Sbjct: 242 YYKEGDEVYVKAIAYDEEKRRLSLSIKATIEDPWEEIQDKLKPGYAIKVVVSNIEHYGVF 301

Query: 412 AIAGRHTPG 438
              G    G
Sbjct: 302 VDIGNDIEG 310

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>NOP3_YEAST (Q01560) Nucleolar protein 3 (Mitochondrial targeting suppressor 1|
           protein) (Nuclear polyadenylated RNA-binding protein 1)
          Length = 414

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 12/31 (38%), Positives = 13/31 (41%)
 Frame = +3

Query: 255 HLHHQPGQDMGEAPARCEGHRRHREPAGHHR 347
           H HHQP +     P    G   H  P  HHR
Sbjct: 87  HQHHQPPEPQPYYPPPPPGEHMHGRPPMHHR 117

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>IF2_RHOPA (Q6NCN5) Translation initiation factor IF-2|
          Length = 883

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 15/39 (38%), Positives = 18/39 (46%)
 Frame = +3

Query: 267 QPGQDMGEAPARCEGHRRHREPAGHHRPVRPPLRPACRP 383
           +P     EA    E  R  R P G  RP  PP +PA +P
Sbjct: 211 RPPAVAAEAGDDDEAPRMIRRPGGPARPAPPPKQPAAKP 249


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,199,508
Number of Sequences: 219361
Number of extensions: 762427
Number of successful extensions: 3010
Number of sequences better than 10.0: 71
Number of HSP's better than 10.0 without gapping: 2838
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2980
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 3026354448
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result