ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baet102d03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_493895.1| Oryza sativa (japonica cultivar-group), predic... 44 0.41
2dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.41
3dbj|AK067943.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.41
4dbj|AP001111.1| Oryza sativa genomic DNA, chromosome 5, clone:P0... 44 0.41
5ref|NM_120061.1| Arabidopsis thaliana hydrolase, hydrolyzing O-g... 42 1.6
6gb|DQ490515.1| Emericella nidulans alpha-galactosidase (AN8138-2... 42 1.6
7ref|XM_676315.1| Aspergillus nidulans FGSC A4 alpha-galactosidas... 42 1.6
8emb|CT009641.2| Pan troglodytes chromosome X BAC PTB-007I17, com... 42 1.6
9emb|Z93848.1|HSU35G3 Human DNA sequence from clone LL0XNC01-35G3... 42 1.6
10emb|AL161594.2|ATCHRIV90 Arabidopsis thaliana DNA chromosome 4, ... 42 1.6
11emb|AL035679.1|ATF19H22 Arabidopsis thaliana DNA chromosome 4, B... 42 1.6
12gb|AY059825.1| Arabidopsis thaliana putative endo-1, 4-beta-gluc... 42 1.6
13emb|BX826717.1|CNS0A45J Arabidopsis thaliana Full-length cDNA Co... 42 1.6
14gb|U47026.1|ALU47026 Alcaligenes latus poly(3-hydroxyalkanoate) ... 42 1.6
15emb|AL732498.15| Mouse DNA sequence from clone RP23-323E6 on chr... 42 1.6
16ref|XM_420183.1| PREDICTED: Gallus gallus similar to Alpha-galac... 40 6.4
17ref|XM_799551.1| Trypanosoma cruzi strain CL Brener hypothetical... 40 6.4
18ref|XM_808666.1| Trypanosoma cruzi strain CL Brener hypothetical... 40 6.4
19emb|AL590450.1|CNS07EGH chromosome XI of strain GB-M1 of Encepha... 40 6.4
20emb|BX323577.16| Zebrafish DNA sequence from clone CH211-277N6 i... 40 6.4
21emb|BX323037.10| Zebrafish DNA sequence from clone DKEYP-8B6 in ... 40 6.4
22gb|AF281817.1|AF281817 Tupaia herpesvirus strain 2, complete genome 40 6.4
23dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.4
24gb|AF228035.1|AF228035 Tupaia herpesvirus viral terminase (VTER)... 40 6.4
25dbj|AP004255.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.4
26dbj|AP004178.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.4
27ref|XM_317857.2| Anopheles gambiae str. PEST ENSANGP00000014192 ... 40 6.4
28ref|XM_310816.2| Anopheles gambiae str. PEST ENSANGP00000008011 ... 40 6.4
29dbj|AK070960.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.4
30emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,comp... 40 6.4
31gb|AF006190.1|AF006190 Heliothis virescens GABA-gated chloride c... 40 6.4

>ref|XM_493895.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 513

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 310 tcaccatggccaccacggcggc 331
           ||||||||||||||||||||||
Sbjct: 366 tcaccatggccaccacggcggc 387



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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5,
              complete sequence
          Length = 29737217

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 310    tcaccatggccaccacggcggc 331
              ||||||||||||||||||||||
Sbjct: 937575 tcaccatggccaccacggcggc 937554



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>dbj|AK067943.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013122C02, full
           insert sequence
          Length = 865

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 310 tcaccatggccaccacggcggc 331
           ||||||||||||||||||||||
Sbjct: 431 tcaccatggccaccacggcggc 452



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>dbj|AP001111.1| Oryza sativa genomic DNA, chromosome 5, clone:P0699E04
          Length = 175439

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 310   tcaccatggccaccacggcggc 331
             ||||||||||||||||||||||
Sbjct: 27972 tcaccatggccaccacggcggc 27951



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>ref|NM_120061.1| Arabidopsis thaliana hydrolase, hydrolyzing O-glycosyl compounds
           AT4G39010 mRNA, complete cds
          Length = 1835

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                            
Query: 309 ctcaccatggccaccacggcggccgtcaacgac 341
           ||||||||  |||||||||||||||||| ||||
Sbjct: 38  ctcaccatcaccaccacggcggccgtcaccgac 70



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>gb|DQ490515.1| Emericella nidulans alpha-galactosidase (AN8138-2) mRNA, complete cds
          Length = 2253

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 331  ccgtcaacgacacctccgccgagaa 355
            ||||||||||||||||||| |||||
Sbjct: 1289 ccgtcaacgacacctccgctgagaa 1313



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>ref|XM_676315.1| Aspergillus nidulans FGSC A4 alpha-galactosidase C precursor
            (AN8138.2), mRNA
          Length = 2253

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 331  ccgtcaacgacacctccgccgagaa 355
            ||||||||||||||||||| |||||
Sbjct: 1289 ccgtcaacgacacctccgctgagaa 1313



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>emb|CT009641.2| Pan troglodytes chromosome X BAC PTB-007I17, complete sequence
          Length = 68055

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 299   caccaccgtgctcaccatggccacc 323
             ||||||||||||||||||| |||||
Sbjct: 15362 caccaccgtgctcaccatgaccacc 15338



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>emb|Z93848.1|HSU35G3 Human DNA sequence from clone LL0XNC01-35G3 on chromosome X
           Contains the 5' end of a gene for the possible ortholog
           of mouse glycine receptor alpha 4 subunit (GLRA4),
           complete sequence
          Length = 39796

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 299 caccaccgtgctcaccatggccacc 323
           ||||||||||||||||||| |||||
Sbjct: 857 caccaccgtgctcaccatgaccacc 833



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>emb|AL161594.2|ATCHRIV90 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 90
          Length = 198987

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                              
Query: 309   ctcaccatggccaccacggcggccgtcaacgac 341
             ||||||||  |||||||||||||||||| ||||
Sbjct: 93301 ctcaccatcaccaccacggcggccgtcaccgac 93269



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>emb|AL035679.1|ATF19H22 Arabidopsis thaliana DNA chromosome 4, BAC clone F19H22 (ESSA project)
          Length = 100469

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                              
Query: 309   ctcaccatggccaccacggcggccgtcaacgac 341
             ||||||||  |||||||||||||||||| ||||
Sbjct: 55291 ctcaccatcaccaccacggcggccgtcaccgac 55259



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>gb|AY059825.1| Arabidopsis thaliana putative endo-1, 4-beta-glucanase (At4g39010;
           F19H22.110) mRNA, complete cds
          Length = 1836

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                            
Query: 309 ctcaccatggccaccacggcggccgtcaacgac 341
           ||||||||  |||||||||||||||||| ||||
Sbjct: 38  ctcaccatcaccaccacggcggccgtcaccgac 70



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>emb|BX826717.1|CNS0A45J Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB57ZE01 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 1760

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                            
Query: 309 ctcaccatggccaccacggcggccgtcaacgac 341
           ||||||||  |||||||||||||||||| ||||
Sbjct: 16  ctcaccatcaccaccacggcggccgtcaccgac 48



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>gb|U47026.1|ALU47026 Alcaligenes latus poly(3-hydroxyalkanoate) synthesis (phaC, phaA, and
            phaB) genes, complete cds
          Length = 4674

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 189  gcggccgacacgaccatcacggcgg 213
            |||||||||| ||||||||||||||
Sbjct: 3072 gcggccgacatgaccatcacggcgg 3048



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>emb|AL732498.15| Mouse DNA sequence from clone RP23-323E6 on chromosome 4, complete
              sequence
          Length = 145881

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 352    agaacaccaagaggctcaggc 372
              |||||||||||||||||||||
Sbjct: 100956 agaacaccaagaggctcaggc 100936



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>ref|XM_420183.1| PREDICTED: Gallus gallus similar to Alpha-galactosidase A precursor
            (Melibiase) (Alpha-D-galactoside galactohydrolase)
            (Alpha-D-galactosidase A) (Agalsidase alfa) (LOC422188),
            mRNA
          Length = 3972

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 299  caccaccgtgctcaccatggccac 322
            ||||||||||||||||||| ||||
Sbjct: 1467 caccaccgtgctcaccatgaccac 1490



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>ref|XM_799551.1| Trypanosoma cruzi strain CL Brener hypothetical protein
            (Tc00.1047053506215.19) partial mRNA
          Length = 4810

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 318  gccaccacggcggccgtcaa 337
            ||||||||||||||||||||
Sbjct: 1171 gccaccacggcggccgtcaa 1190



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>ref|XM_808666.1| Trypanosoma cruzi strain CL Brener hypothetical protein
            (Tc00.1047053511285.4) partial mRNA
          Length = 1905

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 318  gccaccacggcggccgtcaa 337
            ||||||||||||||||||||
Sbjct: 1171 gccaccacggcggccgtcaa 1190



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>emb|AL590450.1|CNS07EGH chromosome XI of strain GB-M1 of Encephalitozoon cuniculi (Microspora)
          Length = 267509

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 376   tgtacgaggaggaggagatgagca 399
             ||||||||||||||||||| ||||
Sbjct: 89373 tgtacgaggaggaggagataagca 89350



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>emb|BX323577.16| Zebrafish DNA sequence from clone CH211-277N6 in linkage group 24,
           complete sequence
          Length = 55628

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 253 agatccacagcatcagctac 272
           ||||||||||||||||||||
Sbjct: 965 agatccacagcatcagctac 946



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>emb|BX323037.10| Zebrafish DNA sequence from clone DKEYP-8B6 in linkage group 24, complete
              sequence
          Length = 173818

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 253    agatccacagcatcagctac 272
              ||||||||||||||||||||
Sbjct: 172775 agatccacagcatcagctac 172756



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>gb|AF281817.1|AF281817 Tupaia herpesvirus strain 2, complete genome
          Length = 195859

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 160    cggggtcgggcttcaccagctgcc 183
              |||||||| |||||||||||||||
Sbjct: 148327 cggggtcgagcttcaccagctgcc 148304



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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 381      gaggaggaggagatgagcac 400
                ||||||||||||||||||||
Sbjct: 27981009 gaggaggaggagatgagcac 27980990



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>gb|AF228035.1|AF228035 Tupaia herpesvirus viral terminase (VTER), T94 protein (T94), T93
            protein (T93), T92 protein (T92), T90 protein (T90), and
            T91 protein (T91) genes, complete cds
          Length = 7221

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 160  cggggtcgggcttcaccagctgcc 183
            |||||||| |||||||||||||||
Sbjct: 1623 cggggtcgagcttcaccagctgcc 1646



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>dbj|AP004255.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1212_A08
          Length = 119304

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 381   gaggaggaggagatgagcac 400
             ||||||||||||||||||||
Sbjct: 24671 gaggaggaggagatgagcac 24652



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>dbj|AP004178.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1123_G04
          Length = 124666

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 381    gaggaggaggagatgagcac 400
              ||||||||||||||||||||
Sbjct: 108461 gaggaggaggagatgagcac 108442



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>ref|XM_317857.2| Anopheles gambiae str. PEST ENSANGP00000014192
           (ENSANGG00000011703), partial mRNA
          Length = 1299

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 379 acgaggaggaggagatgagc 398
           ||||||||||||||||||||
Sbjct: 845 acgaggaggaggagatgagc 864



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>ref|XM_310816.2| Anopheles gambiae str. PEST ENSANGP00000008011 (ENSANGG00000006038),
            partial mRNA
          Length = 3390

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 262  gcatcagctacaggctcgacgagg 285
            |||||||||||| |||||||||||
Sbjct: 1829 gcatcagctacacgctcgacgagg 1852



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>dbj|AK070960.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023068B22, full
           insert sequence
          Length = 1485

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 381 gaggaggaggagatgagcac 400
           ||||||||||||||||||||
Sbjct: 235 gaggaggaggagatgagcac 216



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>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence
          Length = 5888780

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 418     agctcaagctcggctacaattcca 441
               ||||||||||||||| ||||||||
Sbjct: 4568064 agctcaagctcggcttcaattcca 4568087



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>gb|AF006190.1|AF006190 Heliothis virescens GABA-gated chloride channel isoform a1 mRNA,
           partial cds
          Length = 669

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 299 caccaccgtgctcaccatggccac 322
           ||||||||||||||||||| ||||
Sbjct: 475 caccaccgtgctcaccatgaccac 498


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,665,602
Number of Sequences: 3902068
Number of extensions: 3665602
Number of successful extensions: 70328
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 70126
Number of HSP's gapped (non-prelim): 202
length of query: 472
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 450
effective length of database: 17,147,199,772
effective search space: 7716239897400
effective search space used: 7716239897400
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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