No.
Definition
Score (bits)
E Value
1 gb|AC120991.3| Oryza sativa (japonica cultivar-group) chromosome...
242
8e-61
2 dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D...
242
8e-61
3 dbj|AK070554.1| Oryza sativa (japonica cultivar-group) cDNA clon...
220
3e-54
4 dbj|AK122177.1| Oryza sativa (japonica cultivar-group) cDNA clon...
147
4e-32
5 dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D...
62
2e-06
6 dbj|AP005886.3| Oryza sativa (japonica cultivar-group) genomic D...
62
2e-06
7 dbj|AP005568.3| Oryza sativa (japonica cultivar-group) genomic D...
62
2e-06
8 ref|XM_512475.1| PREDICTED: Pan troglodytes similar to myosin IX...
44
0.39
9 ref|NM_004145.2| Homo sapiens myosin IXB (MYO9B), mRNA
44
0.39
10 gb|AC020908.7| Homo sapiens chromosome 19 clone CTD-2528A14, com...
44
0.39
11 gb|AC092476.1|AC092476 Homo sapiens chromosome 19 clone LLNLR-23...
44
0.39
12 dbj|AB209997.1| Homo sapiens mRNA for MYO9B variant protein, par...
44
0.39
13 gb|U42391.1|HSU42391 Human myosin-IXb mRNA, complete cds
44
0.39
14 gb|CP000240.1| Synechococcus sp. JA-2-3B'a(2-13), complete genome
42
1.5
15 dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome
42
1.5
16 gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome
40
6.1
17 ref|XM_844545.1| PREDICTED: Canis familiaris similar to growth f...
40
6.1
18 emb|CT009536.7| Mouse DNA sequence from clone RP23-25A7 on chrom...
40
6.1
19 gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
40
6.1
20 gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete...
40
6.1
21 gb|AC167562.5| Culex pipiens quinquefasciatus, clone Culex pipie...
40
6.1
22 gb|U18777.1|MAU18777 Mycobacterium avium plasmid pLR7 Rep gene, ...
40
6.1
>gb|AC120991.3 | Oryza sativa (japonica cultivar-group) chromosome 5 clone
OSJNBb0006J12, complete sequence
Length = 157069
Score = 242 bits (122), Expect = 8e-61
Identities = 278/330 (84%)
Strand = Plus / Plus
Query: 115 cgccgtggtgctgccggtgaggaaggacagcgcaacggggcagtacctgacgggcttccg 174
||||||| ||||||||||||| |||||| ||| ||| ||||||| ||||| |||||
Sbjct: 88573 cgccgtgctgctgccggtgagcaaggacgacgcgacgcagcagtacgtgacgatgttccg 88632
Query: 175 gcagcgaacgccccaggtcccggtgacggccgtgctcgaccttggaggcgcctcgctctg 234
|||||| ||||| |||| || ||| ||||||||| ||||| | |||||| |||| ||
Sbjct: 88633 gcagcggacgccgcaggcgcccttgaaggccgtgctggacctcgccggcgccacgctgtg 88692
Query: 235 ggtggactgcgacgccgggtacgtgtcctcgtcctacgcgggcgtgccgtgcgcgtccaa 294
|||||||||||| |||||||||||||| ||||| |||||| |||||||||||| ||||||
Sbjct: 88693 ggtggactgcgaggccgggtacgtgtcgtcgtcgtacgcgcgcgtgccgtgcgggtccaa 88752
Query: 295 gctgtgccgcctcgcgaagagtgtggcctgcgccaccagctgcgtcggcaagccgtcccc 354
|| |||||||||||| |||| || |||||||||||||||| |||| |||||| ||
Sbjct: 88753 gcagtgccgcctcgccaagaccaacgcgtgcgccaccagctgcgacggcgcgccgtcgcc 88812
Query: 355 ggggtgtctgaacgacacctgtagcgggttcccggagaacaccgtcacgcgcgtcagcac 414
|| || || ||||||||||| ||||||||||||||||||| ||||||| |||||||||
Sbjct: 88813 ggcctgcctcaacgacacctgcggcgggttcccggagaacacggtcacgcacgtcagcac 88872
Query: 415 cggcgggaacctcatcaccgacgtgctgtc 444
| |||| ||| |||||||||||||||||||
Sbjct: 88873 cagcggcaacgtcatcaccgacgtgctgtc 88902
Score = 208 bits (105), Expect = 1e-50
Identities = 282/341 (82%)
Strand = Plus / Plus
Query: 110 ccgagcgccgtggtgctgccggtgaggaaggacagcgcaacggggcagtacctgacgggc 169
||||| |||||||||||||||||||| |||||| ||| ||| ||||||| |||||
Sbjct: 91061 ccgagagccgtggtgctgccggtgagcaaggacgacgcgacgcagcagtacgcgacggtg 91120
Query: 170 ttccggcagcgaacgccccaggtcccggtgacggccgtgctcgaccttggaggcgcctcg 229
||||||||||| ||||| ||||| || |||| ||||||||| ||||| | |||||| ||
Sbjct: 91121 ttccggcagcggacgccgcaggtgcccgtgaaggccgtgctggacctcgcgggcgccacg 91180
Query: 230 ctctgggtggactgcgacgccgggtacgtgtcctcgtcctacgcgggcgtgccgtgcgcg 289
||||||||||||||||| ||||||||||||| |||||||||||| | || ||||||| |
Sbjct: 91181 ctctgggtggactgcgataccgggtacgtgtcgtcgtcctacgcgcgtgtcccgtgcggg 91240
Query: 290 tccaagctgtgccgcctcgcgaagagtgtggcctgcgccaccagctgcgtcggcaagccg 349
||||||| |||||||||| | |||| | | |||| || ||||||| ||||| |||
Sbjct: 91241 tccaagccgtgccgcctcaccaagaccggcggctgcttcaacagctgcttcggcgcgcca 91300
Query: 350 tccccggggtgtctgaacgacacctgtagcgggttcccggagaacaccgtcacgcgcgtc 409
||||||| || || |||| |||||| |||||||||||||| ||||| ||||||||||||
Sbjct: 91301 tccccggcctgcctcaacggcacctgcagcgggttcccggataacacggtcacgcgcgtc 91360
Query: 410 agcaccggcgggaacctcatcaccgacgtgctgtcggtgcc 450
| | ||||| ||| |||||||||||||||| ||| ||||
Sbjct: 91361 acggctggcggcaacatcatcaccgacgtgctctcgctgcc 91401
Score = 184 bits (93), Expect = 2e-43
Identities = 276/337 (81%)
Strand = Plus / Plus
Query: 109 cccgagcgccgtggtgctgccggtgaggaaggacagcgcaacggggcagtacctgacggg 168
||||||||||||| ||||||||||| |||||| |||||||| ||||||| |||||
Sbjct: 95445 cccgagcgccgtgctgctgccggtggacaaggacggcgcaacgcagcagtacgtgacgat 95504
Query: 169 cttccggcagcgaacgccccaggtcccggtgacggccgtgctcgaccttggaggcgcctc 228
||| ||||||| ||||| || || |||| ||||||| | ||||| | ||||||
Sbjct: 95505 gttctggcagcggacgccgagtgtgcccgtgaaggccgtggttgacctcgcgggcgccat 95564
Query: 229 gctctgggtggactgcgacgccgggtacgtgtcctcgtcctacgcgggcgtgccgtgcgc 288
|||||||||||||||||| ||||||||| ||| ||||| || ||| ||||||||||||
Sbjct: 95565 gctctgggtggactgcgagtccgggtacgagtcgtcgtcgtatgcgcgcgtgccgtgcgg 95624
Query: 289 gtccaagctgtgccgcctcgcgaagagtgtggcctgcgccaccagctgcgtcggcaagcc 348
|||||||| ||||||||||||||||| | ||||| |||||| ||||| ||| | |
Sbjct: 95625 gtccaagccttgccgcctcgcgaagagcgccgcctgtgccaccggctgctccggtgcggc 95684
Query: 349 gtccccggggtgtctgaacgacacctgtagcgggttcccggagaacaccgtcacgcgcgt 408
||||||||| || || ||||||||||| | ||||||||||||| |||| ||||||||||
Sbjct: 95685 gtccccgggctgcctcaacgacacctgcaccgggttcccggagtacactatcacgcgcgt 95744
Query: 409 cagcaccggcgggaacctcatcaccgacgtgctgtcg 445
|||||||||||| ||| ||||||| ||| |||||||
Sbjct: 95745 cagcaccggcggcaacatcatcacagacaagctgtcg 95781
Score = 147 bits (74), Expect = 4e-32
Identities = 152/178 (85%)
Strand = Plus / Plus
Query: 110 ccgagcgccgtggtgctgccggtgaggaaggacagcgcaacggggcagtacctgacgggc 169
|||||| ||||||||||||||||||| |||||| ||| ||| ||||||| |||||
Sbjct: 102448 ccgagctccgtggtgctgccggtgagcaaggacgacgcgacgcagcagtacgtgacgatg 102507
Query: 170 ttccggcagcgaacgccccaggtcccggtgacggccgtgctcgaccttggaggcgcctcg 229
||||||||||| ||||| ||||| || |||| ||||||||| ||||| | ||| || |
Sbjct: 102508 ttccggcagcggacgccgcaggtgcccgtgaaggccgtgctggacctcgcgggcaccatg 102567
Query: 230 ctctgggtggactgcgacgccgggtacgtgtcctcgtcctacgcgggcgtgccgtgcg 287
|||||||||||||||||||||||||||||||||||||| ||||| ||||||| |||||
Sbjct: 102568 ctctgggtggactgcgacgccgggtacgtgtcctcgtcgtacgccggcgtgcggtgcg 102625
Score = 99.6 bits (50), Expect = 8e-18
Identities = 77/86 (89%)
Strand = Plus / Plus
Query: 365 aacgacacctgtagcgggttcccggagaacaccgtcacgcgcgtcagcaccggcgggaac 424
||||||||||| |||| ||||||| ||||||||| |||| |||||||||||| ||| |||
Sbjct: 102703 aacgacacctgcagcgagttcccgaagaacaccgccacgagcgtcagcaccgccggcaac 102762
Query: 425 ctcatcaccgacgtgctgtcggtgcc 450
|||||||||||||||||||| ||||
Sbjct: 102763 atcatcaccgacgtgctgtcgctgcc 102788
>dbj|AP008211.1 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
sequence
Length = 29737217
Score = 242 bits (122), Expect = 8e-61
Identities = 278/330 (84%)
Strand = Plus / Plus
Query: 115 cgccgtggtgctgccggtgaggaaggacagcgcaacggggcagtacctgacgggcttccg 174
||||||| ||||||||||||| |||||| ||| ||| ||||||| ||||| |||||
Sbjct: 19487861 cgccgtgctgctgccggtgagcaaggacgacgcgacgcagcagtacgtgacgatgttccg 19487920
Query: 175 gcagcgaacgccccaggtcccggtgacggccgtgctcgaccttggaggcgcctcgctctg 234
|||||| ||||| |||| || ||| ||||||||| ||||| | |||||| |||| ||
Sbjct: 19487921 gcagcggacgccgcaggcgcccttgaaggccgtgctggacctcgccggcgccacgctgtg 19487980
Query: 235 ggtggactgcgacgccgggtacgtgtcctcgtcctacgcgggcgtgccgtgcgcgtccaa 294
|||||||||||| |||||||||||||| ||||| |||||| |||||||||||| ||||||
Sbjct: 19487981 ggtggactgcgaggccgggtacgtgtcgtcgtcgtacgcgcgcgtgccgtgcgggtccaa 19488040
Query: 295 gctgtgccgcctcgcgaagagtgtggcctgcgccaccagctgcgtcggcaagccgtcccc 354
|| |||||||||||| |||| || |||||||||||||||| |||| |||||| ||
Sbjct: 19488041 gcagtgccgcctcgccaagaccaacgcgtgcgccaccagctgcgacggcgcgccgtcgcc 19488100
Query: 355 ggggtgtctgaacgacacctgtagcgggttcccggagaacaccgtcacgcgcgtcagcac 414
|| || || ||||||||||| ||||||||||||||||||| ||||||| |||||||||
Sbjct: 19488101 ggcctgcctcaacgacacctgcggcgggttcccggagaacacggtcacgcacgtcagcac 19488160
Query: 415 cggcgggaacctcatcaccgacgtgctgtc 444
| |||| ||| |||||||||||||||||||
Sbjct: 19488161 cagcggcaacgtcatcaccgacgtgctgtc 19488190
Score = 208 bits (105), Expect = 1e-50
Identities = 282/341 (82%)
Strand = Plus / Plus
Query: 110 ccgagcgccgtggtgctgccggtgaggaaggacagcgcaacggggcagtacctgacgggc 169
||||| |||||||||||||||||||| |||||| ||| ||| ||||||| |||||
Sbjct: 19490349 ccgagagccgtggtgctgccggtgagcaaggacgacgcgacgcagcagtacgcgacggtg 19490408
Query: 170 ttccggcagcgaacgccccaggtcccggtgacggccgtgctcgaccttggaggcgcctcg 229
||||||||||| ||||| ||||| || |||| ||||||||| ||||| | |||||| ||
Sbjct: 19490409 ttccggcagcggacgccgcaggtgcccgtgaaggccgtgctggacctcgcgggcgccacg 19490468
Query: 230 ctctgggtggactgcgacgccgggtacgtgtcctcgtcctacgcgggcgtgccgtgcgcg 289
||||||||||||||||| ||||||||||||| |||||||||||| | || ||||||| |
Sbjct: 19490469 ctctgggtggactgcgataccgggtacgtgtcgtcgtcctacgcgcgtgtcccgtgcggg 19490528
Query: 290 tccaagctgtgccgcctcgcgaagagtgtggcctgcgccaccagctgcgtcggcaagccg 349
||||||| |||||||||| | |||| | | |||| || ||||||| ||||| |||
Sbjct: 19490529 tccaagccgtgccgcctcaccaagaccggcggctgcttcaacagctgcttcggcgcgcca 19490588
Query: 350 tccccggggtgtctgaacgacacctgtagcgggttcccggagaacaccgtcacgcgcgtc 409
||||||| || || |||| |||||| |||||||||||||| ||||| ||||||||||||
Sbjct: 19490589 tccccggcctgcctcaacggcacctgcagcgggttcccggataacacggtcacgcgcgtc 19490648
Query: 410 agcaccggcgggaacctcatcaccgacgtgctgtcggtgcc 450
| | ||||| ||| |||||||||||||||| ||| ||||
Sbjct: 19490649 acggctggcggcaacatcatcaccgacgtgctctcgctgcc 19490689
Score = 184 bits (93), Expect = 2e-43
Identities = 276/337 (81%)
Strand = Plus / Plus
Query: 109 cccgagcgccgtggtgctgccggtgaggaaggacagcgcaacggggcagtacctgacggg 168
||||||||||||| ||||||||||| |||||| |||||||| ||||||| |||||
Sbjct: 19494733 cccgagcgccgtgctgctgccggtggacaaggacggcgcaacgcagcagtacgtgacgat 19494792
Query: 169 cttccggcagcgaacgccccaggtcccggtgacggccgtgctcgaccttggaggcgcctc 228
||| ||||||| ||||| || || |||| ||||||| | ||||| | ||||||
Sbjct: 19494793 gttctggcagcggacgccgagtgtgcccgtgaaggccgtggttgacctcgcgggcgccat 19494852
Query: 229 gctctgggtggactgcgacgccgggtacgtgtcctcgtcctacgcgggcgtgccgtgcgc 288
|||||||||||||||||| ||||||||| ||| ||||| || ||| ||||||||||||
Sbjct: 19494853 gctctgggtggactgcgagtccgggtacgagtcgtcgtcgtatgcgcgcgtgccgtgcgg 19494912
Query: 289 gtccaagctgtgccgcctcgcgaagagtgtggcctgcgccaccagctgcgtcggcaagcc 348
|||||||| ||||||||||||||||| | ||||| |||||| ||||| ||| | |
Sbjct: 19494913 gtccaagccttgccgcctcgcgaagagcgccgcctgtgccaccggctgctccggtgcggc 19494972
Query: 349 gtccccggggtgtctgaacgacacctgtagcgggttcccggagaacaccgtcacgcgcgt 408
||||||||| || || ||||||||||| | ||||||||||||| |||| ||||||||||
Sbjct: 19494973 gtccccgggctgcctcaacgacacctgcaccgggttcccggagtacactatcacgcgcgt 19495032
Query: 409 cagcaccggcgggaacctcatcaccgacgtgctgtcg 445
|||||||||||| ||| ||||||| ||| |||||||
Sbjct: 19495033 cagcaccggcggcaacatcatcacagacaagctgtcg 19495069
Score = 147 bits (74), Expect = 4e-32
Identities = 152/178 (85%)
Strand = Plus / Plus
Query: 110 ccgagcgccgtggtgctgccggtgaggaaggacagcgcaacggggcagtacctgacgggc 169
|||||| ||||||||||||||||||| |||||| ||| ||| ||||||| |||||
Sbjct: 19501736 ccgagctccgtggtgctgccggtgagcaaggacgacgcgacgcagcagtacgtgacgatg 19501795
Query: 170 ttccggcagcgaacgccccaggtcccggtgacggccgtgctcgaccttggaggcgcctcg 229
||||||||||| ||||| ||||| || |||| ||||||||| ||||| | ||| || |
Sbjct: 19501796 ttccggcagcggacgccgcaggtgcccgtgaaggccgtgctggacctcgcgggcaccatg 19501855
Query: 230 ctctgggtggactgcgacgccgggtacgtgtcctcgtcctacgcgggcgtgccgtgcg 287
|||||||||||||||||||||||||||||||||||||| ||||| ||||||| |||||
Sbjct: 19501856 ctctgggtggactgcgacgccgggtacgtgtcctcgtcgtacgccggcgtgcggtgcg 19501913
Score = 99.6 bits (50), Expect = 8e-18
Identities = 77/86 (89%)
Strand = Plus / Plus
Query: 365 aacgacacctgtagcgggttcccggagaacaccgtcacgcgcgtcagcaccggcgggaac 424
||||||||||| |||| ||||||| ||||||||| |||| |||||||||||| ||| |||
Sbjct: 19501991 aacgacacctgcagcgagttcccgaagaacaccgccacgagcgtcagcaccgccggcaac 19502050
Query: 425 ctcatcaccgacgtgctgtcggtgcc 450
|||||||||||||||||||| ||||
Sbjct: 19502051 atcatcaccgacgtgctgtcgctgcc 19502076
>gb|U18777.1 |MAU18777 Mycobacterium avium plasmid pLR7 Rep gene, complete cds
Length = 1828
Score = 40.1 bits (20), Expect = 6.1
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 267 cctacgcgggcgtgccgtgc 286
||||||||||||||||||||
Sbjct: 288 cctacgcgggcgtgccgtgc 307
Database: nt
Posted date: May 29, 2006 11:10 AM
Number of letters in database: 3,984,495,279
Number of sequences in database: 917,343
Database: /shigen/export/home/twatanab/db/nt/nt.01
Posted date: May 29, 2006 11:16 AM
Number of letters in database: 3,988,174,986
Number of sequences in database: 835,257
Database: /shigen/export/home/twatanab/db/nt/nt.02
Posted date: May 29, 2006 11:21 AM
Number of letters in database: 3,991,246,324
Number of sequences in database: 771,481
Database: /shigen/export/home/twatanab/db/nt/nt.03
Posted date: May 29, 2006 11:27 AM
Number of letters in database: 3,990,718,311
Number of sequences in database: 977,174
Database: /shigen/export/home/twatanab/db/nt/nt.04
Posted date: May 29, 2006 11:29 AM
Number of letters in database: 1,278,410,368
Number of sequences in database: 400,813
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,905,633
Number of Sequences: 3902068
Number of extensions: 1905633
Number of successful extensions: 39012
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 38569
Number of HSP's gapped (non-prelim): 435
length of query: 451
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 429
effective length of database: 17,147,199,772
effective search space: 7356148702188
effective search space used: 7356148702188
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)