>CYSPL_LYCES (P20721) Low-temperature-induced cysteine proteinase precursor (EC|
           3.4.22.-) (Fragment)
          Length = 346

 Score = 30.8 bits (68), Expect = 1.6
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = -3

Query: 122 PPRPTGAPRSPAKPSPDVGGFFSCRVGSPFLAGLCFLR 9
           PP+P  +P SP KP  +   +  C VG+     L F R
Sbjct: 239 PPKPAPSPPSPVKPPTECDEYSQCAVGTTCCCILQFRR 276

>MYOB_DICDI (P34092) Myosin IB heavy chain|
          Length = 1111

 Score = 30.4 bits (67), Expect = 2.0
 Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
 Frame = +1

Query: 1    GTRRKKQSPARKGEPTR---QEKKPPTSGDGFAGDRGAPVGRGGAHG 132
            G  R   +P + G P +   ++   PT   G  G RGAP+GRG   G
Sbjct: 987  GGARPMGAPQQGGAPQQGAGRQLPQPTQQGGAPGGRGAPMGRGAPGG 1033

>ADRB3_MACMU (Q28524) Beta-3 adrenergic receptor (Beta-3 adrenoceptor) (Beta-3|
           adrenoreceptor)
          Length = 418

 Score = 30.0 bits (66), Expect = 2.7
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -3

Query: 131 PCAPPRPTGAPRSPAKPSP 75
           PCA  RP  +PR+P +P P
Sbjct: 371 PCAADRPASSPRAPLRPGP 389

>BFSP1_BOVIN (Q06002) Filensin (Beaded filament structural protein 1)|
          Length = 756

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = +1

Query: 13  KKQSPARKGEPTRQEKKPPT-SGDGFAGDRGAPVGRG 120
           K + P  KG+  ++E  PP   GDG   + G P G+G
Sbjct: 543 KGEPPEGKGDSVKEEGGPPEGKGDGVKEEGGPPEGKG 579

>T22D4_HUMAN (Q9Y3Q8) TSC22 domain family protein 4 (TSC22-related-inducible|
           leucine zipper protein 2) (Tsc-22-like protein THG-1)
          Length = 395

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 18/34 (52%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
 Frame = -3

Query: 131 PCAPPRPTGAP-RSP-AKPSPDVGGFFSCRVGSP 36
           P  P  PTG P R P  +PSPD GG  + R GSP
Sbjct: 30  PPTPQPPTGPPPRLPNGEPSPDPGGKGTPRNGSP 63

>COL6_CAEEL (P18831) Cuticle collagen 6 (Protein roller-8)|
          Length = 329

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 16/44 (36%), Positives = 19/44 (43%)
 Frame = +1

Query: 1   GTRRKKQSPARKGEPTRQEKKPPTSGDGFAGDRGAPVGRGGAHG 132
           G    K  P  KG P    +   +  DG AG  G P+GR G  G
Sbjct: 195 GAMGPKGPPGPKGSPGEPPQDGKSGDDGMAGQPG-PIGRPGRDG 237

>CO6A1_HUMAN (P12109) Collagen alpha-1(VI) chain precursor|
          Length = 1028

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = +1

Query: 1   GTRRKKQSPARKGEPTRQEKKPPTSGDGFAGDRGAPVGRGGAHGD 135
           G + +K  P   GE  R   + P+  +G AG+ G P G  G  GD
Sbjct: 368 GLKGEKGEPGADGEAGRPGARGPSGDEGPAGEPGPP-GEKGEAGD 411

>CO3A1_MOUSE (P08121) Collagen alpha-1(III) chain precursor|
          Length = 1464

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 17/46 (36%), Positives = 19/46 (41%), Gaps = 2/46 (4%)
 Frame = +1

Query: 1    GTRRKKQSPARKGEPTRQEKKPPTSGDGFAGDRG--APVGRGGAHG 132
            G R +  SP   G P       P    G +GDRG   P G  GA G
Sbjct: 1031 GDRGENGSPGAPGAPGHPGPPGPVGPSGKSGDRGETGPAGPSGAPG 1076

>YQAS_BACSU (P45915) Hypothetical protein yqaS|
          Length = 239

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
 Frame = +1

Query: 1   GTRRKKQSPARKGEPTRQEKKPPTSGDGFAGDRGAPVGRGGA--HG 132
           G +RKK +P +KG  T++   P  + +    + GAP G   A  HG
Sbjct: 40  GWQRKKGAPLKKGVHTKKVGAPLGNKNALGNNGGAPKGNQNAVTHG 85

>WNT6_HUMAN (Q9Y6F9) Protein Wnt-6 precursor|
          Length = 365

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -3

Query: 125 APPRPTGAPRSPAKPSP 75
           APPRP+G P +P  P P
Sbjct: 141 APPRPSGLPGTPGPPGP 157

>HES3_RAT (Q04667) Transcription factor HES-3 (Hairy and enhancer of split 3)|
          Length = 175

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 14/36 (38%), Positives = 16/36 (44%), Gaps = 5/36 (13%)
 Frame = -3

Query: 134 SPC-----APPRPTGAPRSPAKPSPDVGGFFSCRVG 42
           SPC     AP  P G  +SP  P P +GG      G
Sbjct: 115 SPCLPAIWAPGPPAGGSQSPQSPFPPLGGLLESSTG 150

>GAR2_SCHPO (P41891) Protein gar2|
          Length = 500

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 14/32 (43%), Positives = 16/32 (50%)
 Frame = +1

Query: 37  GEPTRQEKKPPTSGDGFAGDRGAPVGRGGAHG 132
           G P R +   P +G G  G RG   GRGG  G
Sbjct: 433 GRPCRLDFSTPRTGGGSRGGRGGFGGRGGFGG 464

>CD5R2_HUMAN (Q13319) Cyclin-dependent kinase 5 activator 2 precursor (CDK5|
           activator 2) (Cyclin-dependent kinase 5 regulatory
           subunit 2) (P39) (P39I)
          Length = 367

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = +1

Query: 31  RKGEPTRQEKKPPTSGDGFAGDRGAP-VGRGG 123
           R G    ++KK P +GD   G  GAP VG+GG
Sbjct: 17  RPGGLPEEKKKAPPAGDEALGGYGAPPVGKGG 48

>CO9A2_CHICK (P12108) Collagen alpha-2(IX) chain precursor|
          Length = 677

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = +1

Query: 1   GTRRKKQSPARKGEPTRQEKKPPTSGDGFAGDRGAPVGRGGAHG 132
           G +  +  P   GEP +Q K+ P    G +G++G P G  G  G
Sbjct: 188 GLKGHRGRPGALGEPGQQGKQGPKGDVGVSGEQGVP-GPPGPQG 230

>COBS_BRAJA (Q89Q75) Cobalamin synthase (EC 2.-.-.-)|
          Length = 260

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 14/33 (42%), Positives = 15/33 (45%)
 Frame = +1

Query: 28  ARKGEPTRQEKKPPTSGDGFAGDRGAPVGRGGA 126
           AR G P      PP   DG +   GAP GR  A
Sbjct: 157 ARAGVPAFMSLVPPARPDGLSASAGAPPGRSVA 189


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.317    0.140    0.435 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,129,026
Number of Sequences: 219361
Number of extensions: 967726
Number of successful extensions: 6062
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 4750
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6020
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2618960580
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)