ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baet102c07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1MINC_PSEPK (Q88M41) Probable septum site-determining protein minC 30 3.1
2NOTC1_RAT (Q07008) Neurogenic locus notch homolog protein 1 prec... 30 3.1
3NOTC1_MOUSE (Q01705) Neurogenic locus notch homolog protein 1 pr... 30 3.1
4PPDK_GIALA (P51776) Pyruvate, phosphate dikinase (EC 2.7.9.1) (P... 30 5.3
5MNTH_STAES (Q8CPM6) Probable manganese transport protein mntH 29 6.9
6MNTH_STAEQ (Q5HQ64) Probable manganese transport protein mntH 29 6.9
7MINC_PSEAE (Q9HYZ7) Probable septum site-determining protein minC 29 6.9

>MINC_PSEPK (Q88M41) Probable septum site-determining protein minC|
          Length = 250

 Score = 30.4 bits (67), Expect = 3.1
 Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 5/67 (7%)
 Frame = -1

Query: 202 GSQQRPLTRDA-----PPPHSRQPPAK*EHPCASALRTNQVLRGGKELAAAGGDDAASMR 38
           G+++RPL  +      P P    PP        + + T+ V RGG+++ A GGD   +  
Sbjct: 111 GARERPLEPEPEVVKKPEPAPAPPPPPEPEVRPTRIITSPV-RGGQQIYAQGGDLVVTAS 169

Query: 37  ESPGLSL 17
            SPG  L
Sbjct: 170 VSPGAEL 176



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>NOTC1_RAT (Q07008) Neurogenic locus notch homolog protein 1 precursor (Notch 1)|
            [Contains: Notch 1 extracellular truncation; Notch 1
            intracellular domain]
          Length = 2531

 Score = 30.4 bits (67), Expect = 3.1
 Identities = 10/22 (45%), Positives = 17/22 (77%)
 Frame = +2

Query: 146  WLPRVRRGGIPGQWSLLAPGIS 211
            WLPR++ G +P Q++ L PG++
Sbjct: 2300 WLPRLQNGMVPSQYNPLRPGVT 2321



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>NOTC1_MOUSE (Q01705) Neurogenic locus notch homolog protein 1 precursor (Notch 1)|
            (Motch A) (mT14) (p300) [Contains: Notch 1 extracellular
            truncation; Notch 1 intracellular domain]
          Length = 2531

 Score = 30.4 bits (67), Expect = 3.1
 Identities = 10/22 (45%), Positives = 17/22 (77%)
 Frame = +2

Query: 146  WLPRVRRGGIPGQWSLLAPGIS 211
            WLPR++ G +P Q++ L PG++
Sbjct: 2300 WLPRLQNGMVPSQYNPLRPGVT 2321



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>PPDK_GIALA (P51776) Pyruvate, phosphate dikinase (EC 2.7.9.1) (Pyruvate,|
           orthophosphate dikinase)
          Length = 884

 Score = 29.6 bits (65), Expect = 5.3
 Identities = 10/20 (50%), Positives = 16/20 (80%)
 Frame = -1

Query: 337 AEPVGRLERHVHQRVEELHQ 278
           AE + +  RH+H+RVE+LH+
Sbjct: 647 AEDMNKKHRHIHERVEDLHE 666



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>MNTH_STAES (Q8CPM6) Probable manganese transport protein mntH|
          Length = 453

 Score = 29.3 bits (64), Expect = 6.9
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +2

Query: 74  QFFTTTQNLVCPQSTRTWMLLLSWWLPRVRRG 169
           Q  T+ QNL+ P   +TW+ ++SW L  V  G
Sbjct: 409 QLATSNQNLMGPFKNKTWINIISWLLIIVLSG 440



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>MNTH_STAEQ (Q5HQ64) Probable manganese transport protein mntH|
          Length = 453

 Score = 29.3 bits (64), Expect = 6.9
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +2

Query: 74  QFFTTTQNLVCPQSTRTWMLLLSWWLPRVRRG 169
           Q  T+ QNL+ P   +TW+ ++SW L  V  G
Sbjct: 409 QLATSNQNLMGPFKNKTWINIISWLLIIVLSG 440



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>MINC_PSEAE (Q9HYZ7) Probable septum site-determining protein minC|
          Length = 263

 Score = 29.3 bits (64), Expect = 6.9
 Identities = 26/79 (32%), Positives = 35/79 (44%), Gaps = 17/79 (21%)
 Frame = -1

Query: 202 GSQQRPLT---------RDAPPP---HSRQPPAK*EH-PCASALRTNQVL----RGGKEL 74
           G+++RPL           + P P    +R  PAK E  P     R  +V+    RGG ++
Sbjct: 111 GARERPLDIKDSAPRKPAEEPSPSAGEARPEPAKAEEKPAEPVSRPTKVVKTPVRGGMQI 170

Query: 73  AAAGGDDAASMRESPGLSL 17
            AAGGD       SPG  L
Sbjct: 171 YAAGGDLIVLAAVSPGAEL 189


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,639,919
Number of Sequences: 219361
Number of extensions: 812053
Number of successful extensions: 2612
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2459
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2604
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 3970331829
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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