ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet102c06 |
|---|---|
| Clone Library Name | barley_pub |
>GGR_ARATH (Q39108) Geranylgeranyl pyrophosphate synthase-related protein,| chloroplast precursor Length = 326 Score = 72.4 bits (176), Expect = 4e-13 Identities = 34/62 (54%), Positives = 46/62 (74%) Frame = +1 Query: 202 SFDLRRYWTSLISEVEGELDAAMPIRPPESIHNAMRHAVLPGAGKEGAAKRAPPVLCVAA 381 +FDLR YWT+LI+E+ +LD A+P++ P I+ AMR++VL AKRAPPV+CVAA Sbjct: 44 NFDLRTYWTTLITEINQKLDEAIPVKHPAGIYEAMRYSVL-----AQGAKRAPPVMCVAA 98 Query: 382 CE 387 CE Sbjct: 99 CE 100
>GGPP4_ARATH (Q9SLG2) Geranylgeranyl pyrophosphate synthetase 4 precursor (GGPP| synthetase 4) (GGPS4) [Includes: Dimethylallyltranstransferase (EC 2.5.1.1); Geranyltranstransferase (EC 2.5.1.10); Farnesyltranstransferase (EC 2.5.1.29)] Length = 372 Score = 53.1 bits (126), Expect = 3e-07 Identities = 27/62 (43%), Positives = 36/62 (58%) Frame = +1 Query: 202 SFDLRRYWTSLISEVEGELDAAMPIRPPESIHNAMRHAVLPGAGKEGAAKRAPPVLCVAA 381 SFD + Y S + LD A+P+ P +IH AMR+A+L G KR P+LC+AA Sbjct: 78 SFDFKPYMISKAETINRALDEAIPLIEPLNIHKAMRYAILAG------GKRVRPILCLAA 131 Query: 382 CE 387 CE Sbjct: 132 CE 133
>GGPPS_SINAL (Q43133) Geranylgeranyl pyrophosphate synthetase, chloroplast| precursor (GGPP synthetase) (GGPS) [Includes: Dimethylallyltranstransferase (EC 2.5.1.1); Geranyltranstransferase (EC 2.5.1.10); Farnesyltranstransferase (EC 2.5.1.29)] Length = 366 Score = 53.1 bits (126), Expect = 3e-07 Identities = 28/62 (45%), Positives = 35/62 (56%) Frame = +1 Query: 202 SFDLRRYWTSLISEVEGELDAAMPIRPPESIHNAMRHAVLPGAGKEGAAKRAPPVLCVAA 381 SFD Y V LD+A+P+R P IH AMR+++L G KR PVLC+AA Sbjct: 69 SFDFMSYIIRKADSVNKALDSAVPLREPLKIHEAMRYSLLAG------GKRVRPVLCIAA 122 Query: 382 CE 387 CE Sbjct: 123 CE 124
>GGPP1_ARATH (P34802) Geranylgeranyl pyrophosphate synthetase 1, chloroplast| precursor (GGPP synthetase 1) (GGPS1) [Includes: Dimethylallyltranstransferase (EC 2.5.1.1); Geranyltranstransferase (EC 2.5.1.10); Farnesyltranstransferase (EC 2.5.1.29)] Length = 371 Score = 52.8 bits (125), Expect = 4e-07 Identities = 28/62 (45%), Positives = 36/62 (58%) Frame = +1 Query: 202 SFDLRRYWTSLISEVEGELDAAMPIRPPESIHNAMRHAVLPGAGKEGAAKRAPPVLCVAA 381 SFD Y + V LD+A+P+R P IH AMR+++L G KR PVLC+AA Sbjct: 73 SFDFMSYIITKAELVNKALDSAVPLREPLKIHEAMRYSLLAG------GKRVRPVLCIAA 126 Query: 382 CE 387 CE Sbjct: 127 CE 128
>GGPPS_HEVBR (Q94ID7) Geranylgeranyl pyrophosphate synthetase, chloroplast| precursor (GGPP synthetase) [Includes: Dimethylallyltranstransferase (EC 2.5.1.1); Geranyltranstransferase (EC 2.5.1.10); Farnesyltranstransferase (EC 2.5.1.29)] Length = 370 Score = 52.4 bits (124), Expect = 5e-07 Identities = 25/63 (39%), Positives = 37/63 (58%) Frame = +1 Query: 199 PSFDLRRYWTSLISEVEGELDAAMPIRPPESIHNAMRHAVLPGAGKEGAAKRAPPVLCVA 378 PSFD + Y + + L+AA+P++ P IH +MR+++L G KR P LC+A Sbjct: 75 PSFDFKSYMLQKGNSINQALEAAIPLQEPAKIHESMRYSLLAG------GKRVRPALCLA 128 Query: 379 ACE 387 ACE Sbjct: 129 ACE 131
>GGPPS_CATRO (Q42698) Geranylgeranyl pyrophosphate synthetase, chloroplast| precursor (GGPP synthetase) (GGPS) [Includes: Dimethylallyltranstransferase (EC 2.5.1.1); Geranyltranstransferase (EC 2.5.1.10); Farnesyltranstransferase (EC 2.5.1.29)] Length = 357 Score = 47.4 bits (111), Expect = 2e-05 Identities = 24/62 (38%), Positives = 35/62 (56%) Frame = +1 Query: 202 SFDLRRYWTSLISEVEGELDAAMPIRPPESIHNAMRHAVLPGAGKEGAAKRAPPVLCVAA 381 SFD + Y + V L+ A+ +R P IH +MR+++L G KR P+LC+AA Sbjct: 63 SFDFKAYMIGKANSVNKALEDAVLVREPLKIHESMRYSLLAG------GKRVRPMLCIAA 116 Query: 382 CE 387 CE Sbjct: 117 CE 118
>GGPP2_ARATH (O04046) Geranylgeranyl pyrophosphate synthetase 2 precursor (GGPP| synthetase 2) (GGPS2) [Includes: Dimethylallyltranstransferase (EC 2.5.1.1); Geranyltranstransferase (EC 2.5.1.10); Farnesyltranstransferase (EC 2.5.1.29)] Length = 376 Score = 47.0 bits (110), Expect = 2e-05 Identities = 24/62 (38%), Positives = 34/62 (54%) Frame = +1 Query: 202 SFDLRRYWTSLISEVEGELDAAMPIRPPESIHNAMRHAVLPGAGKEGAAKRAPPVLCVAA 381 +F+ Y S V L+ A+P+ P IH AMR+A+L A KR P+LC+A+ Sbjct: 82 TFEFDPYMMSKAESVNKALEEAIPVGEPLKIHEAMRYAIL------AAGKRVRPILCLAS 135 Query: 382 CE 387 CE Sbjct: 136 CE 137
>GGPP3_ARATH (Q9LUD9) Geranylgeranyl pyrophosphate synthetase 3, chloroplast| precursor (GGPP synthetase 3) (GGPS3) [Includes: Dimethylallyltranstransferase (EC 2.5.1.1); Geranyltranstransferase (EC 2.5.1.10); Farnesyltranstransferase (EC 2.5.1.29)] Length = 360 Score = 45.4 bits (106), Expect = 6e-05 Identities = 21/62 (33%), Positives = 34/62 (54%) Frame = +1 Query: 202 SFDLRRYWTSLISEVEGELDAAMPIRPPESIHNAMRHAVLPGAGKEGAAKRAPPVLCVAA 381 +FD + Y V LD ++P+R P ++ A+R+++L G KR P+LC+A Sbjct: 63 AFDFKLYMIRKAESVNAALDVSVPLREPLTVQEAVRYSLLAG------GKRVRPLLCIAV 116 Query: 382 CE 387 CE Sbjct: 117 CE 118
>GGPPS_CAPAN (P80042) Geranylgeranyl pyrophosphate synthetase, chloroplast| precursor (GGPP synthetase) (GGPS) [Includes: Dimethylallyltranstransferase (EC 2.5.1.1); Geranyltranstransferase (EC 2.5.1.10); Farnesyltranstransferase (EC 2.5.1.29)] Length = 369 Score = 45.1 bits (105), Expect = 8e-05 Identities = 24/61 (39%), Positives = 34/61 (55%) Frame = +1 Query: 205 FDLRRYWTSLISEVEGELDAAMPIRPPESIHNAMRHAVLPGAGKEGAAKRAPPVLCVAAC 384 F+ + Y T V LD A+ ++ P IH AMR+++L G KR P+LC+AAC Sbjct: 76 FNFKIYVTEKAISVNKALDEAIIVKEPHVIHEAMRYSLLAG------GKRVRPMLCLAAC 129 Query: 385 E 387 E Sbjct: 130 E 130
>GGPP6_ARATH (O22043) Geranylgeranyl pyrophosphate synthetase 6, mitochondrial| precursor (GGPP synthetase 6) (GGPS6) [Includes: Dimethylallyltranstransferase (EC 2.5.1.1); Geranyltranstransferase (EC 2.5.1.10); Farnesyltranstransferase (EC 2.5.1.29)] Length = 336 Score = 35.8 bits (81), Expect = 0.046 Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 8/64 (12%) Frame = +1 Query: 220 YWTSLISEVEGELDAAMPI--------RPPESIHNAMRHAVLPGAGKEGAAKRAPPVLCV 375 Y + + LD ++P+ P +H AMR+ +LPG KR P+LC+ Sbjct: 35 YMKNKAKSINKALDNSIPLCNNFVPLWEPVLEVHKAMRYTLLPGG------KRVRPMLCL 88 Query: 376 AACE 387 ACE Sbjct: 89 VACE 92
>CRTE_CYAPA (P48368) Geranylgeranyl pyrophosphate synthetase homolog (EC| 2.5.1.29) (GGPP synthetase) (Farnesyltranstransferase) Length = 300 Score = 33.5 bits (75), Expect = 0.23 Identities = 19/62 (30%), Positives = 34/62 (54%) Frame = +1 Query: 202 SFDLRRYWTSLISEVEGELDAAMPIRPPESIHNAMRHAVLPGAGKEGAAKRAPPVLCVAA 381 +F+L Y VE L+ ++P P I++++R+++ G KR P+LC+A+ Sbjct: 7 NFNLLTYLYERKEIVEDTLNKSIPRGNPTFIYDSIRYSLSAGG------KRIRPILCLAS 60 Query: 382 CE 387 CE Sbjct: 61 CE 62
>NHR64_CAEEL (O44960) Nuclear hormone receptor family member nhr-64| Length = 412 Score = 29.6 bits (65), Expect = 3.3 Identities = 12/28 (42%), Positives = 16/28 (57%) Frame = +1 Query: 289 SIHNAMRHAVLPGAGKEGAAKRAPPVLC 372 SI N M +LP GK K +PP++C Sbjct: 383 SIDNLMLELMLPNEGKNTTDKTSPPIMC 410
>TRIM7_HUMAN (Q9C029) Tripartite motif protein 7 (Glycogenin-interacting| protein) (RING finger protein 90) Length = 511 Score = 28.5 bits (62), Expect = 7.4 Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 11/56 (19%) Frame = +1 Query: 229 SLISEVEGELDAAMPI---RPPESI---HNAMRHAV-----LPGAGKEGAAKRAPP 363 +L +E++GE ++ + R P S+ H+ R + PGAG GAA RAPP Sbjct: 18 ALAAELQGEATCSICLELFREPVSVECGHSFCRACIGRCWERPGAGSVGAATRAPP 73
>RPOB2_METJA (Q58444) DNA-directed RNA polymerase subunit B'' (EC 2.7.7.6)| Length = 498 Score = 28.1 bits (61), Expect = 9.7 Identities = 17/57 (29%), Positives = 26/57 (45%) Frame = +1 Query: 202 SFDLRRYWTSLISEVEGELDAAMPIRPPESIHNAMRHAVLPGAGKEGAAKRAPPVLC 372 S D R++ ++ ++ E+ I PE + V PG K+ KRA VLC Sbjct: 240 SIDDERFFMEIVLNIQ-EIREEHNINSPEDALEFIGKRVAPGQAKDYRLKRAETVLC 295 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 37,380,642 Number of Sequences: 219361 Number of extensions: 511215 Number of successful extensions: 2713 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 2671 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2703 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2511994855 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
