>IF4G2_MOUSE (Q62448) Eukaryotic translation initiation factor 4 gamma 2|
           (eIF-4-gamma 2) (eIF-4G 2) (eIF4G 2) (p97) (Novel
           APOBEC-1 target 1) (Translation repressor NAT1)
          Length = 906

 Score = 45.8 bits (107), Expect = 2e-05
 Identities = 33/111 (29%), Positives = 54/111 (48%), Gaps = 2/111 (1%)
 Frame = +1

Query: 1   IRSLQELSAPE-YNAMFLKKLITLAMDRKNREKEMAXXXXXXXXXXXXXTGD-IMKGFIM 174
           +  ++E+ AP+ +    L K+I L++DR + +KE A             T D  M+ F+ 
Sbjct: 564 VSGVREMRAPKHFLPEMLSKVIILSLDRSDEDKEKASSLISLLKQEGIATSDNFMQAFLN 623

Query: 175 LLQSAEDTALDIVDAPSELALFLARAVIDEVLVPLNLDDISSKLRPNSSGS 327
           +L+      +DI    S LA F ARA+I E++       IS   +P  SG+
Sbjct: 624 VLEQCPKLEVDIPLVKSYLAQFAARAIISELV------SISELAQPLESGT 668

>IF4G2_HUMAN (P78344) Eukaryotic translation initiation factor 4 gamma 2|
           (eIF-4-gamma 2) (eIF-4G 2) (eIF4G 2) (p97)
           (Death-associated protein 5) (DAP-5)
          Length = 907

 Score = 45.4 bits (106), Expect = 3e-05
 Identities = 33/111 (29%), Positives = 53/111 (47%), Gaps = 2/111 (1%)
 Frame = +1

Query: 1   IRSLQELSAPE-YNAMFLKKLITLAMDRKNREKEMAXXXXXXXXXXXXXTGD-IMKGFIM 174
           +  ++E+ AP+ +    L K+I L++DR + +KE A             T D  M+ F+ 
Sbjct: 565 VNGVREMRAPKHFLPEMLSKVIILSLDRSDEDKEKASSLISLLKQEGIATSDNFMQAFLN 624

Query: 175 LLQSAEDTALDIVDAPSELALFLARAVIDEVLVPLNLDDISSKLRPNSSGS 327
           +L       +DI    S LA F ARA+I E++       IS   +P  SG+
Sbjct: 625 VLDQCPKLEVDIPLVKSYLAQFAARAIISELV------SISELAQPLESGT 669

>IF4G2_RABIT (P79398) Eukaryotic translation initiation factor 4 gamma 2|
           (eIF-4-gamma 2) (eIF-4G 2) (eIF4G 2) (p97) (Novel
           APOBEC-1 target 1) (Translation repressor NAT1)
          Length = 907

 Score = 45.1 bits (105), Expect = 4e-05
 Identities = 33/111 (29%), Positives = 53/111 (47%), Gaps = 2/111 (1%)
 Frame = +1

Query: 1   IRSLQELSAPE-YNAMFLKKLITLAMDRKNREKEMAXXXXXXXXXXXXXTGD-IMKGFIM 174
           +  ++E+ AP+ +    L K+I L++DR + +KE A             T D  M+ F+ 
Sbjct: 565 VNGVKEMRAPKHFLPEMLSKVIILSLDRSDEDKEKASSLISLLKQEGIGTSDNFMQAFLN 624

Query: 175 LLQSAEDTALDIVDAPSELALFLARAVIDEVLVPLNLDDISSKLRPNSSGS 327
           +L       +DI    S LA F ARA+I E++       IS   +P  SG+
Sbjct: 625 VLDQCPKLEVDIPLVKSYLAQFAARAIISELV------SISELAQPLESGT 669

>IF4G2_BOVIN (Q95L46) Eukaryotic translation initiation factor 4 gamma 2|
           (eIF-4-gamma 2) (eIF-4G 2) (eIF4G 2) (p97) (Fragment)
          Length = 136

 Score = 37.0 bits (84), Expect = 0.011
 Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
 Frame = +1

Query: 1   IRSLQELSAPE-YNAMFLKKLITLAMDRKNREKEMAXXXXXXXXXXXXXTGD-IMKGFIM 174
           +  ++E+ AP+ +    L K+I L++DR + +KE A             T D  M+ F+ 
Sbjct: 52  VNGVREMRAPKHFLPEMLSKVIILSLDRSDEDKEKASSLISLLKQEGIATSDNFMQAFLN 111

Query: 175 LLQSAEDTALDIVDAPSELALFLAR 249
           +L       +DI    S LA F AR
Sbjct: 112 VLDQCPKLEVDIPLVKSYLAQFAAR 136

>IF41_WHEAT (Q03387) Eukaryotic initiation factor iso-4F subunit p82-34|
           (eIF-(iso)4F p82-34)
          Length = 788

 Score = 34.7 bits (78), Expect = 0.056
 Identities = 19/84 (22%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
 Frame = +1

Query: 10  LQELSAPEYNAMFLKKLITLAMDR-KNREKEMAXXXXXXXXXXXXXTGDIMKGFIMLLQS 186
           ++EL +P+Y+   +K+ I LA+D+  +    +              T D+  G ++    
Sbjct: 647 IEELQSPDYHPEIVKEAINLALDKGASFVDPLVKLLEHLYTKKTFKTEDLENGCLLYGSL 706

Query: 187 AEDTALDIVDAPSELALFLARAVI 258
            ED  +D+  AP++    +AR ++
Sbjct: 707 LEDIGIDLPKAPTQFGEVVARLIL 730

>FUMC_SYNY3 (Q55674) Fumarate hydratase class II (EC 4.2.1.2) (Fumarase C)|
          Length = 466

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 19/72 (26%), Positives = 37/72 (51%)
 Frame = +1

Query: 151 DIMKGFIMLLQSAEDTALDIVDAPSELALFLARAVIDEVLVPLNLDDISSKLRPNSSGSQ 330
           D+++ F +L ++A  T  D+   P++ A  +  A  DE++    LD    ++    SG+Q
Sbjct: 44  DLIRAFAILKKAAAITNQDLGKLPADKAELIITAA-DEIIAGQWLDHFPLRIWQTGSGTQ 102

Query: 331 TVQMASSLLAAR 366
           T    + ++A R
Sbjct: 103 TNMNVNEVIANR 114

>Y346_CHLPN (Q9Z8J7) Probable metal transport system membrane protein|
           CPn_0346/CP0414/CPj0346/CpB0353
          Length = 324

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 19/61 (31%), Positives = 33/61 (54%)
 Frame = -3

Query: 227 SLGASTMSRAVSSADCRSIMNPFMISPVENSSKLSEERSTEAISFSLFFLSIARVMSFLR 48
           SLG  T++     A   +++  F+I  + N+ K+SEE ST  +   LF LS+  ++   +
Sbjct: 92  SLGTLTLA-----AMATAMLTGFLIYFIRNTFKVSEESSTALVFSLLFSLSLVLLVFMTK 146

Query: 47  N 45
           N
Sbjct: 147 N 147

>TTC12_HUMAN (Q9H892) Tetratricopeptide repeat protein 12 (TPR repeat protein|
           12)
          Length = 705

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 13/33 (39%), Positives = 22/33 (66%)
 Frame = -3

Query: 185 DCRSIMNPFMISPVENSSKLSEERSTEAISFSL 87
           +CR+ +N  MISP + + K +EE ++EA   S+
Sbjct: 56  ECRTTLNKTMISPPQTALKSAEEINSEAFLASV 88

>SYV_BUCAP (Q8K9I1) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)|
            (ValRS)
          Length = 960

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = -2

Query: 273  NQDFIDHCPSQEEGKFTRSIHNVKGSVFC*LQKHYESLHDITCGK 139
            NQDF+ + P     K  + + ++   ++  L +  ESLHD  C K
Sbjct: 912  NQDFLSYAPKNIIDKEIKKLKSLN-EIYLTLSQQLESLHDAFCKK 955

>E2F5_RAT (Q62814) Transcription factor E2F5 (E2F-5) (Fragment)|
          Length = 300

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 17/46 (36%), Positives = 23/46 (50%)
 Frame = +1

Query: 166 FIMLLQSAEDTALDIVDAPSELALFLARAVIDEVLVPLNLDDISSK 303
           F+ LLQ A+D  LD+  A   LA+   R + D   V   +D I  K
Sbjct: 17  FVSLLQEAQDGVLDLKAAADTLAVRQKRRIYDITNVLEGIDLIEKK 62

>CYF_EUGGR (Q8GZR2) Apocytochrome f, chloroplast precursor|
          Length = 496

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 19/58 (32%), Positives = 30/58 (51%)
 Frame = -3

Query: 230 SSLGASTMSRAVSSADCRSIMNPFMISPVENSSKLSEERSTEAISFSLFFLSIARVMS 57
           SS  A+++S A +S   + I NP +I+P    S  SE+ + EA      F  +A + S
Sbjct: 27  SSNAATSLSVAPASTSTQIIANPSVIAPQYQGSVTSEDVAMEASQTD--FAEVAEISS 82

>DPO3A_MYCPN (P75404) DNA polymerase III alpha subunit (EC 2.7.7.7)|
          Length = 872

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 19/80 (23%), Positives = 38/80 (47%), Gaps = 6/80 (7%)
 Frame = -3

Query: 248 LARKRASSLGASTMSRAVSSADCRSIMNPFMISPVENSSKLSEERSTE------AISFSL 87
           L + +ASSL  S     + S  C+  +  F+    + + +L EER  +      ++ F+ 
Sbjct: 232 LTKLKASSLQVSHNDAQMLSEQCQLALTEFLKLNPQLNKQLYEERLAKELEIINSLHFAS 291

Query: 86  FFLSIARVMSFLRNMALYSG 27
           +FL ++ ++ F  N  +  G
Sbjct: 292 YFLVVSDLVQFAHNNDILIG 311

>CY43_TRYBB (Q99280) Receptor-type adenylate cyclase GRESAG 4.3 (EC 4.6.1.1) (ATP|
            pyrophosphate-lyase) (Adenylyl cyclase)
          Length = 1229

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 20/78 (25%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
 Frame = -3

Query: 278  NGTKTSSITALARKRASSLGASTMSRAVSSAD--CRSIMNPFMISPVENSSKLSEERSTE 105
            NG  T+    +A   A+ +   +M+RA+ S +   ++ M+P ++  V N + L+  +   
Sbjct: 790  NGVVTAD-DCMANFGATDISVWSMARALRSDEPLLQNPMSPSLVYTVPNGNALTPAQLAG 848

Query: 104  AISFSLFFLSIARVMSFL 51
             +  SLF +++A  +S L
Sbjct: 849  VVGGSLFVVALAICLSVL 866

>E2F5_MOUSE (Q61502) Transcription factor E2F5 (E2F-5)|
          Length = 335

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 17/46 (36%), Positives = 23/46 (50%)
 Frame = +1

Query: 166 FIMLLQSAEDTALDIVDAPSELALFLARAVIDEVLVPLNLDDISSK 303
           F+ LLQ A+D  LD+  A   LA+   R + D   V   +D I  K
Sbjct: 52  FVSLLQEAQDGVLDLKAAADTLAVRQKRRIYDITNVLEGIDLIEKK 97

>ORC1_HUMAN (Q13415) Origin recognition complex subunit 1 (Replication control|
           protein 1)
          Length = 861

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 27/98 (27%), Positives = 38/98 (38%), Gaps = 5/98 (5%)
 Frame = -3

Query: 365 RAASRELAIWTVXXXXXXXXXXXXXXSKFNGTKTSSITALARKR--ASSLGASTMSRAVS 192
           ++ S E   WT               SK   T T  +T  ARKR    +LG   MS+  S
Sbjct: 193 KSKSAESPSWTPAEHVAKRIESRHSASKSRQTPTHPLTPRARKRLELGNLGNPQMSQQTS 252

Query: 191 SADCRS---IMNPFMISPVENSSKLSEERSTEAISFSL 87
            A   S   I      S + + SK S+    + +S +L
Sbjct: 253 CASLDSPGRIKRKVAFSEITSPSKRSQPDKLQTLSPAL 290

>E2F5_HUMAN (Q15329) Transcription factor E2F5 (E2F-5)|
          Length = 346

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 17/46 (36%), Positives = 23/46 (50%)
 Frame = +1

Query: 166 FIMLLQSAEDTALDIVDAPSELALFLARAVIDEVLVPLNLDDISSK 303
           F+ LLQ A+D  LD+  A   LA+   R + D   V   +D I  K
Sbjct: 62  FVSLLQEAKDGVLDLKAAADTLAVRQKRRIYDITNVLEGIDLIEKK 107

>LIVJ_SALTY (P17215) Leu/Ile/Val/Thr-binding protein precursor (LIVT-BP)|
          Length = 365

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 15/38 (39%), Positives = 24/38 (63%)
 Frame = +1

Query: 178 LQSAEDTALDIVDAPSELALFLARAVIDEVLVPLNLDD 291
           LQS +   L+  D P+E+A +L  A +D V+ PL+ D+
Sbjct: 305 LQSLQ-AGLNHSDDPAEIAKYLKGATVDTVMGPLSWDE 341

>KPTA_HALMA (Q5UXB8) Probable RNA 2'-phosphotransferase (EC 2.7.-.-)|
          Length = 222

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 23/64 (35%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
 Frame = +1

Query: 193 DTALDIVDAPSELALFLARAVIDEVLVPLNLDDI-SSKLRPNSSGSQTVQMASSLLAARH 369
           D  LD  D P    L+   A       P N+D I  + L+P S   QTV ++ S  AAR 
Sbjct: 123 DVTLDGTDDPVPATLYHGTA-------PRNVDSIREAGLKPMSR--QTVHLSESAAAARE 173

Query: 370 SGER 381
            G R
Sbjct: 174 VGRR 177

>SPEG_RAT (Q63638) Striated muscle-specific serine/threonine protein kinase|
           (EC 2.7.11.1) (Aortic preferentially expressed protein
           1) (APEG-1)
          Length = 3259

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = -3

Query: 212 TMSRAVSSADCRSIMNPFMISPVENSSKLSEERSTEAISFSLFFL 78
           T SRA+   +CRS + PF   P E+ +K    R  E  + ++ FL
Sbjct: 604 TRSRAIQ--ECRSPVPPFTADPPESRTKAPSARKREPPAQAVRFL 646

>PAN3_YEAST (P36102) PAB-dependent poly(A)-specific ribonuclease subunit PAN3|
           (EC 3.1.13.4) (PAB1P-dependent poly(A)-nuclease)
          Length = 679

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 15/60 (25%), Positives = 32/60 (53%)
 Frame = -3

Query: 266 TSSITALARKRASSLGASTMSRAVSSADCRSIMNPFMISPVENSSKLSEERSTEAISFSL 87
           + S+T +    +++  A+      +++   S +NP MI+P+ NSS ++   +   IS S+
Sbjct: 81  SDSLTTVTNTTSAATNATGNIAMAATSATASTVNP-MINPIVNSSLVNNNNNNSNISISI 139

>TTC12_MACFA (Q95LY5) Tetratricopeptide repeat protein 12 (TPR repeat protein|
           12) (Fragment)
          Length = 577

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 12/33 (36%), Positives = 22/33 (66%)
 Frame = -3

Query: 185 DCRSIMNPFMISPVENSSKLSEERSTEAISFSL 87
           +CR+ +N  +ISP + + K +EE ++EA   S+
Sbjct: 56  ECRTTLNKTVISPPQTAVKSAEEVNSEAFLASV 88


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,671,846
Number of Sequences: 219361
Number of extensions: 960603
Number of successful extensions: 2524
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 2490
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2524
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 1370455656
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)