ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet102b09 |
|---|---|
| Clone Library Name | barley_pub |
>CAHC_HORVU (P40880) Carbonic anhydrase, chloroplast precursor (EC 4.2.1.1)| (Carbonate dehydratase) Length = 324 Score = 235 bits (599), Expect = 5e-62 Identities = 115/116 (99%), Positives = 116/116 (100%) Frame = +3 Query: 114 MDAAVERLKTGFEKFKTEVYDKKPDFFEPLKAGQAPKYMVFACADSRVCPSVTLGLEPGE 293 MDAAVERLKTGFEKFKTEVYDKKPDFFEPLKAGQAPKYMVFACADSRVCPSVTLGLEPGE Sbjct: 123 MDAAVERLKTGFEKFKTEVYDKKPDFFEPLKAGQAPKYMVFACADSRVCPSVTLGLEPGE 182 Query: 294 AFTIRNIANMVPAYCKNKYAGVGSAIEYAVCALKVEVIVVIGHSRCGGIKALLSLR 461 AFTIRNIANMVPAYCKNKYAGVGSAIEYAVCALKVEVIVVIGHSRCGGIKALLSL+ Sbjct: 183 AFTIRNIANMVPAYCKNKYAGVGSAIEYAVCALKVEVIVVIGHSRCGGIKALLSLK 238
>CAHC_TOBAC (P27141) Carbonic anhydrase, chloroplast precursor (EC 4.2.1.1)| (Carbonate dehydratase) Length = 321 Score = 155 bits (392), Expect = 5e-38 Identities = 75/111 (67%), Positives = 87/111 (78%) Frame = +3 Query: 126 VERLKTGFEKFKTEVYDKKPDFFEPLKAGQAPKYMVFACADSRVCPSVTLGLEPGEAFTI 305 VE +K GF FKTE Y+K P + L GQ+PK+MVFAC+DSRVCPS L +PGEAF + Sbjct: 114 VEHMKAGFIHFKTEKYEKNPALYGELSKGQSPKFMVFACSDSRVCPSHVLNFQPGEAFVV 173 Query: 306 RNIANMVPAYCKNKYAGVGSAIEYAVCALKVEVIVVIGHSRCGGIKALLSL 458 RNIANMVPAY K +Y+GVG+AIEYAV LKVE IVVIGHS CGGIK L+SL Sbjct: 174 RNIANMVPAYDKTRYSGVGAAIEYAVLHLKVENIVVIGHSACGGIKGLMSL 224
>CAHC_SPIOL (P16016) Carbonic anhydrase, chloroplast precursor (EC 4.2.1.1)| (Carbonate dehydratase) Length = 319 Score = 154 bits (389), Expect = 1e-37 Identities = 75/110 (68%), Positives = 87/110 (79%) Frame = +3 Query: 126 VERLKTGFEKFKTEVYDKKPDFFEPLKAGQAPKYMVFACADSRVCPSVTLGLEPGEAFTI 305 V+R+K GF KFK E Y+K P + L GQAPK+MVFAC+DSRVCPS L +PGEAF + Sbjct: 112 VQRIKEGFIKFKKEKYEKNPALYGELSKGQAPKFMVFACSDSRVCPSHVLDFQPGEAFMV 171 Query: 306 RNIANMVPAYCKNKYAGVGSAIEYAVCALKVEVIVVIGHSRCGGIKALLS 455 RNIANMVP + K+KYAGVG+AIEYAV LKVE IVVIGHS CGGIK L+S Sbjct: 172 RNIANMVPVFDKDKYAGVGAAIEYAVLHLKVENIVVIGHSACGGIKGLMS 221
>CAHX_FLABR (P46511) Carbonic anhydrase (EC 4.2.1.1) (Carbonate dehydratase)| Length = 330 Score = 149 bits (376), Expect = 3e-36 Identities = 69/110 (62%), Positives = 87/110 (79%) Frame = +3 Query: 126 VERLKTGFEKFKTEVYDKKPDFFEPLKAGQAPKYMVFACADSRVCPSVTLGLEPGEAFTI 305 VER+K+GF KFKTE + P ++ L GQ+PK+MVFAC+DSRVCPS L +PGEAF + Sbjct: 123 VERIKSGFVKFKTEKFVTNPALYDELAKGQSPKFMVFACSDSRVCPSHVLDFQPGEAFVV 182 Query: 306 RNIANMVPAYCKNKYAGVGSAIEYAVCALKVEVIVVIGHSRCGGIKALLS 455 RN+ANMVP + K KY+GVG+A+EYAV LKV+ I VIGHSRCGGIK L++ Sbjct: 183 RNVANMVPPFDKTKYSGVGAAVEYAVLHLKVQEIFVIGHSRCGGIKGLMT 232
>CAHX_FLABI (P46510) Carbonic anhydrase (EC 4.2.1.1) (Carbonate dehydratase)| Length = 330 Score = 149 bits (376), Expect = 3e-36 Identities = 69/110 (62%), Positives = 87/110 (79%) Frame = +3 Query: 126 VERLKTGFEKFKTEVYDKKPDFFEPLKAGQAPKYMVFACADSRVCPSVTLGLEPGEAFTI 305 VER+K+GF KFKTE + P ++ L GQ+PK+MVFAC+DSRVCPS L +PGEAF + Sbjct: 123 VERIKSGFVKFKTEKFVTNPALYDELAKGQSPKFMVFACSDSRVCPSHVLDFQPGEAFVV 182 Query: 306 RNIANMVPAYCKNKYAGVGSAIEYAVCALKVEVIVVIGHSRCGGIKALLS 455 RN+ANMVP + K KY+GVG+A+EYAV LKV+ I VIGHSRCGGIK L++ Sbjct: 183 RNVANMVPPFDKTKYSGVGAAVEYAVLHLKVQEIFVIGHSRCGGIKGLMT 232
>CAH1_FLALI (P46512) Carbonic anhydrase 1 (EC 4.2.1.1) (Carbonate dehydratase| 1) Length = 330 Score = 149 bits (376), Expect = 3e-36 Identities = 69/110 (62%), Positives = 87/110 (79%) Frame = +3 Query: 126 VERLKTGFEKFKTEVYDKKPDFFEPLKAGQAPKYMVFACADSRVCPSVTLGLEPGEAFTI 305 VER+K+GF KFKTE + P ++ L GQ+PK+MVFAC+DSRVCPS L +PGEAF + Sbjct: 123 VERIKSGFVKFKTEKFVTNPALYDELAKGQSPKFMVFACSDSRVCPSHVLDFQPGEAFVV 182 Query: 306 RNIANMVPAYCKNKYAGVGSAIEYAVCALKVEVIVVIGHSRCGGIKALLS 455 RN+ANMVP + K KY+GVG+A+EYAV LKV+ I VIGHSRCGGIK L++ Sbjct: 183 RNVANMVPPFDKTKYSGVGAAVEYAVLHLKVQEIFVIGHSRCGGIKGLMT 232
>CAHX_FLAPR (P46281) Carbonic anhydrase (EC 4.2.1.1) (Carbonate dehydratase)| Length = 329 Score = 149 bits (375), Expect = 4e-36 Identities = 69/110 (62%), Positives = 87/110 (79%) Frame = +3 Query: 126 VERLKTGFEKFKTEVYDKKPDFFEPLKAGQAPKYMVFACADSRVCPSVTLGLEPGEAFTI 305 VER+K+GF KFKTE + P ++ L GQ+PK+MVFAC+DSRVCPS L +PGEAF + Sbjct: 122 VERIKSGFVKFKTEKFVTNPVLYDELAKGQSPKFMVFACSDSRVCPSHVLDFQPGEAFVV 181 Query: 306 RNIANMVPAYCKNKYAGVGSAIEYAVCALKVEVIVVIGHSRCGGIKALLS 455 RN+ANMVP + K KY+GVG+A+EYAV LKV+ I VIGHSRCGGIK L++ Sbjct: 182 RNVANMVPPFDKTKYSGVGAAVEYAVLHLKVQEIFVIGHSRCGGIKGLMT 231
>CAH2_ARATH (P42737) Carbonic anhydrase 2 (EC 4.2.1.1) (Carbonate dehydratase| 2) Length = 259 Score = 147 bits (372), Expect = 1e-35 Identities = 73/110 (66%), Positives = 83/110 (75%) Frame = +3 Query: 126 VERLKTGFEKFKTEVYDKKPDFFEPLKAGQAPKYMVFACADSRVCPSVTLGLEPGEAFTI 305 VER+K GF FK E Y+ P + L GQ+PKYMVFAC+DSRVCPS L PG+AF + Sbjct: 52 VERIKEGFVTFKKEKYETNPALYGELAKGQSPKYMVFACSDSRVCPSHVLDFHPGDAFVV 111 Query: 306 RNIANMVPAYCKNKYAGVGSAIEYAVCALKVEVIVVIGHSRCGGIKALLS 455 RNIANMVP + K KYAGVG+AIEYAV LKVE IVVIGHS CGGIK L+S Sbjct: 112 RNIANMVPPFDKVKYAGVGAAIEYAVLHLKVENIVVIGHSACGGIKGLMS 161
>CAHC_PEA (P17067) Carbonic anhydrase, chloroplast precursor (EC 4.2.1.1)| (Carbonate dehydratase) [Contains: Carbonic anhydrase, 27 kDa isoform; Carbonic anhydrase, 25 kDa isoform] Length = 328 Score = 147 bits (370), Expect = 2e-35 Identities = 72/111 (64%), Positives = 83/111 (74%) Frame = +3 Query: 123 AVERLKTGFEKFKTEVYDKKPDFFEPLKAGQAPKYMVFACADSRVCPSVTLGLEPGEAFT 302 A ER+KTGF FK E YDK P + L GQ+P +MVFAC+DSRVCPS L +PGEAF Sbjct: 120 ASERIKTGFLHFKKEKYDKNPALYGELAKGQSPPFMVFACSDSRVCPSHVLDFQPGEAFV 179 Query: 303 IRNIANMVPAYCKNKYAGVGSAIEYAVCALKVEVIVVIGHSRCGGIKALLS 455 +RN+AN+VP Y + KYAG G+AIEYAV LKV IVVIGHS CGGIK LLS Sbjct: 180 VRNVANLVPPYDQAKYAGTGAAIEYAVLHLKVSNIVVIGHSACGGIKGLLS 230
>CAHC_ARATH (P27140) Carbonic anhydrase, chloroplast precursor (EC 4.2.1.1)| (Carbonate dehydratase) Length = 347 Score = 146 bits (369), Expect = 2e-35 Identities = 72/110 (65%), Positives = 83/110 (75%) Frame = +3 Query: 126 VERLKTGFEKFKTEVYDKKPDFFEPLKAGQAPKYMVFACADSRVCPSVTLGLEPGEAFTI 305 VE +K GF KFK E Y+ P + L GQ+PKYMVFAC+DSRVCPS L +PG+AF + Sbjct: 129 VETIKQGFIKFKKEKYETNPALYGELAKGQSPKYMVFACSDSRVCPSHVLDFQPGDAFVV 188 Query: 306 RNIANMVPAYCKNKYAGVGSAIEYAVCALKVEVIVVIGHSRCGGIKALLS 455 RNIANMVP + K KY GVG+AIEYAV LKVE IVVIGHS CGGIK L+S Sbjct: 189 RNIANMVPPFDKVKYGGVGAAIEYAVLHLKVENIVVIGHSACGGIKGLMS 238
>CAH2_FLALI (P46513) Carbonic anhydrase 2 (EC 4.2.1.1) (Carbonate dehydratase| 2) (Fragment) Length = 190 Score = 122 bits (306), Expect = 4e-28 Identities = 59/92 (64%), Positives = 71/92 (77%) Frame = +3 Query: 183 PDFFEPLKAGQAPKYMVFACADSRVCPSVTLGLEPGEAFTIRNIANMVPAYCKNKYAGVG 362 P + L GQ+PK++VFAC+DSRVCPS L +PGEAF +RNIANMVP Y K++G G Sbjct: 2 PTLYGELAKGQSPKFLVFACSDSRVCPSHILDFQPGEAFVVRNIANMVPPYDTIKHSGAG 61 Query: 363 SAIEYAVCALKVEVIVVIGHSRCGGIKALLSL 458 +AIEYAV LKVE IVVIGHS CGGIK L+S+ Sbjct: 62 AAIEYAVLHLKVENIVVIGHSCCGGIKGLMSI 93
>CYNT_SYNY3 (Q54735) Carbonic anhydrase (EC 4.2.1.1)| Length = 274 Score = 92.4 bits (228), Expect = 5e-19 Identities = 46/111 (41%), Positives = 66/111 (59%) Frame = +3 Query: 126 VERLKTGFEKFKTEVYDKKPDFFEPLKAGQAPKYMVFACADSRVCPSVTLGLEPGEAFTI 305 ++RL G +KF+ + D FE L GQ P+ + C+DSRV P++ E G+ F I Sbjct: 1 MQRLIEGLQKFREGYFSSHRDLFEQLSHGQHPRILFICCSDSRVDPNLITQSEVGDLFVI 60 Query: 306 RNIANMVPAYCKNKYAGVGSAIEYAVCALKVEVIVVIGHSRCGGIKALLSL 458 RN N++P Y G G+A+EYA+ AL++ I+V GHS CG +K LL L Sbjct: 61 RNAGNIIPPYGAAN-GGEGAAMEYALVALEINQIIVCGHSHCGAMKGLLKL 110
>CYNT_ECOLI (P0ABE9) Carbonic anhydrase 1 (EC 4.2.1.1)| Length = 219 Score = 92.0 bits (227), Expect = 6e-19 Identities = 44/104 (42%), Positives = 65/104 (62%) Frame = +3 Query: 144 GFEKFKTEVYDKKPDFFEPLKAGQAPKYMVFACADSRVCPSVTLGLEPGEAFTIRNIANM 323 GF KF+ E + K+ F+ L Q+P+ + +C+DSR+ P + EPG+ F IRN N+ Sbjct: 7 GFLKFQREAFPKREALFKQLATQQSPRTLFISCSDSRLVPELVTQREPGDLFVIRNAGNI 66 Query: 324 VPAYCKNKYAGVGSAIEYAVCALKVEVIVVIGHSRCGGIKALLS 455 VP+Y GV +++EYAV AL+V IV+ GHS CG + A+ S Sbjct: 67 VPSYGPEP-GGVSASVEYAVAALRVSDIVICGHSNCGAMTAIAS 109
>CYNT_ECO57 (P0ABF0) Carbonic anhydrase 1 (EC 4.2.1.1)| Length = 219 Score = 92.0 bits (227), Expect = 6e-19 Identities = 44/104 (42%), Positives = 65/104 (62%) Frame = +3 Query: 144 GFEKFKTEVYDKKPDFFEPLKAGQAPKYMVFACADSRVCPSVTLGLEPGEAFTIRNIANM 323 GF KF+ E + K+ F+ L Q+P+ + +C+DSR+ P + EPG+ F IRN N+ Sbjct: 7 GFLKFQREAFPKREALFKQLATQQSPRTLFISCSDSRLVPELVTQREPGDLFVIRNAGNI 66 Query: 324 VPAYCKNKYAGVGSAIEYAVCALKVEVIVVIGHSRCGGIKALLS 455 VP+Y GV +++EYAV AL+V IV+ GHS CG + A+ S Sbjct: 67 VPSYGPEP-GGVSASVEYAVAALRVSDIVICGHSNCGAMTAIAS 109
>CYNT_SYNP7 (P27134) Carbonic anhydrase (EC 4.2.1.1)| Length = 272 Score = 89.4 bits (220), Expect = 4e-18 Identities = 44/111 (39%), Positives = 62/111 (55%) Frame = +3 Query: 126 VERLKTGFEKFKTEVYDKKPDFFEPLKAGQAPKYMVFACADSRVCPSVTLGLEPGEAFTI 305 + +L G F+T Y D FE GQ P+ + C+DSR+ P++ GE F I Sbjct: 1 MRKLIEGLRHFRTSYYPSHRDLFEQFAKGQHPRVLFITCSDSRIDPNLITQSGMGELFVI 60 Query: 306 RNIANMVPAYCKNKYAGVGSAIEYAVCALKVEVIVVIGHSRCGGIKALLSL 458 RN N++P + G G++IEYA+ AL +E +VV GHS CG +K LL L Sbjct: 61 RNAGNLIPPFGAAN-GGEGASIEYAIAALNIEHVVVCGHSHCGAMKGLLKL 110
>CAN_SHIFL (P61518) Carbonic anhydrase 2 (EC 4.2.1.1)| Length = 220 Score = 74.3 bits (181), Expect = 1e-13 Identities = 39/91 (42%), Positives = 54/91 (59%) Frame = +3 Query: 174 DKKPDFFEPLKAGQAPKYMVFACADSRVCPSVTLGLEPGEAFTIRNIANMVPAYCKNKYA 353 ++ P FFE L Q P+++ C+DSRV GLEPGE F RN+AN+V N Sbjct: 20 EEDPGFFEKLAQAQKPRFLWIGCSDSRVPAERLTGLEPGELFVHRNVANLVIHTDLNCL- 78 Query: 354 GVGSAIEYAVCALKVEVIVVIGHSRCGGIKA 446 S ++YAV L+VE I++ GH CGG++A Sbjct: 79 ---SVVQYAVDVLEVEHIIICGHYGCGGVQA 106
>CAN_ECOLI (P61517) Carbonic anhydrase 2 (EC 4.2.1.1)| Length = 220 Score = 74.3 bits (181), Expect = 1e-13 Identities = 39/91 (42%), Positives = 54/91 (59%) Frame = +3 Query: 174 DKKPDFFEPLKAGQAPKYMVFACADSRVCPSVTLGLEPGEAFTIRNIANMVPAYCKNKYA 353 ++ P FFE L Q P+++ C+DSRV GLEPGE F RN+AN+V N Sbjct: 20 EEDPGFFEKLAQAQKPRFLWIGCSDSRVPAERLTGLEPGELFVHRNVANLVIHTDLNCL- 78 Query: 354 GVGSAIEYAVCALKVEVIVVIGHSRCGGIKA 446 S ++YAV L+VE I++ GH CGG++A Sbjct: 79 ---SVVQYAVDVLEVEHIIICGHYGCGGVQA 106
>CYNT_HELPJ (Q9ZN54) Carbonic anhydrase (EC 4.2.1.1)| Length = 221 Score = 72.4 bits (176), Expect = 5e-13 Identities = 33/98 (33%), Positives = 58/98 (59%), Gaps = 1/98 (1%) Frame = +3 Query: 144 GFEKFKTEVYDKKPDFFEPLKAGQAPKYMVFACADSRVCPSVTLGLEPGEAFTIRNIANM 323 G +F+ Y++ + +E LK Q P + +C DSRV P++ G +PGE + IRN+ N+ Sbjct: 6 GALEFQENEYEEFKELYESLKTKQKPHTLFISCVDSRVVPNLITGTQPGELYVIRNMGNV 65 Query: 324 VPAYCKNKYA-GVGSAIEYAVCALKVEVIVVIGHSRCG 434 +P K + +++EYA+ + V+ +++ GHS CG Sbjct: 66 IPPKTSYKESLSTIASVEYAIAHVGVQNLIICGHSDCG 103
>CAN_HAEIN (P45148) Carbonic anhydrase 2 (EC 4.2.1.1)| Length = 229 Score = 68.9 bits (167), Expect = 6e-12 Identities = 37/94 (39%), Positives = 52/94 (55%) Frame = +3 Query: 174 DKKPDFFEPLKAGQAPKYMVFACADSRVCPSVTLGLEPGEAFTIRNIANMVPAYCKNKYA 353 ++ +F+ L Q P Y+ C+DSRV LEPGE F RN+AN V N Sbjct: 20 EENSTYFKELADHQTPHYLWIGCSDSRVPAEKLTNLEPGELFVHRNVANQVIHTDFNCL- 78 Query: 354 GVGSAIEYAVCALKVEVIVVIGHSRCGGIKALLS 455 S ++YAV LK+E I++ GH+ CGGI A ++ Sbjct: 79 ---SVVQYAVDVLKIEHIIICGHTNCGGIHAAMA 109
>CYNT_HELPY (O24855) Carbonic anhydrase 1 (EC 4.2.1.1)| Length = 221 Score = 67.4 bits (163), Expect = 2e-11 Identities = 33/98 (33%), Positives = 56/98 (57%), Gaps = 1/98 (1%) Frame = +3 Query: 144 GFEKFKTEVYDKKPDFFEPLKAGQAPKYMVFACADSRVCPSVTLGLEPGEAFTIRNIANM 323 G +F+ Y++ + +E LK Q P + +C DSRV P++ G +PGE + I N+ N+ Sbjct: 6 GALEFQENEYEELKELYESLKTKQKPHTLFISCVDSRVVPNLITGTKPGELYVICNMGNV 65 Query: 324 VPAYCKNKYA-GVGSAIEYAVCALKVEVIVVIGHSRCG 434 P K + ++IEYA+ + V+ +++ GHS CG Sbjct: 66 NPPKTSYKESLSTIASIEYAIAHVGVQNLIICGHSDCG 103
>NCE3_YEAST (P53615) Non-classical export protein 3| Length = 221 Score = 65.1 bits (157), Expect = 8e-11 Identities = 35/102 (34%), Positives = 61/102 (59%), Gaps = 1/102 (0%) Frame = +3 Query: 153 KFKTEVYDKKPDFFEPLKA-GQAPKYMVFACADSRVCPSVTLGLEPGEAFTIRNIANMVP 329 K+ +++ + +P F A GQ+P + C+DSR + LG+ PGE FT +N+AN+ Sbjct: 27 KWASQMNNIQPTLFPDHNAKGQSPHTLFIGCSDSRYNENC-LGVLPGEVFTWKNVANI-- 83 Query: 330 AYCKNKYAGVGSAIEYAVCALKVEVIVVIGHSRCGGIKALLS 455 C ++ + + +E+A+ LKV +++ GH+ CGGIK L+ Sbjct: 84 --CHSEDLTLKATLEFAIICLKVNKVIICGHTDCGGIKTCLT 123
>GLMM_PSEAE (Q9HV50) Phosphoglucosamine mutase (EC 5.4.2.10)| Length = 445 Score = 33.1 bits (74), Expect = 0.36 Identities = 22/57 (38%), Positives = 28/57 (49%) Frame = -1 Query: 443 LDSTAAAVANHHDDLNLERADGVFDGRSNTGVLVLAVGRDHVGDVADGEGLTGLKAQ 273 LD AAV HH DL + FDG + ++V DH G V DG+ L L A+ Sbjct: 221 LDGLQAAVVEHHADLGI-----AFDGDGDRVMMV-----DHTGAVVDGDELLFLIAR 267
>NFM_BOVIN (O77788) Neurofilament triplet M protein (160 kDa neurofilament| protein) (Neurofilament medium polypeptide) (NF-M) Length = 925 Score = 30.8 bits (68), Expect = 1.8 Identities = 17/36 (47%), Positives = 21/36 (58%) Frame = +1 Query: 265 RSPWALSPVRPSPSATSPTWSRPTARTSTPVLDRPS 372 +SP A SP SP A SPT PTA+ +PV P+ Sbjct: 628 KSPTAKSPEAKSPEAKSPTAKSPTAK--SPVAKSPT 661 Score = 30.0 bits (66), Expect = 3.0 Identities = 14/30 (46%), Positives = 18/30 (60%) Frame = +1 Query: 265 RSPWALSPVRPSPSATSPTWSRPTARTSTP 354 +SP A SP SP+A SPT P A++ P Sbjct: 663 KSPEAKSPEAKSPTAKSPTAKSPAAKSPAP 692 Score = 29.6 bits (65), Expect = 3.9 Identities = 14/27 (51%), Positives = 17/27 (62%) Frame = +1 Query: 265 RSPWALSPVRPSPSATSPTWSRPTART 345 +SP A SP SP A SPT PTA++ Sbjct: 658 KSPTAKSPEAKSPEAKSPTAKSPTAKS 684 Score = 29.6 bits (65), Expect = 3.9 Identities = 15/35 (42%), Positives = 20/35 (57%) Frame = +1 Query: 247 TRVCARRSPWALSPVRPSPSATSPTWSRPTARTST 351 T+ +SP A SP SP+A SPT P A++ T Sbjct: 627 TKSPTAKSPEAKSPEAKSPTAKSPTAKSPVAKSPT 661 Score = 29.3 bits (64), Expect = 5.1 Identities = 14/29 (48%), Positives = 17/29 (58%) Frame = +1 Query: 265 RSPWALSPVRPSPSATSPTWSRPTARTST 351 +SP A SP SP A SP PTA++ T Sbjct: 653 KSPVAKSPTAKSPEAKSPEAKSPTAKSPT 681 Score = 29.3 bits (64), Expect = 5.1 Identities = 14/29 (48%), Positives = 18/29 (62%) Frame = +1 Query: 265 RSPWALSPVRPSPSATSPTWSRPTARTST 351 +SP A SPV SP+A SP P A++ T Sbjct: 648 KSPTAKSPVAKSPTAKSPEAKSPEAKSPT 676 Score = 28.5 bits (62), Expect = 8.7 Identities = 13/27 (48%), Positives = 17/27 (62%) Frame = +1 Query: 265 RSPWALSPVRPSPSATSPTWSRPTART 345 +SP A SP SP+A SP PTA++ Sbjct: 638 KSPEAKSPTAKSPTAKSPVAKSPTAKS 664
>IF2_BRUME (Q8YEB3) Translation initiation factor IF-2| Length = 959 Score = 30.4 bits (67), Expect = 2.3 Identities = 18/54 (33%), Positives = 26/54 (48%) Frame = +2 Query: 92 TSSTLQQDGRRRGAPQDRVREVQDRGLRQEARFLRAAQGRPGAQVHGVRVRRLA 253 T S + D RRR + ++REV++R E RA + A+ H RR A Sbjct: 150 TLSRSEMDARRRALEEAQIREVEERARAVEEAKRRAEEDARRAKEHEESARRQA 203
>RPOS_YEREN (P47765) RNA polymerase sigma factor rpoS| Length = 331 Score = 30.4 bits (67), Expect = 2.3 Identities = 14/35 (40%), Positives = 23/35 (65%) Frame = +2 Query: 95 SSTLQQDGRRRGAPQDRVREVQDRGLRQEARFLRA 199 ++TL+ GR G ++RVR++Q GLR+ L+A Sbjct: 286 AATLEDVGREIGLTRERVRQIQVEGLRRLREILQA 320
>Y1315_MYCBO (P64798) Hypothetical protein Mb1315| Length = 163 Score = 30.0 bits (66), Expect = 3.0 Identities = 23/87 (26%), Positives = 37/87 (42%) Frame = +3 Query: 174 DKKPDFFEPLKAGQAPKYMVFACADSRVCPSVTLGLEPGEAFTIRNIANMVPAYCKNKYA 353 D F PL + + AC D+R+ LG++ GEA IRN +V Sbjct: 13 DYASGFKGPLPMPPSKHIAIVACMDARLDVYRMLGIKEGEAHVIRNAGCVVT-------D 65 Query: 354 GVGSAIEYAVCALKVEVIVVIGHSRCG 434 V ++ + L I+++ H+ CG Sbjct: 66 DVIRSLAISQRLLGTREIILLHHTDCG 92
>Y1284_MYCTU (P64797) Hypothetical protein Rv1284/MT1322| Length = 163 Score = 30.0 bits (66), Expect = 3.0 Identities = 23/87 (26%), Positives = 37/87 (42%) Frame = +3 Query: 174 DKKPDFFEPLKAGQAPKYMVFACADSRVCPSVTLGLEPGEAFTIRNIANMVPAYCKNKYA 353 D F PL + + AC D+R+ LG++ GEA IRN +V Sbjct: 13 DYASGFKGPLPMPPSKHIAIVACMDARLDVYRMLGIKEGEAHVIRNAGCVVT-------D 65 Query: 354 GVGSAIEYAVCALKVEVIVVIGHSRCG 434 V ++ + L I+++ H+ CG Sbjct: 66 DVIRSLAISQRLLGTREIILLHHTDCG 92
>VGP3_EBV (P03200) Envelope glycoprotein GP340/GP220 (Membrane antigen) (MA)| Length = 907 Score = 29.6 bits (65), Expect = 3.9 Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 6/52 (11%) Frame = +1 Query: 241 APTRVCARRSPWALSPV----RPSPSATSPTWSR--PTARTSTPVLDRPSNT 378 +PT +P A SP P+P+ATSPT + PT+ +TP + S T Sbjct: 522 SPTPAVTTPTPNATSPTPAVTTPTPNATSPTLGKTSPTSAVTTPTPNATSPT 573
>IF2_COREF (Q8FPA7) Translation initiation factor IF-2| Length = 964 Score = 29.3 bits (64), Expect = 5.1 Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 1/45 (2%) Frame = +1 Query: 241 APTRVCARRSPWALSPVRPSPSATSPTWSRPTA-RTSTPVLDRPS 372 AP A P P P P+A P ++PTA + +TP P+ Sbjct: 97 APKPGTAAAKPTPAKPAAPKPTAAKPAPAKPTAPKPATPAFSGPT 141
>ZO2_HUMAN (Q9UDY2) Tight junction protein ZO-2 (Zonula occludens 2 protein)| (Zona occludens 2 protein) (Tight junction protein 2) Length = 1190 Score = 29.3 bits (64), Expect = 5.1 Identities = 13/38 (34%), Positives = 19/38 (50%) Frame = +1 Query: 244 PTRVCARRSPWALSPVRPSPSATSPTWSRPTARTSTPV 357 P+ V +P A + P P A PT+ R + STP+ Sbjct: 1019 PSAVAGNETPGASTKGYPPPVAAKPTFGRSILKPSTPI 1056
>YA28_SCHPO (Q09699) Hypothetical protein C2F7.08c in chromosome I| Length = 632 Score = 29.3 bits (64), Expect = 5.1 Identities = 18/44 (40%), Positives = 23/44 (52%) Frame = +2 Query: 140 DRVREVQDRGLRQEARFLRAAQGRPGAQVHGVRVRRLACVPVGH 271 D E QDRG +EAR +R QGR HG+ + L +P H Sbjct: 366 DAEMERQDRGYDREARRMRRRQGR---AKHGIMLPDLRDIPKIH 406
>RPOS_SHIFL (P35540) RNA polymerase sigma factor rpoS| Length = 330 Score = 28.9 bits (63), Expect = 6.7 Identities = 13/34 (38%), Positives = 22/34 (64%) Frame = +2 Query: 95 SSTLQQDGRRRGAPQDRVREVQDRGLRQEARFLR 196 ++TL+ GR G ++RVR++Q GLR+ L+ Sbjct: 285 AATLEDVGREIGLTRERVRQIQVEGLRRLREILQ 318
>RPOS_SALTY (P0A2E5) RNA polymerase sigma factor rpoS (Sigma-38)| Length = 330 Score = 28.9 bits (63), Expect = 6.7 Identities = 13/34 (38%), Positives = 22/34 (64%) Frame = +2 Query: 95 SSTLQQDGRRRGAPQDRVREVQDRGLRQEARFLR 196 ++TL+ GR G ++RVR++Q GLR+ L+ Sbjct: 285 AATLEDVGREIGLTRERVRQIQVEGLRRLREILQ 318
>RPOS_SALTI (P0A2E6) RNA polymerase sigma factor rpoS (Sigma-38)| Length = 330 Score = 28.9 bits (63), Expect = 6.7 Identities = 13/34 (38%), Positives = 22/34 (64%) Frame = +2 Query: 95 SSTLQQDGRRRGAPQDRVREVQDRGLRQEARFLR 196 ++TL+ GR G ++RVR++Q GLR+ L+ Sbjct: 285 AATLEDVGREIGLTRERVRQIQVEGLRRLREILQ 318
>RPOS_SALDU (P0A2E7) RNA polymerase sigma factor rpoS (Sigma-38)| Length = 330 Score = 28.9 bits (63), Expect = 6.7 Identities = 13/34 (38%), Positives = 22/34 (64%) Frame = +2 Query: 95 SSTLQQDGRRRGAPQDRVREVQDRGLRQEARFLR 196 ++TL+ GR G ++RVR++Q GLR+ L+ Sbjct: 285 AATLEDVGREIGLTRERVRQIQVEGLRRLREILQ 318
>RPOS_ECOLI (P13445) RNA polymerase sigma factor rpoS (Sigma-38)| Length = 330 Score = 28.9 bits (63), Expect = 6.7 Identities = 13/34 (38%), Positives = 22/34 (64%) Frame = +2 Query: 95 SSTLQQDGRRRGAPQDRVREVQDRGLRQEARFLR 196 ++TL+ GR G ++RVR++Q GLR+ L+ Sbjct: 285 AATLEDVGREIGLTRERVRQIQVEGLRRLREILQ 318
>Y414_ARCFU (O29833) Hypothetical protein AF0414| Length = 144 Score = 28.9 bits (63), Expect = 6.7 Identities = 18/87 (20%), Positives = 37/87 (42%) Frame = +3 Query: 177 KKPDFFEPLKAGQAPKYMVFACADSRVCPSVTLGLEPGEAFTIRNIANMVPAYCKNKYAG 356 KKPDF EP+K P+ V + S+TL + ++ + Y K+++ Sbjct: 15 KKPDFVEPVKPVDKPEIAVKKAPLRELAASITLSALSAKKLIDMELSKIRKEYEKDEFLR 74 Query: 357 VGSAIEYAVCALKVEVIVVIGHSRCGG 437 + + +++E+ + + GG Sbjct: 75 NFPLPGFEISEMELELNFAVDEVKDGG 101
>SGS3_DROME (P02840) Salivary glue protein Sgs-3 precursor| Length = 307 Score = 28.9 bits (63), Expect = 6.7 Identities = 14/49 (28%), Positives = 21/49 (42%) Frame = +1 Query: 232 CSRAPTRVCARRSPWALSPVRPSPSATSPTWSRPTARTSTPVLDRPSNT 378 C+ T P P P+ T PT ++PT T+ P +P+ T Sbjct: 140 CTTPTTTKPTTTKPTTTKPTTTKPTTTKPTTTKPT--TTKPTTTKPTTT 186
>SYA_RHIME (P27866) Alanyl-tRNA synthetase (EC 6.1.1.7) (Alanine--tRNA ligase)| (AlaRS) Length = 887 Score = 28.5 bits (62), Expect = 8.7 Identities = 13/22 (59%), Positives = 16/22 (72%) Frame = -1 Query: 311 VADGEGLTGLKAQGDRRAHTRV 246 +A E TG+KA+GDRRA RV Sbjct: 254 IAASEEATGVKAEGDRRASHRV 275
>EFG_NITOC (Q3J8R1) Elongation factor G (EF-G)| Length = 697 Score = 28.5 bits (62), Expect = 8.7 Identities = 13/28 (46%), Positives = 17/28 (60%) Frame = +2 Query: 128 GAPQDRVREVQDRGLRQEARFLRAAQGR 211 GAPQ RE R + QE +F+R + GR Sbjct: 482 GAPQVAYRETIRRSIEQEGKFVRQSGGR 509 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.316 0.126 0.432 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 58,203,967 Number of Sequences: 219361 Number of extensions: 1166428 Number of successful extensions: 4903 Number of sequences better than 10.0: 40 Number of HSP's better than 10.0 without gapping: 4381 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4844 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2968155324 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
