>IF2_BIFLO (Q8G3Y5) Translation initiation factor IF-2|
          Length = 954

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 24/77 (31%), Positives = 28/77 (36%), Gaps = 3/77 (3%)
 Frame = +3

Query: 45  GTMPAPR-R*ERPRDGR-AIPRVRGLRLPRGHRIPRVPXXXXXXXXXXXGGHPDRPA-GA 215
           G   APR   + PR G     R +G+  P    IPR             GG P RP  G 
Sbjct: 175 GNASAPRPHAQGPRPGNNPFSRKQGMHTPTPGDIPRPHPMARPTADNGRGGRPGRPGQGQ 234

Query: 216 PRGRAVLAGARADGEHG 266
            +GR    G    G  G
Sbjct: 235 GQGRGFRGGRPGQGGQG 251

>SHP_RAT (P97947) Nuclear receptor 0B2 (Orphan nuclear receptor SHP) (Small|
           heterodimer partner)
          Length = 260

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 12/20 (60%), Positives = 16/20 (80%)
 Frame = -3

Query: 266 SVLSVGPRSRQYSPASRSSC 207
           ++LS GPR+R  +PASRS C
Sbjct: 23  TLLSPGPRTRPMAPASRSHC 42

>KHSE_LISMO (Q8Y4A6) Homoserine kinase (EC 2.7.1.39) (HSK) (HK)|
          Length = 288

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 16/34 (47%), Positives = 19/34 (55%)
 Frame = +3

Query: 189 GHPDRPAGAPRGRAVLAGARADGEHGVLLHPLPD 290
           GHPD  A A  G  V+ GA+ DGE   + H  PD
Sbjct: 120 GHPDNVAPAVLGNWVV-GAKLDGEDFYVRHLFPD 152

>KHSE_LISMF (Q71WN3) Homoserine kinase (EC 2.7.1.39) (HSK) (HK)|
          Length = 288

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 16/34 (47%), Positives = 19/34 (55%)
 Frame = +3

Query: 189 GHPDRPAGAPRGRAVLAGARADGEHGVLLHPLPD 290
           GHPD  A A  G  V+ GA+ DGE   + H  PD
Sbjct: 120 GHPDNVAPAVLGNWVV-GAKLDGEDFYVRHLFPD 152

>KHSE_LISIN (Q927U8) Homoserine kinase (EC 2.7.1.39) (HSK) (HK)|
          Length = 288

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 16/34 (47%), Positives = 19/34 (55%)
 Frame = +3

Query: 189 GHPDRPAGAPRGRAVLAGARADGEHGVLLHPLPD 290
           GHPD  A A  G  V+ GA+ DGE   + H  PD
Sbjct: 120 GHPDNVAPAVLGNWVV-GAKLDGEDFYVRHLFPD 152

>GUDP_ECOLI (Q46916) Probable glucarate transporter (D-glucarate permease)|
          Length = 450

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = -2

Query: 141 VCDVLAGVVAHVHAEWLCRRVGALS 67
           VC  + GV+  + ++WL RR G+L+
Sbjct: 299 VCGFIGGVLGGIISDWLMRRTGSLN 323

>ZDH12_RAT (Q6DGF5) Probable palmitoyltransferase ZDHHC12 (EC 2.3.1.-) (Zinc|
           finger DHHC domain-containing protein 12) (DHHC-12)
          Length = 267

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 14/44 (31%), Positives = 19/44 (43%)
 Frame = +2

Query: 2   TSYPVTRPRRKCRLRHHASSSALRAPTRRQSHSACTWATTPART 133
           T++      R   LR   S+   R PTR  +H  C W + P  T
Sbjct: 210 TTWEFISSHRIAYLRQRTSNPFDRGPTRNLAHFFCGWPSGPWET 253

>ZDH12_MOUSE (Q8VC90) Probable palmitoyltransferase ZDHHC12 (EC 2.3.1.-) (Zinc|
           finger DHHC domain-containing protein 12) (DHHC-12)
          Length = 267

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 14/44 (31%), Positives = 19/44 (43%)
 Frame = +2

Query: 2   TSYPVTRPRRKCRLRHHASSSALRAPTRRQSHSACTWATTPART 133
           T++      R   LR   S+   R PTR  +H  C W + P  T
Sbjct: 210 TTWEFISSHRIAYLRQRTSNPFDRGPTRNLAHFFCGWPSGPWET 253

>FUSC3_FUSCU (Q8J1X7) Allergen Fus c 3|
          Length = 450

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 19/52 (36%), Positives = 24/52 (46%), Gaps = 9/52 (17%)
 Frame = +2

Query: 11  PVTRPRRKCRLRHH---------ASSSALRAPTRRQSHSACTWATTPARTSH 139
           PVTRPR+  R R           AS  A  + T   +HS    A +P+ TSH
Sbjct: 269 PVTRPRKPARARRQKKEPRKLSDASQGARSSSTGGTAHSVSD-AASPSSTSH 319

>NNP1_HUMAN (P56182) NNP-1 protein (Novel nuclear protein 1) (Nucleolar protein|
           Nop52) (D21S2056E)
          Length = 461

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = -1

Query: 127 RGSRSPRTRGMALPSRGRSQRRGAGMVPEATFSA 26
           +G + P + GM    R RS+RRG G  PEA   A
Sbjct: 376 KGEKEPPSPGM---ERKRSRRRGVGADPEARAEA 406

>PCDB9_HUMAN (Q9Y5E1) Protocadherin beta 9 precursor (PCDH-beta9) (Protocadherin|
           3H)
          Length = 797

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +1

Query: 247 GPTESTEFSFTRFLTPHLAGYRG 315
           G +E+ EF F + +TPHL  +RG
Sbjct: 757 GGSETGEFKFLKPITPHLPPHRG 779


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,674,361
Number of Sequences: 219361
Number of extensions: 632836
Number of successful extensions: 2442
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 2346
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2434
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 1365190992
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)