ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baet101g08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1STC_DROME (P40798) Protein shuttle craft 29 3.0
2CAC1G_RAT (O54898) Voltage-dependent T-type calcium channel alph... 28 8.6
3RIR1_HHV11 (P08543) Ribonucleoside-diphosphate reductase large c... 28 8.6

>STC_DROME (P40798) Protein shuttle craft|
          Length = 1106

 Score = 29.3 bits (64), Expect = 3.0
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +3

Query: 126 HPGSTPPSPRASGACCRCRH 185
           H G  PP P+ +G  CRC H
Sbjct: 658 HLGQCPPCPKQTGVKCRCGH 677



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>CAC1G_RAT (O54898) Voltage-dependent T-type calcium channel alpha-1G subunit|
           (Voltage-gated calcium channel alpha subunit Cav3.1)
          Length = 2254

 Score = 27.7 bits (60), Expect = 8.6
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = -3

Query: 196 RERGCRQRQQAPEARGEGGVEPGC 125
           RE G R  +  P  RGEGG  P C
Sbjct: 275 RENGMRSCRSVPTLRGEGGGGPPC 298



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>RIR1_HHV11 (P08543) Ribonucleoside-diphosphate reductase large chain (EC|
           1.17.4.1) (Ribonucleotide reductase) (136 kDa subunit)
          Length = 1137

 Score = 27.7 bits (60), Expect = 8.6
 Identities = 12/24 (50%), Positives = 13/24 (54%), Gaps = 2/24 (8%)
 Frame = +3

Query: 132 GSTPPSPRAS--GACCRCRHPRSR 197
           G  PP PR +  G CC CR  R R
Sbjct: 148 GGPPPPPRFTLGGGCCSCRDTRRR 171


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.313    0.129    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,625,298
Number of Sequences: 219361
Number of extensions: 206798
Number of successful extensions: 411
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 409
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 411
length of database: 80,573,946
effective HSP length: 42
effective length of database: 71,360,784
effective search space used: 1712658816
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
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