Clone Information

BLAST Search Result

Clone Name	baet101g04
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	ref\|XM_466935.1\| Oryza sativa (japonica cultivar-group), mRNA	369	5e-99
2	dbj\|AP008208.1\| Oryza sativa (japonica cultivar-group) genomic D...	369	5e-99
3	dbj\|AP005513.3\| Oryza sativa (japonica cultivar-group) genomic D...	369	5e-99
4	dbj\|AP004067.3\| Oryza sativa (japonica cultivar-group) genomic D...	369	5e-99
5	dbj\|AK100670.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	369	5e-99
6	gb\|DP000009.1\| Oryza sativa (japonica cultivar-group) chromosome 3	347	2e-92
7	dbj\|AP008209.1\| Oryza sativa (japonica cultivar-group) genomic D...	347	2e-92
8	gb\|AC140006.1\| Oryza sativa (japonica cultivar-group) chromosome...	347	2e-92
9	gb\|AC104474.2\| Oryza sativa (japonica cultivar-group) chromosome...	347	2e-92
10	dbj\|AK071610.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	347	2e-92
11	ref\|NM_188251.1\| Oryza sativa (japonica cultivar-group), predic...	44	0.36
12	dbj\|AP008207.1\| Oryza sativa (japonica cultivar-group) genomic D...	44	0.36
13	dbj\|AP003244.3\| Oryza sativa (japonica cultivar-group) genomic D...	44	0.36
14	emb\|AL139294.15\| Human DNA sequence from clone RP5-1044H5 on chr...	42	1.4
15	gb\|AC105091.3\| Homo sapiens chromosome 8, clone RP11-479P21, com...	42	1.4
16	gb\|AC099016.1\| Drosophila melanogaster, chromosome 2R, region 56...	42	1.4
17	gb\|AE003797.3\| Drosophila melanogaster chromosome 2R, section 53...	42	1.4
18	gb\|AC004298.1\|AC004298 Drosophila melanogaster DNA sequence (P1 ...	42	1.4
19	ref\|XM_472924.1\| Oryza sativa (japonica cultivar-group), predic...	40	5.6
20	ref\|XM_423552.1\| PREDICTED: Gallus gallus similar to Myeloid/lym...	40	5.6
21	gb\|AC131110.3\| Mus musculus BAC clone RP23-387J23 from chromosom...	40	5.6
22	gb\|AC164156.2\| Mus musculus BAC clone RP24-549I8 from chromosome...	40	5.6
23	gb\|AC124497.3\| Mus musculus BAC clone RP23-480E8 from chromosome...	40	5.6
24	gb\|AC124534.4\| Mus musculus BAC clone RP23-316G7 from chromosome...	40	5.6
25	emb\|AL590362.12\| Human DNA sequence from clone RP11-214G2 on chr...	40	5.6
26	emb\|AL353804.22\| Human DNA sequence from clone RP13-216E22 on ch...	40	5.6
27	emb\|AL935254.1\| Lactobacillus plantarum strain WCFS1 complete ge...	40	5.6
28	emb\|AL606614.3\|OSJN00047 Oryza sativa genomic DNA, chromosome 4,...	40	5.6
29	emb\|CR536621.7\| Zebrafish DNA sequence from clone CH211-158M1, c...	40	5.6
30	emb\|CR388098.7\| Zebrafish DNA sequence from clone DKEY-12J14 in ...	40	5.6
31	emb\|CR749383.1\| Homo sapiens mRNA; cDNA DKFZp779P0129 (from clon...	40	5.6
32	gb\|M97168.1\|HUMXIST Homo sapiens X (inactive)-specific transcrip...	40	5.6
33	ref\|NR_001564.1\| Homo sapiens X (inactive)-specific transcript (...	40	5.6
34	dbj\|AP008210.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	5.6
35	emb\|BX072573.5\| Zebrafish DNA sequence from clone DKEY-16I6, com...	40	5.6
36	dbj\|AK025198.1\| Homo sapiens cDNA: FLJ21545 fis, clone COL06195	40	5.6
37	dbj\|AK068497.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	40	5.6
38	gb\|AC123827.4\| Mus musculus BAC clone RP24-100N12 from 5, comple...	40	5.6
39	gb\|AC110621.6\| Mus musculus BAC clone RP23-157I3 from 7, complet...	40	5.6
40	gb\|AC135109.5\| Mus musculus BAC clone RP23-180O9 from 7, complet...	40	5.6
41	gb\|AC140253.3\| Mus musculus BAC clone RP23-298L2 from 3, complet...	40	5.6

>ref|XM_466935.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2196

 Score =  369 bits (186), Expect = 5e-99
 Identities = 351/406 (86%)
 Strand = Plus / Plus

                                                                        
Query: 12   ttgaagagctcggtctgccacctttgctcattgaccggctgaacaaggaaggcctaacct 71
            ||||||| |||||| ||||||||||||| || ||  || ||||||||||||| || ||  
Sbjct: 617  ttgaagaactcggtttgccacctttgcttatagataggttgaacaaggaaggtcttactg 676

                                                                        
Query: 72   ctccaactgaggtccaatctgcttctattcctgtcatatctcaaaggcatgatgcggtta 131
            |||||||||||||||| |||||| |||||||| |||| || |||| ||| ||||| ||||
Sbjct: 677  ctccaactgaggtccagtctgctgctattcctatcatttcacaaaagcacgatgcagtta 736

                                                                        
Query: 132  ttcaatcatatacagggtcagggaaaacacttgcgtaccttctccctattctttctgaaa 191
            | ||||||||||| || |||||||| |||||||| || ||||||||||||||||||||||
Sbjct: 737  tccaatcatatactggctcagggaagacacttgcttatcttctccctattctttctgaaa 796

                                                                        
Query: 192  taggacccctgaagagggctagagagcagggtaattctgagaagagatcaggtatagaag 251
            |||| || ||||||||| ||| ||| || |  | |||||| |||||||||||| |||| |
Sbjct: 797  taggccctctgaagaggcctacagaacaagacagttctgataagagatcaggtgtagagg 856

                                                                        
Query: 252  ctgttgttgttgctccttcaagagagctaggaatgcagatagtgcgagaagtggagaaga 311
            | ||| ||||||||||||| |||||  |||||||||| ||||||||||||||||||||||
Sbjct: 857  cagttattgttgctccttctagagaattaggaatgcaaatagtgcgagaagtggagaaga 916

                                                                        
Query: 312  ttctgggtcctgatgataagagacttgtccagcaacttgttggcggtgctaaccgttcga 371
            |  |||| ||| ||||||||||||||||||| ||||||||||| |||||||| |||||||
Sbjct: 917  tattgggccctaatgataagagacttgtccaacaacttgttggtggtgctaatcgttcga 976

                                                          
Query: 372  ggcaagaggaagcactgaagaagaacaagcctatcatagttgttgg 417
            ||||||| |||||| |||||||||||||||| || || ||||||||
Sbjct: 977  ggcaagaagaagcattgaagaagaacaagccaattattgttgttgg 1022

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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score =  369 bits (186), Expect = 5e-99
 Identities = 351/406 (86%)
 Strand = Plus / Minus

                                                                            
Query: 12       ttgaagagctcggtctgccacctttgctcattgaccggctgaacaaggaaggcctaacct 71
                ||||||| |||||| ||||||||||||| || ||  || ||||||||||||| || ||  
Sbjct: 25530954 ttgaagaactcggtttgccacctttgcttatagataggttgaacaaggaaggtcttactg 25530895

                                                                            
Query: 72       ctccaactgaggtccaatctgcttctattcctgtcatatctcaaaggcatgatgcggtta 131
                |||||||||||||||| |||||| |||||||| |||| || |||| ||| ||||| ||||
Sbjct: 25530894 ctccaactgaggtccagtctgctgctattcctatcatttcacaaaagcacgatgcagtta 25530835

                                                                            
Query: 132      ttcaatcatatacagggtcagggaaaacacttgcgtaccttctccctattctttctgaaa 191
                | ||||||||||| || |||||||| |||||||| || ||||||||||||||||||||||
Sbjct: 25530834 tccaatcatatactggctcagggaagacacttgcttatcttctccctattctttctgaaa 25530775

                                                                            
Query: 192      taggacccctgaagagggctagagagcagggtaattctgagaagagatcaggtatagaag 251
                |||| || ||||||||| ||| ||| || |  | |||||| |||||||||||| |||| |
Sbjct: 25530774 taggccctctgaagaggcctacagaacaagacagttctgataagagatcaggtgtagagg 25530715

                                                                            
Query: 252      ctgttgttgttgctccttcaagagagctaggaatgcagatagtgcgagaagtggagaaga 311
                | ||| ||||||||||||| |||||  |||||||||| ||||||||||||||||||||||
Sbjct: 25530714 cagttattgttgctccttctagagaattaggaatgcaaatagtgcgagaagtggagaaga 25530655

                                                                            
Query: 312      ttctgggtcctgatgataagagacttgtccagcaacttgttggcggtgctaaccgttcga 371
                |  |||| ||| ||||||||||||||||||| ||||||||||| |||||||| |||||||
Sbjct: 25530654 tattgggccctaatgataagagacttgtccaacaacttgttggtggtgctaatcgttcga 25530595

                                                              
Query: 372      ggcaagaggaagcactgaagaagaacaagcctatcatagttgttgg 417
                ||||||| |||||| |||||||||||||||| || || ||||||||
Sbjct: 25530594 ggcaagaagaagcattgaagaagaacaagccaattattgttgttgg 25530549

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>dbj|AP005513.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
            clone:OSJNBa0014E22
          Length = 157627

 Score =  369 bits (186), Expect = 5e-99
 Identities = 351/406 (86%)
 Strand = Plus / Minus

                                                                        
Query: 12   ttgaagagctcggtctgccacctttgctcattgaccggctgaacaaggaaggcctaacct 71
            ||||||| |||||| ||||||||||||| || ||  || ||||||||||||| || ||  
Sbjct: 1001 ttgaagaactcggtttgccacctttgcttatagataggttgaacaaggaaggtcttactg 942

                                                                        
Query: 72   ctccaactgaggtccaatctgcttctattcctgtcatatctcaaaggcatgatgcggtta 131
            |||||||||||||||| |||||| |||||||| |||| || |||| ||| ||||| ||||
Sbjct: 941  ctccaactgaggtccagtctgctgctattcctatcatttcacaaaagcacgatgcagtta 882

                                                                        
Query: 132  ttcaatcatatacagggtcagggaaaacacttgcgtaccttctccctattctttctgaaa 191
            | ||||||||||| || |||||||| |||||||| || ||||||||||||||||||||||
Sbjct: 881  tccaatcatatactggctcagggaagacacttgcttatcttctccctattctttctgaaa 822

                                                                        
Query: 192  taggacccctgaagagggctagagagcagggtaattctgagaagagatcaggtatagaag 251
            |||| || ||||||||| ||| ||| || |  | |||||| |||||||||||| |||| |
Sbjct: 821  taggccctctgaagaggcctacagaacaagacagttctgataagagatcaggtgtagagg 762

                                                                        
Query: 252  ctgttgttgttgctccttcaagagagctaggaatgcagatagtgcgagaagtggagaaga 311
            | ||| ||||||||||||| |||||  |||||||||| ||||||||||||||||||||||
Sbjct: 761  cagttattgttgctccttctagagaattaggaatgcaaatagtgcgagaagtggagaaga 702

                                                                        
Query: 312  ttctgggtcctgatgataagagacttgtccagcaacttgttggcggtgctaaccgttcga 371
            |  |||| ||| ||||||||||||||||||| ||||||||||| |||||||| |||||||
Sbjct: 701  tattgggccctaatgataagagacttgtccaacaacttgttggtggtgctaatcgttcga 642

                                                          
Query: 372  ggcaagaggaagcactgaagaagaacaagcctatcatagttgttgg 417
            ||||||| |||||| |||||||||||||||| || || ||||||||
Sbjct: 641  ggcaagaagaagcattgaagaagaacaagccaattattgttgttgg 596

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>dbj|AP004067.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1581_H09
          Length = 86699

 Score =  369 bits (186), Expect = 5e-99
 Identities = 351/406 (86%)
 Strand = Plus / Minus

                                                                         
Query: 12    ttgaagagctcggtctgccacctttgctcattgaccggctgaacaaggaaggcctaacct 71
             ||||||| |||||| ||||||||||||| || ||  || ||||||||||||| || ||  
Sbjct: 22353 ttgaagaactcggtttgccacctttgcttatagataggttgaacaaggaaggtcttactg 22294

                                                                         
Query: 72    ctccaactgaggtccaatctgcttctattcctgtcatatctcaaaggcatgatgcggtta 131
             |||||||||||||||| |||||| |||||||| |||| || |||| ||| ||||| ||||
Sbjct: 22293 ctccaactgaggtccagtctgctgctattcctatcatttcacaaaagcacgatgcagtta 22234

                                                                         
Query: 132   ttcaatcatatacagggtcagggaaaacacttgcgtaccttctccctattctttctgaaa 191
             | ||||||||||| || |||||||| |||||||| || ||||||||||||||||||||||
Sbjct: 22233 tccaatcatatactggctcagggaagacacttgcttatcttctccctattctttctgaaa 22174

                                                                         
Query: 192   taggacccctgaagagggctagagagcagggtaattctgagaagagatcaggtatagaag 251
             |||| || ||||||||| ||| ||| || |  | |||||| |||||||||||| |||| |
Sbjct: 22173 taggccctctgaagaggcctacagaacaagacagttctgataagagatcaggtgtagagg 22114

                                                                         
Query: 252   ctgttgttgttgctccttcaagagagctaggaatgcagatagtgcgagaagtggagaaga 311
             | ||| ||||||||||||| |||||  |||||||||| ||||||||||||||||||||||
Sbjct: 22113 cagttattgttgctccttctagagaattaggaatgcaaatagtgcgagaagtggagaaga 22054

                                                                         
Query: 312   ttctgggtcctgatgataagagacttgtccagcaacttgttggcggtgctaaccgttcga 371
             |  |||| ||| ||||||||||||||||||| ||||||||||| |||||||| |||||||
Sbjct: 22053 tattgggccctaatgataagagacttgtccaacaacttgttggtggtgctaatcgttcga 21994

                                                           
Query: 372   ggcaagaggaagcactgaagaagaacaagcctatcatagttgttgg 417
             ||||||| |||||| |||||||||||||||| || || ||||||||
Sbjct: 21993 ggcaagaagaagcattgaagaagaacaagccaattattgttgttgg 21948

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>dbj|AK100670.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023112J15, full
            insert sequence
          Length = 2196

 Score =  369 bits (186), Expect = 5e-99
 Identities = 351/406 (86%)
 Strand = Plus / Plus

                                                                        
Query: 12   ttgaagagctcggtctgccacctttgctcattgaccggctgaacaaggaaggcctaacct 71
            ||||||| |||||| ||||||||||||| || ||  || ||||||||||||| || ||  
Sbjct: 617  ttgaagaactcggtttgccacctttgcttatagataggttgaacaaggaaggtcttactg 676

                                                                        
Query: 72   ctccaactgaggtccaatctgcttctattcctgtcatatctcaaaggcatgatgcggtta 131
            |||||||||||||||| |||||| |||||||| |||| || |||| ||| ||||| ||||
Sbjct: 677  ctccaactgaggtccagtctgctgctattcctatcatttcacaaaagcacgatgcagtta 736

                                                                        
Query: 132  ttcaatcatatacagggtcagggaaaacacttgcgtaccttctccctattctttctgaaa 191
            | ||||||||||| || |||||||| |||||||| || ||||||||||||||||||||||
Sbjct: 737  tccaatcatatactggctcagggaagacacttgcttatcttctccctattctttctgaaa 796

                                                                        
Query: 192  taggacccctgaagagggctagagagcagggtaattctgagaagagatcaggtatagaag 251
            |||| || ||||||||| ||| ||| || |  | |||||| |||||||||||| |||| |
Sbjct: 797  taggccctctgaagaggcctacagaacaagacagttctgataagagatcaggtgtagagg 856

                                                                        
Query: 252  ctgttgttgttgctccttcaagagagctaggaatgcagatagtgcgagaagtggagaaga 311
            | ||| ||||||||||||| |||||  |||||||||| ||||||||||||||||||||||
Sbjct: 857  cagttattgttgctccttctagagaattaggaatgcaaatagtgcgagaagtggagaaga 916

                                                                        
Query: 312  ttctgggtcctgatgataagagacttgtccagcaacttgttggcggtgctaaccgttcga 371
            |  |||| ||| ||||||||||||||||||| ||||||||||| |||||||| |||||||
Sbjct: 917  tattgggccctaatgataagagacttgtccaacaacttgttggtggtgctaatcgttcga 976

                                                          
Query: 372  ggcaagaggaagcactgaagaagaacaagcctatcatagttgttgg 417
            ||||||| |||||| |||||||||||||||| || || ||||||||
Sbjct: 977  ggcaagaagaagcattgaagaagaacaagccaattattgttgttgg 1022

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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  347 bits (175), Expect = 2e-92
 Identities = 337/391 (86%)
 Strand = Plus / Minus

                                                                           
Query: 12      ttgaagagctcggtctgccacctttgctcattgaccggctgaacaaggaaggcctaacct 71
               |||||||||| ||| |||| |||||||| || || ||| ||||||||||||| ||||   
Sbjct: 6255770 ttgaagagcttggtttgccgcctttgcttatagatcggttgaacaaggaaggtctaagta 6255711

                                                                           
Query: 72      ctccaactgaggtccaatctgcttctattcctgtcatatctcaaaggcatgatgcggtta 131
               |||||||||||||||| |||||| |||||||| |||| || |||| ||||||||| ||||
Sbjct: 6255710 ctccaactgaggtccagtctgctgctattcctatcatttcacaaaagcatgatgcagtta 6255651

                                                                           
Query: 132     ttcaatcatatacagggtcagggaaaacacttgcgtaccttctccctattctttctgaaa 191
               | || |||||||| || |||||||| ||||| || |||||||||||||||||||||||||
Sbjct: 6255650 tccagtcatatacgggctcagggaagacactcgcttaccttctccctattctttctgaaa 6255591

                                                                           
Query: 192     taggacccctgaagagggctagagagcagggtaattctgagaagagatcaggtatagaag 251
               |||| ||||| |||||| ||| ||| || | |  |||||| |||||||||||| |||| |
Sbjct: 6255590 taggccccctaaagaggcctacagaacaagatggttctgataagagatcaggtgtagagg 6255531

                                                                           
Query: 252     ctgttgttgttgctccttcaagagagctaggaatgcagatagtgcgagaagtggagaaga 311
               | ||| ||||||||||||| |||||  |||||||||||||||||||||||||||||||||
Sbjct: 6255530 cagttattgttgctccttccagagaattaggaatgcagatagtgcgagaagtggagaaga 6255471

                                                                           
Query: 312     ttctgggtcctgatgataagagacttgtccagcaacttgttggcggtgctaaccgttcga 371
               || |||| ||| |||||||||| |||||||| ||||||||||| || ||||| |||||||
Sbjct: 6255470 ttttgggccctaatgataagaggcttgtccaacaacttgttggtggggctaatcgttcga 6255411

                                              
Query: 372     ggcaagaggaagcactgaagaagaacaagcc 402
               |||| || |||||| |||| |||||||||||
Sbjct: 6255410 ggcaggaagaagcattgaaaaagaacaagcc 6255380

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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score =  347 bits (175), Expect = 2e-92
 Identities = 337/391 (86%)
 Strand = Plus / Minus

                                                                           
Query: 12      ttgaagagctcggtctgccacctttgctcattgaccggctgaacaaggaaggcctaacct 71
               |||||||||| ||| |||| |||||||| || || ||| ||||||||||||| ||||   
Sbjct: 6254983 ttgaagagcttggtttgccgcctttgcttatagatcggttgaacaaggaaggtctaagta 6254924

                                                                           
Query: 72      ctccaactgaggtccaatctgcttctattcctgtcatatctcaaaggcatgatgcggtta 131
               |||||||||||||||| |||||| |||||||| |||| || |||| ||||||||| ||||
Sbjct: 6254923 ctccaactgaggtccagtctgctgctattcctatcatttcacaaaagcatgatgcagtta 6254864

                                                                           
Query: 132     ttcaatcatatacagggtcagggaaaacacttgcgtaccttctccctattctttctgaaa 191
               | || |||||||| || |||||||| ||||| || |||||||||||||||||||||||||
Sbjct: 6254863 tccagtcatatacgggctcagggaagacactcgcttaccttctccctattctttctgaaa 6254804

                                                                           
Query: 192     taggacccctgaagagggctagagagcagggtaattctgagaagagatcaggtatagaag 251
               |||| ||||| |||||| ||| ||| || | |  |||||| |||||||||||| |||| |
Sbjct: 6254803 taggccccctaaagaggcctacagaacaagatggttctgataagagatcaggtgtagagg 6254744

                                                                           
Query: 252     ctgttgttgttgctccttcaagagagctaggaatgcagatagtgcgagaagtggagaaga 311
               | ||| ||||||||||||| |||||  |||||||||||||||||||||||||||||||||
Sbjct: 6254743 cagttattgttgctccttccagagaattaggaatgcagatagtgcgagaagtggagaaga 6254684

                                                                           
Query: 312     ttctgggtcctgatgataagagacttgtccagcaacttgttggcggtgctaaccgttcga 371
               || |||| ||| |||||||||| |||||||| ||||||||||| || ||||| |||||||
Sbjct: 6254683 ttttgggccctaatgataagaggcttgtccaacaacttgttggtggggctaatcgttcga 6254624

                                              
Query: 372     ggcaagaggaagcactgaagaagaacaagcc 402
               |||| || |||||| |||| |||||||||||
Sbjct: 6254623 ggcaggaagaagcattgaaaaagaacaagcc 6254593

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>gb|AC140006.1| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNAa0090D11, complete sequence
          Length = 115403

 Score =  347 bits (175), Expect = 2e-92
 Identities = 337/391 (86%)
 Strand = Plus / Minus

                                                                         
Query: 12    ttgaagagctcggtctgccacctttgctcattgaccggctgaacaaggaaggcctaacct 71
             |||||||||| ||| |||| |||||||| || || ||| ||||||||||||| ||||   
Sbjct: 94381 ttgaagagcttggtttgccgcctttgcttatagatcggttgaacaaggaaggtctaagta 94322

                                                                         
Query: 72    ctccaactgaggtccaatctgcttctattcctgtcatatctcaaaggcatgatgcggtta 131
             |||||||||||||||| |||||| |||||||| |||| || |||| ||||||||| ||||
Sbjct: 94321 ctccaactgaggtccagtctgctgctattcctatcatttcacaaaagcatgatgcagtta 94262

                                                                         
Query: 132   ttcaatcatatacagggtcagggaaaacacttgcgtaccttctccctattctttctgaaa 191
             | || |||||||| || |||||||| ||||| || |||||||||||||||||||||||||
Sbjct: 94261 tccagtcatatacgggctcagggaagacactcgcttaccttctccctattctttctgaaa 94202

                                                                         
Query: 192   taggacccctgaagagggctagagagcagggtaattctgagaagagatcaggtatagaag 251
             |||| ||||| |||||| ||| ||| || | |  |||||| |||||||||||| |||| |
Sbjct: 94201 taggccccctaaagaggcctacagaacaagatggttctgataagagatcaggtgtagagg 94142

                                                                         
Query: 252   ctgttgttgttgctccttcaagagagctaggaatgcagatagtgcgagaagtggagaaga 311
             | ||| ||||||||||||| |||||  |||||||||||||||||||||||||||||||||
Sbjct: 94141 cagttattgttgctccttccagagaattaggaatgcagatagtgcgagaagtggagaaga 94082

                                                                         
Query: 312   ttctgggtcctgatgataagagacttgtccagcaacttgttggcggtgctaaccgttcga 371
             || |||| ||| |||||||||| |||||||| ||||||||||| || ||||| |||||||
Sbjct: 94081 ttttgggccctaatgataagaggcttgtccaacaacttgttggtggggctaatcgttcga 94022

                                            
Query: 372   ggcaagaggaagcactgaagaagaacaagcc 402
             |||| || |||||| |||| |||||||||||
Sbjct: 94021 ggcaggaagaagcattgaaaaagaacaagcc 93991

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>gb|AC104474.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBa0024O21, complete sequence
          Length = 155651

 Score =  347 bits (175), Expect = 2e-92
 Identities = 337/391 (86%)
 Strand = Plus / Minus

                                                                         
Query: 12    ttgaagagctcggtctgccacctttgctcattgaccggctgaacaaggaaggcctaacct 71
             |||||||||| ||| |||| |||||||| || || ||| ||||||||||||| ||||   
Sbjct: 68978 ttgaagagcttggtttgccgcctttgcttatagatcggttgaacaaggaaggtctaagta 68919

                                                                         
Query: 72    ctccaactgaggtccaatctgcttctattcctgtcatatctcaaaggcatgatgcggtta 131
             |||||||||||||||| |||||| |||||||| |||| || |||| ||||||||| ||||
Sbjct: 68918 ctccaactgaggtccagtctgctgctattcctatcatttcacaaaagcatgatgcagtta 68859

                                                                         
Query: 132   ttcaatcatatacagggtcagggaaaacacttgcgtaccttctccctattctttctgaaa 191
             | || |||||||| || |||||||| ||||| || |||||||||||||||||||||||||
Sbjct: 68858 tccagtcatatacgggctcagggaagacactcgcttaccttctccctattctttctgaaa 68799

                                                                         
Query: 192   taggacccctgaagagggctagagagcagggtaattctgagaagagatcaggtatagaag 251
             |||| ||||| |||||| ||| ||| || | |  |||||| |||||||||||| |||| |
Sbjct: 68798 taggccccctaaagaggcctacagaacaagatggttctgataagagatcaggtgtagagg 68739

                                                                         
Query: 252   ctgttgttgttgctccttcaagagagctaggaatgcagatagtgcgagaagtggagaaga 311
             | ||| ||||||||||||| |||||  |||||||||||||||||||||||||||||||||
Sbjct: 68738 cagttattgttgctccttccagagaattaggaatgcagatagtgcgagaagtggagaaga 68679

                                                                         
Query: 312   ttctgggtcctgatgataagagacttgtccagcaacttgttggcggtgctaaccgttcga 371
             || |||| ||| |||||||||| |||||||| ||||||||||| || ||||| |||||||
Sbjct: 68678 ttttgggccctaatgataagaggcttgtccaacaacttgttggtggggctaatcgttcga 68619

                                            
Query: 372   ggcaagaggaagcactgaagaagaacaagcc 402
             |||| || |||||| |||| |||||||||||
Sbjct: 68618 ggcaggaagaagcattgaaaaagaacaagcc 68588

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>dbj|AK071610.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023104M07, full
            insert sequence
          Length = 2101

 Score =  347 bits (175), Expect = 2e-92
 Identities = 337/391 (86%)
 Strand = Plus / Plus

                                                                        
Query: 12   ttgaagagctcggtctgccacctttgctcattgaccggctgaacaaggaaggcctaacct 71
            |||||||||| ||| |||| |||||||| || || ||| ||||||||||||| ||||   
Sbjct: 625  ttgaagagcttggtttgccgcctttgcttatagatcggttgaacaaggaaggtctaagta 684

                                                                        
Query: 72   ctccaactgaggtccaatctgcttctattcctgtcatatctcaaaggcatgatgcggtta 131
            |||||||||||||||| |||||| |||||||| |||| || |||| ||||||||| ||||
Sbjct: 685  ctccaactgaggtccagtctgctgctattcctatcatttcacaaaagcatgatgcagtta 744

                                                                        
Query: 132  ttcaatcatatacagggtcagggaaaacacttgcgtaccttctccctattctttctgaaa 191
            | || |||||||| || |||||||| ||||| || |||||||||||||||||||||||||
Sbjct: 745  tccagtcatatacgggctcagggaagacactcgcttaccttctccctattctttctgaaa 804

                                                                        
Query: 192  taggacccctgaagagggctagagagcagggtaattctgagaagagatcaggtatagaag 251
            |||| ||||| |||||| ||| ||| || | |  |||||| |||||||||||| |||| |
Sbjct: 805  taggccccctaaagaggcctacagaacaagatggttctgataagagatcaggtgtagagg 864

                                                                        
Query: 252  ctgttgttgttgctccttcaagagagctaggaatgcagatagtgcgagaagtggagaaga 311
            | ||| ||||||||||||| |||||  |||||||||||||||||||||||||||||||||
Sbjct: 865  cagttattgttgctccttccagagaattaggaatgcagatagtgcgagaagtggagaaga 924

                                                                        
Query: 312  ttctgggtcctgatgataagagacttgtccagcaacttgttggcggtgctaaccgttcga 371
            || |||| ||| |||||||||| |||||||| ||||||||||| || ||||| |||||||
Sbjct: 925  ttttgggccctaatgataagaggcttgtccaacaacttgttggtggggctaatcgttcga 984

                                           
Query: 372  ggcaagaggaagcactgaagaagaacaagcc 402
            |||| || |||||| |||| |||||||||||
Sbjct: 985  ggcaggaagaagcattgaaaaagaacaagcc 1015

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>ref|NM_188251.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1485

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 143 acagggtcagggaaaacacttgcgtacctt 172
           ||||| ||||||||||||||||| ||||||
Sbjct: 409 acaggatcagggaaaacacttgcttacctt 438

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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                             
Query: 143     acagggtcagggaaaacacttgcgtacctt 172
               ||||| ||||||||||||||||| ||||||
Sbjct: 5248658 acaggatcagggaaaacacttgcttacctt 5248629

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>dbj|AP003244.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0419B01
          Length = 149610

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                           
Query: 143   acagggtcagggaaaacacttgcgtacctt 172
             ||||| ||||||||||||||||| ||||||
Sbjct: 43909 acaggatcagggaaaacacttgcttacctt 43880

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>emb|AL139294.15| Human DNA sequence from clone RP5-1044H5 on chromosome 1p31.2-32.3
             Contains the 5' end of the DNAJC6 gene for DnaJ (Hsp40)
             homolog subfamily C member 6, a novel gene and a
             cytochrome c oxidase subunit VIc (COX6C) pseudogene,
             complete sequence
          Length = 93614

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 100   tcctgtcatatctcaaaggca 120
             |||||||||||||||||||||
Sbjct: 64321 tcctgtcatatctcaaaggca 64341

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>gb|AC105091.3| Homo sapiens chromosome 8, clone RP11-479P21, complete sequence
          Length = 173888

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 378   aggaagcactgaagaagaaca 398
             |||||||||||||||||||||
Sbjct: 87603 aggaagcactgaagaagaaca 87583

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>gb|AC099016.1| Drosophila melanogaster, chromosome 2R, region 56A-56A, BAC clone
              BACR27C21, complete sequence
          Length = 173373

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 251    gctgttgttgttgctccttca 271
              |||||||||||||||||||||
Sbjct: 123707 gctgttgttgttgctccttca 123727

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>gb|AE003797.3| Drosophila melanogaster chromosome 2R, section 53 of 73 of the complete
             sequence
          Length = 306854

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 251   gctgttgttgttgctccttca 271
             |||||||||||||||||||||
Sbjct: 22366 gctgttgttgttgctccttca 22386

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>gb|AC004298.1|AC004298 Drosophila melanogaster DNA sequence (P1 DS02599 (D184)), complete
            sequence
          Length = 81522

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 251  gctgttgttgttgctccttca 271
            |||||||||||||||||||||
Sbjct: 4815 gctgttgttgttgctccttca 4795

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>ref|XM_472924.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1989

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 169  ccttctccctattctttctg 188
            ||||||||||||||||||||
Sbjct: 1312 ccttctccctattctttctg 1293

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>ref|XM_423552.1| PREDICTED: Gallus gallus similar to Myeloid/lymphoid or mixed-lineage
            leukemia protein 2 (ALL1-related protein) (LOC425846),
            partial mRNA
          Length = 3528

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 313  tctgggtcctgatgataaga 332
            ||||||||||||||||||||
Sbjct: 3242 tctgggtcctgatgataaga 3261

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>gb|AC131110.3| Mus musculus BAC clone RP23-387J23 from chromosome 6, complete sequence
          Length = 205463

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 187   tgaaataggacccctgaaga 206
             ||||||||||||||||||||
Sbjct: 45686 tgaaataggacccctgaaga 45667

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>gb|AC164156.2| Mus musculus BAC clone RP24-549I8 from chromosome 1, complete sequence
          Length = 173764

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 273    gagagctaggaatgcagata 292
              ||||||||||||||||||||
Sbjct: 132616 gagagctaggaatgcagata 132635

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>gb|AC124497.3| Mus musculus BAC clone RP23-480E8 from chromosome 5, complete sequence
          Length = 206926

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 69     cctctccaactgaggtccaa 88
              ||||||||||||||||||||
Sbjct: 202233 cctctccaactgaggtccaa 202252

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>gb|AC124534.4| Mus musculus BAC clone RP23-316G7 from chromosome 1, complete sequence
          Length = 177675

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 273    gagagctaggaatgcagata 292
              ||||||||||||||||||||
Sbjct: 141910 gagagctaggaatgcagata 141891

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>emb|AL590362.12| Human DNA sequence from clone RP11-214G2 on chromosome 9 Contains a CpG
             island, complete sequence
          Length = 154698

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 170   cttctccctattctttctga 189
             ||||||||||||||||||||
Sbjct: 46732 cttctccctattctttctga 46713

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>emb|AL353804.22| Human DNA sequence from clone RP13-216E22 on chromosome Xq13.1-21.1
            Note the TSIX gene (see AmJHumGenet 69, 951) is known to
            overlap the XIST locus however this transcript has not
            been submitted to the databases and therefore it is not
            possible at this stage to annotate the locus, complete
            sequence
          Length = 167668

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 311  attctgggtcctgatgataagaga 334
            |||||||||||||| |||||||||
Sbjct: 6907 attctgggtcctgaggataagaga 6884

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>emb|AL935254.1| Lactobacillus plantarum strain WCFS1 complete genome; segment 3/11
          Length = 317050

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 120   atgatgcggttattcaatca 139
             ||||||||||||||||||||
Sbjct: 10268 atgatgcggttattcaatca 10287

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>emb|AL606614.3|OSJN00047 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0011N17,
              complete sequence
          Length = 129498

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 169    ccttctccctattctttctg 188
              ||||||||||||||||||||
Sbjct: 107248 ccttctccctattctttctg 107267

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>emb|CR536621.7| Zebrafish DNA sequence from clone CH211-158M1, complete sequence
          Length = 155945

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 143   acagggtcagggaaaacact 162
             ||||||||||||||||||||
Sbjct: 88701 acagggtcagggaaaacact 88720

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>emb|CR388098.7| Zebrafish DNA sequence from clone DKEY-12J14 in linkage group 13,
              complete sequence
          Length = 192818

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 180    ttctttctgaaataggaccc 199
              ||||||||||||||||||||
Sbjct: 126587 ttctttctgaaataggaccc 126568

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>emb|CR749383.1| Homo sapiens mRNA; cDNA DKFZp779P0129 (from clone DKFZp779P0129)
          Length = 4890

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 311  attctgggtcctgatgataagaga 334
            |||||||||||||| |||||||||
Sbjct: 4706 attctgggtcctgaggataagaga 4729

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>gb|M97168.1|HUMXIST Homo sapiens X (inactive)-specific transcript (XIST) complete exon
          Length = 16481

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 311   attctgggtcctgatgataagaga 334
             |||||||||||||| |||||||||
Sbjct: 16422 attctgggtcctgaggataagaga 16445

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>ref|NR_001564.1| Homo sapiens X (inactive)-specific transcript (XIST) on chromosome X
          Length = 19271

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 311   attctgggtcctgatgataagaga 334
             |||||||||||||| |||||||||
Sbjct: 16427 attctgggtcctgaggataagaga 16450

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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 169      ccttctccctattctttctg 188
                ||||||||||||||||||||
Sbjct: 24110269 ccttctccctattctttctg 24110288

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>emb|BX072573.5| Zebrafish DNA sequence from clone DKEY-16I6, complete sequence
          Length = 207797

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 180   ttctttctgaaataggaccc 199
             ||||||||||||||||||||
Sbjct: 95753 ttctttctgaaataggaccc 95772

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>dbj|AK025198.1| Homo sapiens cDNA: FLJ21545 fis, clone COL06195
          Length = 2176

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 311  attctgggtcctgatgataagaga 334
            |||||||||||||| |||||||||
Sbjct: 1982 attctgggtcctgaggataagaga 2005

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>dbj|AK068497.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013155G23, full
            insert sequence
          Length = 2486

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 169  ccttctccctattctttctg 188
            ||||||||||||||||||||
Sbjct: 1459 ccttctccctattctttctg 1440

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>gb|AC123827.4| Mus musculus BAC clone RP24-100N12 from 5, complete sequence
          Length = 185363

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 69   cctctccaactgaggtccaa 88
            ||||||||||||||||||||
Sbjct: 6669 cctctccaactgaggtccaa 6688

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>gb|AC110621.6| Mus musculus BAC clone RP23-157I3 from 7, complete sequence
          Length = 202956

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 336  ttgtccagcaacttgttggc 355
            ||||||||||||||||||||
Sbjct: 4631 ttgtccagcaacttgttggc 4612

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>gb|AC135109.5| Mus musculus BAC clone RP23-180O9 from 7, complete sequence
          Length = 183312

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 336    ttgtccagcaacttgttggc 355
              ||||||||||||||||||||
Sbjct: 151149 ttgtccagcaacttgttggc 151130

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>gb|AC140253.3| Mus musculus BAC clone RP23-298L2 from 3, complete sequence
          Length = 199167

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 374   caagaggaagcactgaagaa 393
             ||||||||||||||||||||
Sbjct: 94895 caagaggaagcactgaagaa 94914


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,392,822
Number of Sequences: 3902068
Number of extensions: 4392822
Number of successful extensions: 76876
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 76744
Number of HSP's gapped (non-prelim): 132
length of query: 421
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 399
effective length of database: 17,147,199,772
effective search space: 6841732709028
effective search space used: 6841732709028
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result