ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet101e09 |
|---|---|
| Clone Library Name | barley_pub |
>MTNN_HAEIN (P45113) MTA/SAH nucleosidase (EC 3.2.2.9) (5'-methylthioadenosine| nucleosidase) (S-adenosylhomocysteine nucleosidase) Length = 229 Score = 43.1 bits (100), Expect = 3e-04 Identities = 21/40 (52%), Positives = 27/40 (67%) Frame = +2 Query: 308 GKDPLLGVDSVGTVSAALVTYASIQLLKPDLIINAGTAGG 427 GKD L +G V+AA+ T A +QL KPD +IN G+AGG Sbjct: 40 GKDVALLQSGIGKVAAAIGTTALLQLAKPDCVINTGSAGG 79
>MTNN_BUCAP (O51931) MTA/SAH nucleosidase (EC 3.2.2.9) (5'-methylthioadenosine| nucleosidase) (S-adenosylhomocysteine nucleosidase) Length = 235 Score = 39.3 bits (90), Expect = 0.004 Identities = 22/54 (40%), Positives = 31/54 (57%) Frame = +2 Query: 263 YHGEYKGLHIDLVWPGKDPLLGVDSVGTVSAALVTYASIQLLKPDLIINAGTAG 424 Y G +K + I L+ G +G VSA++ T SI L +PD IIN+G+AG Sbjct: 34 YTGTFKKIEIFLILSG---------IGKVSASMSTTISINLFQPDFIINSGSAG 78
>MTNN_BACSU (O32028) MTA/SAH nucleosidase (EC 3.2.2.9) (5'-methylthioadenosine| nucleosidase) (S-adenosylhomocysteine nucleosidase) Length = 231 Score = 39.3 bits (90), Expect = 0.004 Identities = 21/54 (38%), Positives = 30/54 (55%) Frame = +2 Query: 269 GEYKGLHIDLVWPGKDPLLGVDSVGTVSAALVTYASIQLLKPDLIINAGTAGGF 430 GEY+G + L+ G +G V+AA+ T + KPD +IN G+AGGF Sbjct: 36 GEYEGTEVILLKSG---------IGKVNAAISTTLLLDRYKPDYVINTGSAGGF 80
>MTNN_BUCAI (P57306) MTA/SAH nucleosidase (EC 3.2.2.9) (5'-methylthioadenosine| nucleosidase) (S-adenosylhomocysteine nucleosidase) Length = 232 Score = 37.4 bits (85), Expect = 0.016 Identities = 27/95 (28%), Positives = 43/95 (45%) Frame = +2 Query: 149 VLVVIAMQTEALPLVTRFQLVEAAADESIFPKGAPWTRYHGEYKGLHIDLVWPGKDPLLG 328 ++ I +TE L + F + + I Y G++K + L+ G Sbjct: 5 IIGAINQETERLKKIIHFYIEKKINTYKI---------YIGKFKSHDVFLIKSG------ 49 Query: 329 VDSVGTVSAALVTYASIQLLKPDLIINAGTAGGFK 433 +G VSA++ T I L KPD IIN+G+AG + Sbjct: 50 ---IGKVSASVATMILIDLYKPDTIINSGSAGSLQ 81
>MTNN_SHIFL (P0AF15) MTA/SAH nucleosidase (EC 3.2.2.9) (P46)| (5'-methylthioadenosine nucleosidase) (S-adenosylhomocysteine nucleosidase) Length = 232 Score = 34.7 bits (78), Expect = 0.10 Identities = 20/55 (36%), Positives = 29/55 (52%) Frame = +2 Query: 263 YHGEYKGLHIDLVWPGKDPLLGVDSVGTVSAALVTYASIQLLKPDLIINAGTAGG 427 Y G+ G + L+ G +G V+AAL ++ KPD+IIN G+AGG Sbjct: 34 YTGQLNGTEVALLKSG---------IGKVAAALGATLLLEHCKPDVIINTGSAGG 79
>MTNN_SALTY (P60217) MTA/SAH nucleosidase (EC 3.2.2.9) (P46)| (5'-methylthioadenosine nucleosidase) (S-adenosylhomocysteine nucleosidase) Length = 232 Score = 34.7 bits (78), Expect = 0.10 Identities = 20/55 (36%), Positives = 29/55 (52%) Frame = +2 Query: 263 YHGEYKGLHIDLVWPGKDPLLGVDSVGTVSAALVTYASIQLLKPDLIINAGTAGG 427 Y G+ G + L+ G +G V+AAL ++ KPD+IIN G+AGG Sbjct: 34 YTGQLNGTEVALLKSG---------IGKVAAALGATLLLEHCKPDVIINTGSAGG 79
>MTNN_SALTI (P60216) MTA/SAH nucleosidase (EC 3.2.2.9) (P46)| (5'-methylthioadenosine nucleosidase) (S-adenosylhomocysteine nucleosidase) Length = 232 Score = 34.7 bits (78), Expect = 0.10 Identities = 20/55 (36%), Positives = 29/55 (52%) Frame = +2 Query: 263 YHGEYKGLHIDLVWPGKDPLLGVDSVGTVSAALVTYASIQLLKPDLIINAGTAGG 427 Y G+ G + L+ G +G V+AAL ++ KPD+IIN G+AGG Sbjct: 34 YTGQLNGTEVALLKSG---------IGKVAAALGATLLLEHCKPDVIINTGSAGG 79
>MTNN_ECOLI (P0AF12) MTA/SAH nucleosidase (EC 3.2.2.9) (P46)| (5'-methylthioadenosine nucleosidase) (S-adenosylhomocysteine nucleosidase) Length = 232 Score = 34.7 bits (78), Expect = 0.10 Identities = 20/55 (36%), Positives = 29/55 (52%) Frame = +2 Query: 263 YHGEYKGLHIDLVWPGKDPLLGVDSVGTVSAALVTYASIQLLKPDLIINAGTAGG 427 Y G+ G + L+ G +G V+AAL ++ KPD+IIN G+AGG Sbjct: 34 YTGQLNGTEVALLKSG---------IGKVAAALGATLLLEHCKPDVIINTGSAGG 79
>MTNN_ECOL6 (P0AF13) MTA/SAH nucleosidase (EC 3.2.2.9) (P46)| (5'-methylthioadenosine nucleosidase) (S-adenosylhomocysteine nucleosidase) Length = 232 Score = 34.7 bits (78), Expect = 0.10 Identities = 20/55 (36%), Positives = 29/55 (52%) Frame = +2 Query: 263 YHGEYKGLHIDLVWPGKDPLLGVDSVGTVSAALVTYASIQLLKPDLIINAGTAGG 427 Y G+ G + L+ G +G V+AAL ++ KPD+IIN G+AGG Sbjct: 34 YTGQLNGTEVALLKSG---------IGKVAAALGATLLLEHCKPDVIINTGSAGG 79
>MTNN_ECO57 (P0AF14) MTA/SAH nucleosidase (EC 3.2.2.9) (P46)| (5'-methylthioadenosine nucleosidase) (S-adenosylhomocysteine nucleosidase) Length = 232 Score = 34.7 bits (78), Expect = 0.10 Identities = 20/55 (36%), Positives = 29/55 (52%) Frame = +2 Query: 263 YHGEYKGLHIDLVWPGKDPLLGVDSVGTVSAALVTYASIQLLKPDLIINAGTAGG 427 Y G+ G + L+ G +G V+AAL ++ KPD+IIN G+AGG Sbjct: 34 YTGQLNGTEVALLKSG---------IGKVAAALGATLLLEHCKPDVIINTGSAGG 79
>CLPP_THIDA (Q3SI98) ATP-dependent Clp protease proteolytic subunit (EC| 3.4.21.92) (Endopeptidase Clp) Length = 212 Score = 29.3 bits (64), Expect = 4.3 Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 5/47 (10%) Frame = +2 Query: 305 PGKDPLLGVDSVG-TVSAALVTYASIQLLKPDL----IINAGTAGGF 430 P KD L ++S G +VSA L Y ++Q +KPD+ I A + G F Sbjct: 70 PDKDIYLYINSPGGSVSAGLAIYDTMQFIKPDVSTLCIGQAASMGAF 116
>SYL_CAUCR (Q9A217) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine--tRNA ligase)| (LeuRS) Length = 861 Score = 29.3 bits (64), Expect = 4.3 Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 2/61 (3%) Frame = +2 Query: 158 VIAMQTEALPLVTRF--QLVEAAADESIFPKGAPWTRYHGEYKGLHIDLVWPGKDPLLGV 331 V+A + EAL ++ R A+E+ W R GE G+ +D WP DP L Sbjct: 747 VLAARAEALNILARLVAPFTPHLAEEA-------WARMGGE--GMVVDAPWPKADPALAA 797 Query: 332 D 334 D Sbjct: 798 D 798
>POLG_PRSVH (Q01901) Genome polyprotein [Contains: P1 proteinase (N-terminal| protein); Helper component proteinase (EC 3.4.22.45) (HC-pro); Protein P3; 6 kDa protein 1 (6K1); Cytoplasmic inclusion protein (EC 3.6.1.-) (CI); 6 kDa protein 2 (6K2); Viral ge Length = 3344 Score = 28.9 bits (63), Expect = 5.7 Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 6/48 (12%) Frame = -3 Query: 337 TVHSEQRIFSRPYKVN------VEAFVFAMVPSPWGTFRKYGLVGGRL 212 TVH + + RPYK+ EA + V S W + R Y VGGRL Sbjct: 1837 TVHPKIDVLLRPYKLRDCEVRLSEAAIPHGVQSIWLSARDYEAVGGRL 1884
>CLPP_RALSO (Q8XYP7) ATP-dependent Clp protease proteolytic subunit (EC| 3.4.21.92) (Endopeptidase Clp) Length = 217 Score = 28.1 bits (61), Expect = 9.7 Identities = 15/33 (45%), Positives = 22/33 (66%), Gaps = 1/33 (3%) Frame = +2 Query: 305 PGKDPLLGVDSVG-TVSAALVTYASIQLLKPDL 400 P KD L ++S G +VSA L Y ++Q +KPD+ Sbjct: 78 PDKDISLYINSPGGSVSAGLAMYDTMQFVKPDV 110
>CLPP_RALEJ (Q472D3) ATP-dependent Clp protease proteolytic subunit (EC| 3.4.21.92) (Endopeptidase Clp) Length = 216 Score = 28.1 bits (61), Expect = 9.7 Identities = 15/33 (45%), Positives = 22/33 (66%), Gaps = 1/33 (3%) Frame = +2 Query: 305 PGKDPLLGVDSVG-TVSAALVTYASIQLLKPDL 400 P KD L ++S G +VSA L Y ++Q +KPD+ Sbjct: 78 PDKDISLYINSPGGSVSAGLAIYDTMQFVKPDV 110
>ARGC_BACHD (Q9K8V2) N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38)| (AGPR) (N-acetyl-glutamate semialdehyde dehydrogenase) (NAGSA dehydrogenase) Length = 345 Score = 28.1 bits (61), Expect = 9.7 Identities = 10/36 (27%), Positives = 17/36 (47%) Frame = -1 Query: 279 LYSPWYRVHGAPLGNMDSSAAASTSWNRVTSGSASV 172 +Y WY+ AP+G + + T W R +A + Sbjct: 108 VYEAWYKRQAAPVGTIRGAVYGLTEWQRDEIAAAQI 143 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 46,860,755 Number of Sequences: 219361 Number of extensions: 898539 Number of successful extensions: 3127 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 3027 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3127 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2511994855 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
