ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet101d12 |
|---|---|
| Clone Library Name | barley_pub |
>gb|M55447.1|BLYRCAA2 Hordeum vulgare rubisco activase (RcaA2) mRNA, complete cds Length = 1709 Score = 821 bits (414), Expect = 0.0 Identities = 440/446 (98%), Gaps = 2/446 (0%) Strand = Plus / Plus Query: 30 tgatcaccagcacagccgcgcgcatccaccgttgctagcaaggtcgaccaagcagcacag 89 ||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 81 tgatcgccagcacagccgcgcgcatccaccgttg-tagcaaggtcgaccaagcagcacag 139 Query: 90 agatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcc 149 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 140 agatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcc 199 Query: 150 tcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctcca 209 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 200 tcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctcca 259 Query: 210 aggccaacaggttcacagtcatggcagcggagaacatcgacgagaagaggaacaccgaca 269 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 260 aggccaacaggttcacagtcatggcagcggagaacatcgacgagaagaggaacaccgaca 319 Query: 270 agtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaagg 329 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 320 agtggaagggtcttgctaccgatatctccgacgaccagcaggacatcaccagagggaagg 379 Query: 330 gcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtcctca 389 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 380 gcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtcctca 439 Query: 390 gctcctacgagtacgtcagccagggcctgcggaagtacgacttcgac-acaccatgggag 448 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 440 gctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatgggag 499 Query: 449 gcttctacatcgctcctgctttcatg 474 |||||||||||||||||||||||||| Sbjct: 500 gcttctacatcgctcctgctttcatg 525
>gb|BC029790.1| Homo sapiens, clone IMAGE:5192697, mRNA Length = 1643 Score = 745 bits (376), Expect = 0.0 Identities = 431/447 (96%), Gaps = 3/447 (0%) Strand = Plus / Plus Query: 29 ctgatcaccagcacagccgcgcgcatccaccgttgctagcaaggtcgaccaagcagcaca 88 |||||||||||||||||||||| |||||||| ||||||||||||||| ||||||||||| Sbjct: 1 ctgatcaccagcacagccgcgc--atccaccgctgctagcaaggtcgagcaagcagcaca 58 Query: 89 gagatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttc 148 |||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| Sbjct: 59 gagatggctgctgccttctcctccaccgtcggtgccccggcttctacgccgaccaacttc 118 Query: 149 ctcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctcc 208 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 119 ctcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctcc 178 Query: 209 aaggccaacaggttcacagtcatggcagcggagaacatcgacgagaagaggaacaccgac 268 ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| Sbjct: 179 aaggccaacaggttcacggtcatggcagcggaaaacatcgacgagaagaggaacaccgac 238 Query: 269 aagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaag 328 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 239 aagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaag 298 Query: 329 ggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtcctc 388 |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 299 ggcatcgtggactccctcttccaggcgcccactggcgacggcacccacgaggccgtcctc 358 Query: 389 agctcctacgagtacgtcagccagggcctgcggaagtacgacttcgac-acaccatggga 447 ||||| |||||||||||||||||||| || |||||||||||||||| ||||||||||| Sbjct: 359 agctcatacgagtacgtcagccagggactcaagaagtacgacttcgacaacaccatggga 418 Query: 448 ggcttctacatcgctcctgctttcatg 474 ||||||||||||||||||||||||||| Sbjct: 419 ggcttctacatcgctcctgctttcatg 445
>gb|M55449.1|BLYRCABG Hordeum vulgare subsp. vulgare ribulose 1,5-bisphosphate carboxylase activase (RcaB) gene, complete cds; and ribulose 1,5-bisphosphate carboxylase activase (RcaA) gene, alternatively spliced, complete cds Length = 8766 Score = 660 bits (333), Expect = 0.0 Identities = 346/349 (99%), Gaps = 1/349 (0%) Strand = Plus / Plus Query: 127 ggcttctacgccgaccaacttcctcgggaagaagctcaagaagcaggtgacctcggccgt 186 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5518 ggcttctacgccgaccaacttcctcgggaagaagctcaagaagcaggtgacctcggccgt 5577 Query: 187 gaactaccatggcaagagctccaaggccaacaggttcacagtcatggcagcggagaacat 246 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5578 gaactaccatggcaagagctccaaggccaacaggttcacagtcatggcagcggagaacat 5637 Query: 247 cgacgagaagaggaacaccgacaagtggaagggtcttgcgtacgatatctccgacgacca 306 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5638 cgacgagaagaggaacaccgacaagtggaagggtcttgcgtacgatatctccgacgacca 5697 Query: 307 gcaggacatcaccagagggaagggcatcgtggactcgctcttccaggcgcccacgggcga 366 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 5698 gcaggacatcaccagagggaagggcatcgtggactcgctcttccaggcgcccacggggca 5757 Query: 367 cggcacccacgaggccgtcctcagctcctacgagtacgtcagccagggcctgcggaagta 426 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5758 cggcacccacgaggccgtcctcagctcctacgagtacgtcagccagggcctgcggaagta 5817 Query: 427 cgacttcgac-acaccatgggaggcttctacatcgctcctgctttcatg 474 |||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 5818 cgacttcgacaacaccatgggaggcttctacatcgctcctgctttcatg 5866 Score = 220 bits (111), Expect = 3e-54 Identities = 125/127 (98%), Gaps = 2/127 (1%) Strand = Plus / Plus Query: 2 actttgagcagcagcagtcattcatcactgatcaccagcacagccgcgcgcatccaccgt 61 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 5274 actttgagcagcagcagt-attcatcactgatcaccagcacagccgcgcgcatccaccgt 5332 Query: 62 tgctagcaaggtcgaccaagcagcacagagatggctgctgccttctcctccaccgtcggg 121 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5333 tg-tagcaaggtcgaccaagcagcacagagatggctgctgccttctcctccaccgtcggg 5391 Query: 122 gctccgg 128 ||||||| Sbjct: 5392 gctccgg 5398 Score = 214 bits (108), Expect = 2e-52 Identities = 160/176 (90%), Gaps = 1/176 (0%) Strand = Plus / Plus Query: 271 gtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 330 |||||||||||| || ||||| ||||| |||||||||||||||||||| | ||||| || Sbjct: 2939 gtggaagggtctggcctacgacatctcggacgaccagcaggacatcactcgggggaaagg 2998 Query: 331 catcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtcctcag 390 |||||||||||| || |||||||| |||| |||||||||||||||||||||| |||| || Sbjct: 2999 catcgtggactccctgttccaggcccccatgggcgacggcacccacgaggccatcctaag 3058 Query: 391 ctcctacgagtacgtcagccagggcctgcggaagtacgacttcgac-acaccatgg 445 ||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| Sbjct: 3059 ctcctacgagtacatcagccagggcctgcggaagtacgacttcgacaacaccatgg 3114
>gb|M55446.1|BLYRCAA1 Hordeum vulgare rubisco activase (RcaA1) mRNA, 3' end Length = 1394 Score = 496 bits (250), Expect = e-137 Identities = 266/270 (98%), Gaps = 1/270 (0%) Strand = Plus / Plus Query: 206 tccaaggccaacaggttcacagtcatggcagcggagaacatcgacgagaagaggaacacc 265 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 tccaaggccaacaggttcacagtcatggcagcggagaacatcgacgagaagaggaacacc 60 Query: 266 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 325 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 61 gacaagtggaagggtcttgctaccgatatctccgacgaccagcaggacatcaccagaggg 120 Query: 326 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 385 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 180 Query: 386 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgac-acaccatg 444 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 181 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 240 Query: 445 ggaggcttctacatcgctcctgctttcatg 474 |||||||||||||||||||||||||||||| Sbjct: 241 ggaggcttctacatcgctcctgctttcatg 270
>gb|AY312573.1| Deschampsia antarctica Rubisco activase alpha form precursor (RCA1) mRNA, complete cds; nuclear gene for chloroplast product Length = 1616 Score = 274 bits (138), Expect = 2e-70 Identities = 193/210 (91%), Gaps = 1/210 (0%) Strand = Plus / Plus Query: 266 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 325 |||||||||||||| || || ||||||||||||||||||||||||||||||||||| || Sbjct: 257 gacaagtggaagggcctcgcctacgatatctccgacgaccagcaggacatcaccaggggt 316 Query: 326 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 385 ||||| ||||| ||||| || ||||||||||||| |||||| |||||||||||||||||| Sbjct: 317 aagggtatcgtcgactccctgttccaggcgcccatgggcgatggcacccacgaggccgtc 376 Query: 386 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgac-acaccatg 444 |||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| Sbjct: 377 ctcagctcctacgagtacgtcagccagggcctcaagaagtacgacttcgacaacaccatg 436 Query: 445 ggaggcttctacatcgctcctgctttcatg 474 ||||||||||||||||| || ||||||||| Sbjct: 437 ggaggcttctacatcgccccggctttcatg 466 Score = 228 bits (115), Expect = 1e-56 Identities = 139/147 (94%) Strand = Plus / Plus Query: 88 agagatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaactt 147 ||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| ||| Sbjct: 76 agagatggctgctgccttctcctccaccgtcggagctccggcttccacgccgaccagctt 135 Query: 148 cctcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctc 207 |||||| || |||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 136 cctcggcaacaagctcaagaagcaggtgacctcggcagtgaactaccatggcaagagctt 195 Query: 208 caaggccaacaggttcacagtcatggc 234 |||||||||||||||||| |||||||| Sbjct: 196 caaggccaacaggttcaccgtcatggc 222
>gb|AY312574.1| Deschampsia antarctica Rubisco activase beta form precursor (RCA2) mRNA, complete cds; nuclear gene for chloroplast product Length = 1646 Score = 254 bits (128), Expect = 2e-64 Identities = 190/210 (90%), Gaps = 1/210 (0%) Strand = Plus / Plus Query: 266 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 325 |||||||||||||| || || ||||||||||||||||||||||||||||||||||| || Sbjct: 247 gacaagtggaagggcctcgcctacgatatctccgacgaccagcaggacatcaccaggggt 306 Query: 326 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 385 ||||| ||||| ||||| | ||||||||||||| |||||| || ||||||||||||||| Sbjct: 307 aagggtatcgtcgactccttgttccaggcgcccatgggcgatggnacccacgaggccgtc 366 Query: 386 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgac-acaccatg 444 |||||||| ||||||||||||||||||||||| |||||||||||||||| |||||||| Sbjct: 367 ctcagctcntacgagtacgtcagccagggcctcaagaagtacgacttcgacaacaccatg 426 Query: 445 ggaggcttctacatcgctcctgctttcatg 474 ||||||||||||||||| || ||||||||| Sbjct: 427 ggaggcttctacatcgccccggctttcatg 456 Score = 222 bits (112), Expect = 8e-55 Identities = 138/147 (93%) Strand = Plus / Plus Query: 88 agagatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaactt 147 ||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||| ||| Sbjct: 66 agagatggctgctgccttctcctccaccgtcggagctccggcttccacgccnaccagctt 125 Query: 148 cctcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctc 207 |||||| || |||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 126 cctcggcaacaagctcaagaagcaggtgacctcggcagtgaactaccatggcaagagctt 185 Query: 208 caaggccaacaggttcacagtcatggc 234 |||||||||||||||||| |||||||| Sbjct: 186 caaggccaacaggttcaccgtcatggc 212
>dbj|AB110180.1| Oryza sativa (japonica cultivar-group) mRNA for ribulose-bisphosphate carboxylase activase large isoform precursor protein, complete cds, clone: 13YPR038 Length = 1558 Score = 234 bits (118), Expect = 2e-58 Identities = 188/210 (89%), Gaps = 1/210 (0%) Strand = Plus / Plus Query: 266 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 325 |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| ||| Sbjct: 204 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 263 Query: 326 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 385 ||||| |||| ||||| || |||||||| |||||||| || |||||||||||||||||| Sbjct: 264 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 323 Query: 386 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgac-acaccatg 444 |||||||||||||||||| |||||||||| || | | ||||||||||||| |||||||| Sbjct: 324 ctcagctcctacgagtacctcagccagggtctcagaacgtacgacttcgacaacaccatg 383 Query: 445 ggaggcttctacatcgctcctgctttcatg 474 ||||||||||||||||| |||||||||||| Sbjct: 384 ggaggcttctacatcgcccctgctttcatg 413 Score = 172 bits (87), Expect = 7e-40 Identities = 123/135 (91%) Strand = Plus / Plus Query: 90 agatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcc 149 |||||||||||||||||||||||||||| || |||||||| || || ||||||||||||| Sbjct: 25 agatggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcc 84 Query: 150 tcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctcca 209 | ||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||| Sbjct: 85 tggggaagaagctgaagaagcaggtgacatcggcggtgaactaccatggcaagagctcca 144 Query: 210 aggccaacaggttca 224 | ||||||||||| Sbjct: 145 acatcaacaggttca 159
>dbj|AK119513.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-200-F01, full insert sequence Length = 1721 Score = 234 bits (118), Expect = 2e-58 Identities = 188/210 (89%), Gaps = 1/210 (0%) Strand = Plus / Plus Query: 266 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 325 |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| ||| Sbjct: 252 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 311 Query: 326 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 385 ||||| |||| ||||| || |||||||| |||||||| || |||||||||||||||||| Sbjct: 312 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 371 Query: 386 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgac-acaccatg 444 |||||||||||||||||| |||||||||| || | | ||||||||||||| |||||||| Sbjct: 372 ctcagctcctacgagtacctcagccagggtctcagaacgtacgacttcgacaacaccatg 431 Query: 445 ggaggcttctacatcgctcctgctttcatg 474 ||||||||||||||||| |||||||||||| Sbjct: 432 ggaggcttctacatcgcccctgctttcatg 461 Score = 172 bits (87), Expect = 7e-40 Identities = 123/135 (91%) Strand = Plus / Plus Query: 90 agatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcc 149 |||||||||||||||||||||||||||| || |||||||| || || ||||||||||||| Sbjct: 73 agatggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcc 132 Query: 150 tcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctcca 209 | ||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||| Sbjct: 133 tggggaagaagctgaagaagcaggtgacatcggcggtgaactaccatggcaagagctcca 192 Query: 210 aggccaacaggttca 224 | ||||||||||| Sbjct: 193 acatcaacaggttca 207
>dbj|AK064986.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001C24, full insert sequence Length = 1680 Score = 234 bits (118), Expect = 2e-58 Identities = 188/210 (89%), Gaps = 1/210 (0%) Strand = Plus / Plus Query: 266 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 325 |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| ||| Sbjct: 241 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 300 Query: 326 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 385 ||||| |||| ||||| || |||||||| |||||||| || |||||||||||||||||| Sbjct: 301 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 360 Query: 386 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgac-acaccatg 444 |||||||||||||||||| |||||||||| || | | ||||||||||||| |||||||| Sbjct: 361 ctcagctcctacgagtacctcagccagggtctcagaacgtacgacttcgacaacaccatg 420 Query: 445 ggaggcttctacatcgctcctgctttcatg 474 ||||||||||||||||| |||||||||||| Sbjct: 421 ggaggcttctacatcgcccctgctttcatg 450 Score = 172 bits (87), Expect = 7e-40 Identities = 123/135 (91%) Strand = Plus / Plus Query: 90 agatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcc 149 |||||||||||||||||||||||||||| || |||||||| || || ||||||||||||| Sbjct: 62 agatggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcc 121 Query: 150 tcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctcca 209 | ||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||| Sbjct: 122 tggggaagaagctgaagaagcaggtgacatcggcggtgaactaccatggcaagagctcca 181 Query: 210 aggccaacaggttca 224 | ||||||||||| Sbjct: 182 acatcaacaggttca 196
>dbj|AK060847.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-E04, full insert sequence Length = 1691 Score = 234 bits (118), Expect = 2e-58 Identities = 188/210 (89%), Gaps = 1/210 (0%) Strand = Plus / Plus Query: 266 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 325 |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| ||| Sbjct: 240 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 299 Query: 326 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 385 ||||| |||| ||||| || |||||||| |||||||| || |||||||||||||||||| Sbjct: 300 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 359 Query: 386 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgac-acaccatg 444 |||||||||||||||||| |||||||||| || | | ||||||||||||| |||||||| Sbjct: 360 ctcagctcctacgagtacctcagccagggtctcagaacgtacgacttcgacaacaccatg 419 Query: 445 ggaggcttctacatcgctcctgctttcatg 474 ||||||||||||||||| |||||||||||| Sbjct: 420 ggaggcttctacatcgcccctgctttcatg 449 Score = 172 bits (87), Expect = 7e-40 Identities = 123/135 (91%) Strand = Plus / Plus Query: 90 agatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcc 149 |||||||||||||||||||||||||||| || |||||||| || || ||||||||||||| Sbjct: 61 agatggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcc 120 Query: 150 tcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctcca 209 | ||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||| Sbjct: 121 tggggaagaagctgaagaagcaggtgacatcggcggtgaactaccatggcaagagctcca 180 Query: 210 aggccaacaggttca 224 | ||||||||||| Sbjct: 181 acatcaacaggttca 195
>dbj|AK060841.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-D05, full insert sequence Length = 1470 Score = 234 bits (118), Expect = 2e-58 Identities = 188/210 (89%), Gaps = 1/210 (0%) Strand = Plus / Plus Query: 266 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 325 |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| ||| Sbjct: 24 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 83 Query: 326 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 385 ||||| |||| ||||| || |||||||| |||||||| || |||||||||||||||||| Sbjct: 84 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 143 Query: 386 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgac-acaccatg 444 |||||||||||||||||| |||||||||| || | | ||||||||||||| |||||||| Sbjct: 144 ctcagctcctacgagtacctcagccagggtctcagaacgtacgacttcgacaacaccatg 203 Query: 445 ggaggcttctacatcgctcctgctttcatg 474 ||||||||||||||||| |||||||||||| Sbjct: 204 ggaggcttctacatcgcccctgctttcatg 233
>dbj|AB034748.1| Oryza sativa OsrcaA2 mRNA for RuBisCO activase small isoform precursor, complete cds Length = 1706 Score = 234 bits (118), Expect = 2e-58 Identities = 188/210 (89%), Gaps = 1/210 (0%) Strand = Plus / Plus Query: 266 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 325 |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| ||| Sbjct: 245 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 304 Query: 326 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 385 ||||| |||| ||||| || |||||||| |||||||| || |||||||||||||||||| Sbjct: 305 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 364 Query: 386 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgac-acaccatg 444 |||||||||||||||||| |||||||||| || | | ||||||||||||| |||||||| Sbjct: 365 ctcagctcctacgagtacctcagccagggtctcagaacgtacgacttcgacaacaccatg 424 Query: 445 ggaggcttctacatcgctcctgctttcatg 474 ||||||||||||||||| |||||||||||| Sbjct: 425 ggaggcttctacatcgcccctgctttcatg 454 Score = 165 bits (83), Expect = 2e-37 Identities = 122/135 (90%) Strand = Plus / Plus Query: 90 agatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcc 149 |||||||||||||||||||||||||||| || |||||||| || || ||||||||||||| Sbjct: 66 agatggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcc 125 Query: 150 tcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctcca 209 | ||||||||||| || ||||||||||| ||||| ||||||||||||||||||||||||| Sbjct: 126 tggggaagaagctgaaaaagcaggtgacatcggcggtgaactaccatggcaagagctcca 185 Query: 210 aggccaacaggttca 224 | ||||||||||| Sbjct: 186 acatcaacaggttca 200
>dbj|AB034698.1| Oryza sativa OsrcaA1 mRNA for RuBisCO activase large isoform precursor, complete cds Length = 1623 Score = 234 bits (118), Expect = 2e-58 Identities = 188/210 (89%), Gaps = 1/210 (0%) Strand = Plus / Plus Query: 266 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 325 |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| ||| Sbjct: 239 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 298 Query: 326 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 385 ||||| |||| ||||| || |||||||| |||||||| || |||||||||||||||||| Sbjct: 299 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 358 Query: 386 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgac-acaccatg 444 |||||||||||||||||| |||||||||| || | | ||||||||||||| |||||||| Sbjct: 359 ctcagctcctacgagtacctcagccagggtctcagaacgtacgacttcgacaacaccatg 418 Query: 445 ggaggcttctacatcgctcctgctttcatg 474 ||||||||||||||||| |||||||||||| Sbjct: 419 ggaggcttctacatcgcccctgctttcatg 448 Score = 172 bits (87), Expect = 7e-40 Identities = 123/135 (91%) Strand = Plus / Plus Query: 90 agatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcc 149 |||||||||||||||||||||||||||| || |||||||| || || ||||||||||||| Sbjct: 60 agatggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcc 119 Query: 150 tcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctcca 209 | ||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||| Sbjct: 120 tggggaagaagctgaagaagcaggtgacatcggcggtgaactaccatggcaagagctcca 179 Query: 210 aggccaacaggttca 224 | ||||||||||| Sbjct: 180 acatcaacaggttca 194
>gb|U74321.1|OSU74321 Oryza sativa ribulose-1,5-bisphosphate carboxylase/oxygenase activase (rca) mRNA, complete cds Length = 1675 Score = 226 bits (114), Expect = 5e-56 Identities = 187/210 (89%), Gaps = 1/210 (0%) Strand = Plus / Plus Query: 266 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 325 |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| ||| Sbjct: 212 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 271 Query: 326 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 385 ||||| |||| ||||| || |||||||| |||||||| || |||||||||||||||||| Sbjct: 272 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 331 Query: 386 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgac-acaccatg 444 |||||||||||||||||| |||||||||| || | | ||||||||||||| |||||||| Sbjct: 332 ctcagctcctacgagtacctcagccagggtctcagaacgtacgacttcgacaacaccatg 391 Query: 445 ggaggcttctacatcgctcctgctttcatg 474 ||||||||||||||||| ||| |||||||| Sbjct: 392 ggaggcttctacatcgccccttctttcatg 421 Score = 172 bits (87), Expect = 7e-40 Identities = 123/135 (91%) Strand = Plus / Plus Query: 90 agatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcc 149 |||||||||||||||||||||||||||| || |||||||| || || ||||||||||||| Sbjct: 33 agatggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcc 92 Query: 150 tcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctcca 209 | ||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||| Sbjct: 93 tggggaagaagctgaagaagcaggtgacatcggcggtgaactaccatggcaagagctcca 152 Query: 210 aggccaacaggttca 224 | ||||||||||| Sbjct: 153 acatcaacaggttca 167
>gb|AF251264.1|AF251264 Triticum aestivum ribulose bisphosphate carboxylase activase B (RcaB) mRNA, complete cds; nuclear gene for chloroplast product Length = 1525 Score = 214 bits (108), Expect = 2e-52 Identities = 160/176 (90%), Gaps = 1/176 (0%) Strand = Plus / Plus Query: 271 gtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 330 |||||||||||| || ||||| |||||||| ||||||||||||||||| || ||||| || Sbjct: 217 gtggaagggtctcgcttacgacatctccgatgaccagcaggacatcacgagggggaaagg 276 Query: 331 catcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtcctcag 390 |||||||||||| || |||||||| |||| |||||||||||||||||||||| |||| || Sbjct: 277 catcgtggactccctgttccaggcccccatgggcgacggcacccacgaggccatcctgag 336 Query: 391 ctcctacgagtacgtcagccagggcctgcggaagtacgacttcgac-acaccatgg 445 ||||||||||||| |||||||||||||||| ||||||||||||||| ||||||||| Sbjct: 337 ctcctacgagtacatcagccagggcctgcgcaagtacgacttcgacaacaccatgg 392 Score = 77.8 bits (39), Expect = 3e-11 Identities = 72/83 (86%) Strand = Plus / Plus Query: 91 gatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcct 150 ||||||| |||| ||||| |||||||| || |||||||| || || ||||||| |||||| Sbjct: 25 gatggcttctgctttctcgtccaccgttggagctccggcgtcgaccccgaccaccttcct 84 Query: 151 cgggaagaagctcaagaagcagg 173 |||||||||| | |||||||||| Sbjct: 85 cgggaagaaggtgaagaagcagg 107
>gb|M55448.1|BLYRCAB Hordeum vulgare rubisco activase (RcaB) mRNA, complete cds Length = 1656 Score = 214 bits (108), Expect = 2e-52 Identities = 160/176 (90%), Gaps = 1/176 (0%) Strand = Plus / Plus Query: 271 gtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 330 |||||||||||| || ||||| ||||| |||||||||||||||||||| | ||||| || Sbjct: 370 gtggaagggtctggcctacgacatctcggacgaccagcaggacatcactcgggggaaagg 429 Query: 331 catcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtcctcag 390 |||||||||||| || |||||||| |||| |||||||||||||||||||||| |||| || Sbjct: 430 catcgtggactccctgttccaggcccccatgggcgacggcacccacgaggccatcctaag 489 Query: 391 ctcctacgagtacgtcagccagggcctgcggaagtacgacttcgac-acaccatgg 445 ||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| Sbjct: 490 ctcctacgagtacatcagccagggcctgcggaagtacgacttcgacaacaccatgg 545
>gb|AC137064.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0003C04 map S10003, complete sequence Length = 119238 Score = 176 bits (89), Expect = 4e-41 Identities = 134/149 (89%) Strand = Plus / Minus Query: 266 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 325 |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| ||| Sbjct: 109706 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 109647 Query: 326 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 385 ||||| |||| ||||| || |||||||| |||||||| || |||||||||||||||||| Sbjct: 109646 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 109587 Query: 386 ctcagctcctacgagtacgtcagccaggg 414 |||||||||||||||||| |||||||||| Sbjct: 109586 ctcagctcctacgagtacctcagccaggg 109558 Score = 125 bits (63), Expect = 1e-25 Identities = 99/111 (89%) Strand = Plus / Minus Query: 271 gtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 330 ||||||||| || |||||||| ||||||||||||||||||||||||||||| |||||||| Sbjct: 113205 gtggaagggactcgcgtacgacatctccgacgaccagcaggacatcaccagggggaaggg 113146 Query: 331 catcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggc 381 | |||| ||||| || |||||||| |||| ||| || |||||||||||||| Sbjct: 113145 cctcgtcgactccctgttccaggctcccatgggtgatggcacccacgaggc 113095 Score = 119 bits (60), Expect = 9e-24 Identities = 81/88 (92%) Strand = Plus / Minus Query: 137 ccgaccaacttcctcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccat 196 |||||||||||||| ||||||||||| |||||||||||||| ||||| |||||||||||| Sbjct: 109838 ccgaccaacttcctggggaagaagctgaagaagcaggtgacatcggcggtgaactaccat 109779 Query: 197 ggcaagagctccaaggccaacaggttca 224 |||||||||||||| ||||||||||| Sbjct: 109778 ggcaagagctccaacatcaacaggttca 109751 Score = 79.8 bits (40), Expect = 7e-12 Identities = 50/52 (96%), Gaps = 1/52 (1%) Strand = Plus / Minus Query: 424 gtacgacttcgaca-caccatgggaggcttctacatcgctcctgctttcatg 474 |||||||||||||| |||||||||||||||||||||||| |||||||||||| Sbjct: 109435 gtacgacttcgacaacaccatgggaggcttctacatcgcccctgctttcatg 109384 Score = 61.9 bits (31), Expect = 2e-06 Identities = 37/39 (94%) Strand = Plus / Minus Query: 90 agatggctgctgccttctcctccaccgtcggggctccgg 128 |||||||||||||||||||||||||||| || ||||||| Sbjct: 109984 agatggctgctgccttctcctccaccgttggagctccgg 109946
>gb|AC133008.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0026K20 map S10559, complete sequence Length = 115996 Score = 176 bits (89), Expect = 4e-41 Identities = 134/149 (89%) Strand = Plus / Minus Query: 266 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 325 |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| ||| Sbjct: 31583 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 31524 Query: 326 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 385 ||||| |||| ||||| || |||||||| |||||||| || |||||||||||||||||| Sbjct: 31523 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 31464 Query: 386 ctcagctcctacgagtacgtcagccaggg 414 |||||||||||||||||| |||||||||| Sbjct: 31463 ctcagctcctacgagtacctcagccaggg 31435 Score = 125 bits (63), Expect = 1e-25 Identities = 99/111 (89%) Strand = Plus / Minus Query: 271 gtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 330 ||||||||| || |||||||| ||||||||||||||||||||||||||||| |||||||| Sbjct: 35082 gtggaagggactcgcgtacgacatctccgacgaccagcaggacatcaccagggggaaggg 35023 Query: 331 catcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggc 381 | |||| ||||| || |||||||| |||| ||| || |||||||||||||| Sbjct: 35022 cctcgtcgactccctgttccaggctcccatgggtgatggcacccacgaggc 34972 Score = 119 bits (60), Expect = 9e-24 Identities = 81/88 (92%) Strand = Plus / Minus Query: 137 ccgaccaacttcctcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccat 196 |||||||||||||| ||||||||||| |||||||||||||| ||||| |||||||||||| Sbjct: 31715 ccgaccaacttcctggggaagaagctgaagaagcaggtgacatcggcggtgaactaccat 31656 Query: 197 ggcaagagctccaaggccaacaggttca 224 |||||||||||||| ||||||||||| Sbjct: 31655 ggcaagagctccaacatcaacaggttca 31628 Score = 79.8 bits (40), Expect = 7e-12 Identities = 50/52 (96%), Gaps = 1/52 (1%) Strand = Plus / Minus Query: 424 gtacgacttcgaca-caccatgggaggcttctacatcgctcctgctttcatg 474 |||||||||||||| |||||||||||||||||||||||| |||||||||||| Sbjct: 31312 gtacgacttcgacaacaccatgggaggcttctacatcgcccctgctttcatg 31261 Score = 61.9 bits (31), Expect = 2e-06 Identities = 37/39 (94%) Strand = Plus / Minus Query: 90 agatggctgctgccttctcctccaccgtcggggctccgg 128 |||||||||||||||||||||||||||| || ||||||| Sbjct: 31861 agatggctgctgccttctcctccaccgttggagctccgg 31823
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 176 bits (89), Expect = 4e-41 Identities = 134/149 (89%) Strand = Plus / Minus Query: 266 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 325 |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| ||| Sbjct: 28304845 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 28304786 Query: 326 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 385 ||||| |||| ||||| || |||||||| |||||||| || |||||||||||||||||| Sbjct: 28304785 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 28304726 Query: 386 ctcagctcctacgagtacgtcagccaggg 414 |||||||||||||||||| |||||||||| Sbjct: 28304725 ctcagctcctacgagtacctcagccaggg 28304697 Score = 125 bits (63), Expect = 1e-25 Identities = 99/111 (89%) Strand = Plus / Minus Query: 271 gtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 330 ||||||||| || |||||||| ||||||||||||||||||||||||||||| |||||||| Sbjct: 28308344 gtggaagggactcgcgtacgacatctccgacgaccagcaggacatcaccagggggaaggg 28308285 Query: 331 catcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggc 381 | |||| ||||| || |||||||| |||| ||| || |||||||||||||| Sbjct: 28308284 cctcgtcgactccctgttccaggctcccatgggtgatggcacccacgaggc 28308234 Score = 119 bits (60), Expect = 9e-24 Identities = 81/88 (92%) Strand = Plus / Minus Query: 137 ccgaccaacttcctcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccat 196 |||||||||||||| ||||||||||| |||||||||||||| ||||| |||||||||||| Sbjct: 28304977 ccgaccaacttcctggggaagaagctgaagaagcaggtgacatcggcggtgaactaccat 28304918 Query: 197 ggcaagagctccaaggccaacaggttca 224 |||||||||||||| ||||||||||| Sbjct: 28304917 ggcaagagctccaacatcaacaggttca 28304890 Score = 79.8 bits (40), Expect = 7e-12 Identities = 50/52 (96%), Gaps = 1/52 (1%) Strand = Plus / Minus Query: 424 gtacgacttcgaca-caccatgggaggcttctacatcgctcctgctttcatg 474 |||||||||||||| |||||||||||||||||||||||| |||||||||||| Sbjct: 28304574 gtacgacttcgacaacaccatgggaggcttctacatcgcccctgctttcatg 28304523 Score = 61.9 bits (31), Expect = 2e-06 Identities = 37/39 (94%) Strand = Plus / Minus Query: 90 agatggctgctgccttctcctccaccgtcggggctccgg 128 |||||||||||||||||||||||||||| || ||||||| Sbjct: 28305123 agatggctgctgccttctcctccaccgttggagctccgg 28305085
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 176 bits (89), Expect = 4e-41 Identities = 134/149 (89%) Strand = Plus / Minus Query: 266 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 325 |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| ||| Sbjct: 28287294 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 28287235 Query: 326 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 385 ||||| |||| ||||| || |||||||| |||||||| || |||||||||||||||||| Sbjct: 28287234 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 28287175 Query: 386 ctcagctcctacgagtacgtcagccaggg 414 |||||||||||||||||| |||||||||| Sbjct: 28287174 ctcagctcctacgagtacctcagccaggg 28287146 Score = 125 bits (63), Expect = 1e-25 Identities = 99/111 (89%) Strand = Plus / Minus Query: 271 gtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 330 ||||||||| || |||||||| ||||||||||||||||||||||||||||| |||||||| Sbjct: 28290793 gtggaagggactcgcgtacgacatctccgacgaccagcaggacatcaccagggggaaggg 28290734 Query: 331 catcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggc 381 | |||| ||||| || |||||||| |||| ||| || |||||||||||||| Sbjct: 28290733 cctcgtcgactccctgttccaggctcccatgggtgatggcacccacgaggc 28290683 Score = 119 bits (60), Expect = 9e-24 Identities = 81/88 (92%) Strand = Plus / Minus Query: 137 ccgaccaacttcctcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccat 196 |||||||||||||| ||||||||||| |||||||||||||| ||||| |||||||||||| Sbjct: 28287426 ccgaccaacttcctggggaagaagctgaagaagcaggtgacatcggcggtgaactaccat 28287367 Query: 197 ggcaagagctccaaggccaacaggttca 224 |||||||||||||| ||||||||||| Sbjct: 28287366 ggcaagagctccaacatcaacaggttca 28287339 Score = 79.8 bits (40), Expect = 7e-12 Identities = 50/52 (96%), Gaps = 1/52 (1%) Strand = Plus / Minus Query: 424 gtacgacttcgaca-caccatgggaggcttctacatcgctcctgctttcatg 474 |||||||||||||| |||||||||||||||||||||||| |||||||||||| Sbjct: 28287023 gtacgacttcgacaacaccatgggaggcttctacatcgcccctgctttcatg 28286972 Score = 61.9 bits (31), Expect = 2e-06 Identities = 37/39 (94%) Strand = Plus / Minus Query: 90 agatggctgctgccttctcctccaccgtcggggctccgg 128 |||||||||||||||||||||||||||| || ||||||| Sbjct: 28287572 agatggctgctgccttctcctccaccgttggagctccgg 28287534
>dbj|AK104332.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-032-F04, full insert sequence Length = 1682 Score = 172 bits (87), Expect = 7e-40 Identities = 123/135 (91%) Strand = Plus / Plus Query: 90 agatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcc 149 |||||||||||||||||||||||||||| || |||||||| || || ||||||||||||| Sbjct: 61 agatggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcc 120 Query: 150 tcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctcca 209 | ||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||| Sbjct: 121 tggggaagaagctgaagaagcaggtgacatcggcggtgaactaccatggcaagagctcca 180 Query: 210 aggccaacaggttca 224 | ||||||||||| Sbjct: 181 acatcaacaggttca 195 Score = 99.6 bits (50), Expect = 8e-18 Identities = 78/86 (90%), Gaps = 1/86 (1%) Strand = Plus / Plus Query: 390 gctcctacgagtacgtcagccagggcctgcggaagtacgacttcgaca-caccatgggag 448 |||||||||||||| |||||||||| || | | |||||||||||||| ||||||||||| Sbjct: 327 gctcctacgagtacctcagccagggtctcagaacgtacgacttcgacaacaccatgggag 386 Query: 449 gcttctacatcgctcctgctttcatg 474 ||||||||||||| |||||||||||| Sbjct: 387 gcttctacatcgcccctgctttcatg 412 Score = 89.7 bits (45), Expect = 8e-15 Identities = 78/89 (87%) Strand = Plus / Plus Query: 266 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 325 |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| ||| Sbjct: 240 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 299 Query: 326 aagggcatcgtggactcgctcttccaggc 354 ||||| |||| ||||| || |||||||| Sbjct: 300 aagggtttcgtcgactcccttttccaggc 328
>gb|AF084478.3| Zea mays ribulose-1,5-bisphosphate carboxylase/oxygenase activase precursor (rca1) mRNA, complete cds Length = 1424 Score = 133 bits (67), Expect = 6e-28 Identities = 130/151 (86%) Strand = Plus / Plus Query: 266 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 325 |||| ||||||||| || || ||||| ||||| ||||||||||||||||||||||| || Sbjct: 213 gacaggtggaagggcctggcctacgacatctcggacgaccagcaggacatcaccaggggc 272 Query: 326 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 385 |||||| |||| ||| |||||||||||||| | ||| ||||||||||||| ||||| Sbjct: 273 aagggcctcgtcgacaacctcttccaggcgcctatgggggacggcacccacgtcgccgtg 332 Query: 386 ctcagctcctacgagtacgtcagccagggcc 416 |||||||||||||| ||| |||||||||||| Sbjct: 333 ctcagctcctacgactacatcagccagggcc 363 Score = 91.7 bits (46), Expect = 2e-15 Identities = 107/127 (84%), Gaps = 9/127 (7%) Strand = Plus / Plus Query: 92 atggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaa------c 145 ||||| || |||||||||||||||||||| |||||||| || || ||||||| | Sbjct: 21 atggcggccgccttctcctccaccgtcggagctccggcctccaccccgaccaggagcagc 80 Query: 146 ttcctcgggaagaagctcaagaagc---aggtgacctcggccgtgaactaccatggcaag 202 |||||||||||||||||||| |||| ||||| || ||||||||| ||||||||||||| Sbjct: 81 ttcctcgggaagaagctcaacaagccgcaggtgtccgcggccgtgacctaccatggcaag 140 Query: 203 agctcca 209 ||||||| Sbjct: 141 agctcca 147
>gb|AF338240.1|AF338240 Zantedeschia aethiopica rubisco activase (rca4) mRNA, partial cds Length = 1674 Score = 111 bits (56), Expect = 2e-21 Identities = 95/108 (87%) Strand = Plus / Plus Query: 302 gaccagcaggacatcaccagagggaagggcatcgtggactcgctcttccaggcgcccacg 361 |||||||||||||||||||| ||||||||||| || ||||| || |||||||| |||| | Sbjct: 235 gaccagcaggacatcaccagggggaagggcatggtcgactccctgttccaggctcccatg 294 Query: 362 ggcgacggcacccacgaggccgtcctcagctcctacgagtacgtcagc 409 |||||||| |||||| | ||||||| ||||||||||||||| ||||| Sbjct: 295 ggcgacggaacccacaaccccgtcctgagctcctacgagtacatcagc 342
>gb|AF338239.1|AF338239 Zantedeschia aethiopica rubisco activase (rca3) mRNA, partial cds Length = 1494 Score = 111 bits (56), Expect = 2e-21 Identities = 95/108 (87%) Strand = Plus / Plus Query: 302 gaccagcaggacatcaccagagggaagggcatcgtggactcgctcttccaggcgcccacg 361 |||||||||||||||||||| ||||||||||| || ||||| || |||||||| |||| | Sbjct: 98 gaccagcaggacatcaccagggggaagggcatggtcgactccctgttccaggctcccatg 157 Query: 362 ggcgacggcacccacgaggccgtcctcagctcctacgagtacgtcagc 409 |||||||| |||||| | ||||||| ||||||||||||||| ||||| Sbjct: 158 ggcgacggaacccacaaccccgtcctgagctcctacgagtacatcagc 205
>gb|AF338237.1|AF338237 Zantedeschia aethiopica rubisco activase (rca1) mRNA, partial cds Length = 1597 Score = 111 bits (56), Expect = 2e-21 Identities = 95/108 (87%) Strand = Plus / Plus Query: 302 gaccagcaggacatcaccagagggaagggcatcgtggactcgctcttccaggcgcccacg 361 |||||||||||||||||||| ||||||||||| || ||||| || |||||||| |||| | Sbjct: 128 gaccagcaggacatcaccagggggaagggcatggtcgactccctgttccaggctcccatg 187 Query: 362 ggcgacggcacccacgaggccgtcctcagctcctacgagtacgtcagc 409 |||||||| |||||| | ||||||| ||||||||||||||| ||||| Sbjct: 188 ggcgacggaacccacaaccccgtcctgagctcctacgagtacatcagc 235
>gb|AY110044.1| Zea mays CL1146_1 mRNA sequence Length = 1750 Score = 111 bits (56), Expect = 2e-21 Identities = 126/151 (83%) Strand = Plus / Plus Query: 266 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 325 |||| ||||||||| || || ||||| ||||| ||||||||||||||||||||||| || Sbjct: 213 gacaggtggaagggcctggcctacgacatctcggacgaccagcaggacatcaccaggggc 272 Query: 326 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 385 |||||| |||| ||| |||||||||||||| | |||||||||||| ||||| Sbjct: 273 aagggcctcgtcgacaacctcttccaggcgcctatnnnnnacggcacccacgtcgccgtg 332 Query: 386 ctcagctcctacgagtacgtcagccagggcc 416 |||||||||||||| ||| |||||||||||| Sbjct: 333 ctcagctcctacgactacatcagccagggcc 363 Score = 91.7 bits (46), Expect = 2e-15 Identities = 107/127 (84%), Gaps = 9/127 (7%) Strand = Plus / Plus Query: 92 atggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaa------c 145 ||||| || |||||||||||||||||||| |||||||| || || ||||||| | Sbjct: 21 atggcggccgccttctcctccaccgtcggagctccggcctccaccccgaccaggagcagc 80 Query: 146 ttcctcgggaagaagctcaagaagc---aggtgacctcggccgtgaactaccatggcaag 202 |||||||||||||||||||| |||| ||||| || ||||||||| ||||||||||||| Sbjct: 81 ttcctcgggaagaagctcaacaagccgcaggtgtccgcggccgtgacctaccatggcaag 140 Query: 203 agctcca 209 ||||||| Sbjct: 141 agctcca 147
>gb|AF329934.1|AF329934 Gossypium hirsutum ribulose-1,5-bisphosphate carboxylase/oxygenase activase 1 mRNA, complete cds Length = 1559 Score = 63.9 bits (32), Expect = 4e-07 Identities = 50/56 (89%) Strand = Plus / Plus Query: 272 tggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaa 327 |||||||||||||| || ||||||||||| ||||| || ||||| ||||||||||| Sbjct: 280 tggaagggtcttgcttatgatatctccgatgaccaacaagacattaccagagggaa 335
>emb|Z21794.1|MDRBSCACA M.domestica ribulose-1,5-bisphosphate carboxylase/oxygenase activase mRNA Length = 1853 Score = 56.0 bits (28), Expect = 1e-04 Identities = 52/60 (86%) Strand = Plus / Plus Query: 295 ctccgacgaccagcaggacatcaccagagggaagggcatcgtggactcgctcttccaggc 354 |||||||||||| || |||||||| ||||| ||||| | |||||||| ||||||||||| Sbjct: 319 ctccgacgaccaacaagacatcacaagaggaaagggtaaggtggactccctcttccaggc 378
>gb|AF126870.2|AF126870 Vigna radiata rubisco activase (Rca) mRNA, complete cds; nuclear gene for chloroplast product Length = 1671 Score = 54.0 bits (27), Expect = 4e-04 Identities = 51/59 (86%) Strand = Plus / Plus Query: 272 tggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 330 ||||||||||| || ||||||||||| || ||||| || |||||||| || |||||||| Sbjct: 295 tggaagggtctggcctacgatatctctgatgaccaacaagacatcacaagggggaaggg 353
>gb|BT012795.1| Lycopersicon esculentum clone 113794R, mRNA sequence Length = 1519 Score = 48.1 bits (24), Expect = 0.026 Identities = 24/24 (100%) Strand = Plus / Plus Query: 451 ttctacatcgctcctgctttcatg 474 |||||||||||||||||||||||| Sbjct: 473 ttctacatcgctcctgctttcatg 496
>gb|U35111.1|NTU35111 Nicotiana tabacum rubisco activase precursor (Rca) mRNA, complete cds Length = 1674 Score = 48.1 bits (24), Expect = 0.026 Identities = 24/24 (100%) Strand = Plus / Plus Query: 451 ttctacatcgctcctgctttcatg 474 |||||||||||||||||||||||| Sbjct: 456 ttctacatcgctcctgctttcatg 479
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 46.1 bits (23), Expect = 0.10 Identities = 23/23 (100%) Strand = Plus / Minus Query: 297 ccgacgaccagcaggacatcacc 319 ||||||||||||||||||||||| Sbjct: 1452088 ccgacgaccagcaggacatcacc 1452066
>gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome Length = 5650368 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Minus Query: 339 actcgctcttccaggcgcccac 360 |||||||||||||||||||||| Sbjct: 2553524 actcgctcttccaggcgcccac 2553503
>gb|AE015925.1| Chlamydophila caviae GPIC, complete genome Length = 1173390 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Plus Query: 154 gaagaagctcaagaagcaggtg 175 |||||||||||||||||||||| Sbjct: 632957 gaagaagctcaagaagcaggtg 632978
>emb|CR701838.2|CNS0G4HM Tetraodon nigroviridis full-length cDNA Length = 929 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 82 cagcacagagatggctgctgc 102 ||||||||||||||||||||| Sbjct: 531 cagcacagagatggctgctgc 511
>emb|CR686472.2|CNS0FSMS Tetraodon nigroviridis full-length cDNA Length = 939 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 82 cagcacagagatggctgctgc 102 ||||||||||||||||||||| Sbjct: 541 cagcacagagatggctgctgc 521
>emb|CR681817.2|CNS0FP1H Tetraodon nigroviridis full-length cDNA Length = 992 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 82 cagcacagagatggctgctgc 102 ||||||||||||||||||||| Sbjct: 595 cagcacagagatggctgctgc 575
>emb|CR680161.1|CNS0FNRH Tetraodon nigroviridis full-length cDNA Length = 1318 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 82 cagcacagagatggctgctgc 102 ||||||||||||||||||||| Sbjct: 932 cagcacagagatggctgctgc 912
>emb|CR675309.2|CNS0FK1F Tetraodon nigroviridis full-length cDNA Length = 1006 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 82 cagcacagagatggctgctgc 102 ||||||||||||||||||||| Sbjct: 609 cagcacagagatggctgctgc 589
>gb|AF338238.1|AF338238 Zantedeschia aethiopica rubisco activase (rca2) mRNA, partial cds Length = 1436 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Plus Query: 381 ccgtcctcagctcctacgagtacgtcagc 409 ||||||| ||||||||||||||| ||||| Sbjct: 13 ccgtcctgagctcctacgagtacatcagc 41
>emb|BX649334.5| Zebrafish DNA sequence from clone DKEYP-6A3 in linkage group 22, complete sequence Length = 184977 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Minus Query: 13 cagcagtcattcatcactgatcaccagca 41 |||||||||||| ||||| |||||||||| Sbjct: 34983 cagcagtcattcttcacttatcaccagca 34955
>gb|CP000002.2| Bacillus licheniformis ATCC 14580, complete genome Length = 4222334 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 229 catggcagcggagaacatcg 248 |||||||||||||||||||| Sbjct: 1379894 catggcagcggagaacatcg 1379875
>gb|AY820769.1| Homo sapiens HCV NS5A trans-regulated protein 13 mRNA, complete cds Length = 2103 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 93 tggctgctgccttctcctcc 112 |||||||||||||||||||| Sbjct: 715 tggctgctgccttctcctcc 696
>gb|AE010322.1| Methanopyrus kandleri AV19 section 21 of 157 of the complete genome Length = 10732 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 293 atctccgacgaccagcaggacatc 316 |||||| ||||||||||||||||| Sbjct: 8676 atctcccacgaccagcaggacatc 8653
>gb|CP000110.1| Synechococcus sp. CC9605, complete genome Length = 2510659 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 233 gcagcggagaacatcgacga 252 |||||||||||||||||||| Sbjct: 173412 gcagcggagaacatcgacga 173393
>ref|XM_520373.1| PREDICTED: Pan troglodytes LOC464867 (LOC464867), mRNA Length = 1685 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 356 cccacgggcgacggcacccacgag 379 ||||||||||||| |||||||||| Sbjct: 1369 cccacgggcgacgtcacccacgag 1392
>ref|NM_001003053.1| Canis familiaris androgen receptor (dihydrotestosterone receptor; testicular feminization; spinal and bulbar muscular atrophy; Kennedy disease) (AR), mRNA Length = 3577 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 198 gcaagagctccaaggccaac 217 |||||||||||||||||||| Sbjct: 3271 gcaagagctccaaggccaac 3290
>ref|NM_004741.1| Homo sapiens nucleolar and coiled-body phosphoprotein 1 (NOLC1), mRNA Length = 2502 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 93 tggctgctgccttctcctcc 112 |||||||||||||||||||| Sbjct: 766 tggctgctgccttctcctcc 747
>gb|AC125735.1| Leishmania major strain Friedlin chromosome 3, complete sequence Length = 384518 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 99 ctgccttctcctccaccgtc 118 |||||||||||||||||||| Sbjct: 240861 ctgccttctcctccaccgtc 240842
>gb|AE017333.1| Bacillus licheniformis DSM 13, complete genome Length = 4222645 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 229 catggcagcggagaacatcg 248 |||||||||||||||||||| Sbjct: 1380755 catggcagcggagaacatcg 1380736
>ref|NM_017617.2| Homo sapiens Notch homolog 1, translocation-associated (Drosophila) (NOTCH1), mRNA Length = 9312 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 356 cccacgggcgacggcacccacgag 379 ||||||||||||| |||||||||| Sbjct: 703 cccacgggcgacgtcacccacgag 726
>gb|BC001883.1| Homo sapiens nucleolar and coiled-body phosphoprotein 1, mRNA (cDNA clone MGC:1494 IMAGE:3533568), complete cds Length = 2464 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 93 tggctgctgccttctcctcc 112 |||||||||||||||||||| Sbjct: 722 tggctgctgccttctcctcc 703
>ref|XM_582842.2| PREDICTED: Bos taurus similar to chromodomain helicase DNA binding protein 4 (LOC506402), mRNA Length = 7219 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 96 ctgctgccttctcctccacc 115 |||||||||||||||||||| Sbjct: 5008 ctgctgccttctcctccacc 4989
>gb|DQ483716.1| Gymnogyps californianus clone 139F microsatellite sequence Length = 457 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 96 ctgctgccttctcctccacc 115 |||||||||||||||||||| Sbjct: 65 ctgctgccttctcctccacc 46
>gb|DQ483952.1| Gymnogyps californianus clone 118G microsatellite sequence Length = 470 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 96 ctgctgccttctcctccacc 115 |||||||||||||||||||| Sbjct: 65 ctgctgccttctcctccacc 46
>ref|XM_381225.1| Gibberella zeae PH-1 chromosome 1 hypothetical protein (FG01049.1) partial mRNA Length = 22443 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 154 gaagaagctcaagaagcagg 173 |||||||||||||||||||| Sbjct: 8385 gaagaagctcaagaagcagg 8404
>gb|BC006769.2| Homo sapiens nucleolar and coiled-body phosphoprotein 1, mRNA (cDNA clone MGC:5049 IMAGE:2900024), complete cds Length = 3237 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 93 tggctgctgccttctcctcc 112 |||||||||||||||||||| Sbjct: 232 tggctgctgccttctcctcc 213
>gb|AC115709.11| Mus musculus chromosome 12, clone RP23-76M3, complete sequence Length = 193170 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 448 ggcttctacatcgctcctgctttc 471 ||||||| |||||||||||||||| Sbjct: 147044 ggcttctgcatcgctcctgctttc 147067
>emb|AL592301.14| Human DNA sequence from clone RP11-413M3 on chromosome 9 Contains the 3' end of the gene for activator of G-protein signalling 3 (AGS3), two novel genes, the CARD9 gene for caspase recruitment domain family member 9, the SNAPC4 gene for a 190kDa small nuclear RNA activating complex polypeptide 4, the SDCCAG3 gene for serologically defined colon cancer antigen 3, the INPP5E gene for a 72kDa inositol polyphosphate-5-phosphatase, the gene for phosphatidylinositol polyphosphate 5-phosphatase type IV (PPI5PIV), a novel gene (KIAA0310), the 3' end of the NOTCH1 gene for Notch homolog 1 translocation-associated (Drosophila) and twenty CpG islands, complete sequence Length = 188462 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 356 cccacgggcgacggcacccacgag 379 ||||||||||||| |||||||||| Sbjct: 166513 cccacgggcgacgtcacccacgag 166490
>emb|AL500527.19| Human DNA sequence from clone RP11-302K17 on chromosome 10 Contains the gene for Hermansky-Pudlak syndrome-6 protein (HPS6), two pseudogenes for transcription elongation factor B (SIII), polypeptide 1, the LDB1 gene for LIM domain binding 1, a novel gene (KIAA0595), the NOLC1 gene for nucleolar and coiled-body phosphoprotein 1 and five CpG islands, complete sequence Length = 158434 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 93 tggctgctgccttctcctcc 112 |||||||||||||||||||| Sbjct: 101054 tggctgctgccttctcctcc 101035
>gb|BT009750.1| Synthetic construct Homo sapiens nucleolar and coiled-body phosphoprotein 1 mRNA, partial cds Length = 2103 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 93 tggctgctgccttctcctcc 112 |||||||||||||||||||| Sbjct: 715 tggctgctgccttctcctcc 696
>emb|CR354552.8| Zebrafish DNA sequence from clone CH211-213D12 in linkage group 8, complete sequence Length = 25495 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 9 gcagcagcagtcattcatca 28 |||||||||||||||||||| Sbjct: 6648 gcagcagcagtcattcatca 6667
>gb|AC104422.4| Homo sapiens chromosome 18, clone RP11-260B14, complete sequence Length = 147210 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 318 ccagagggaagggcatcgtg 337 |||||||||||||||||||| Sbjct: 35948 ccagagggaagggcatcgtg 35967
>gb|AC116991.2| Homo sapiens chromosome 3 clone RP11-264M9, complete sequence Length = 152794 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 7 gagcagcagcagtcattcat 26 |||||||||||||||||||| Sbjct: 150473 gagcagcagcagtcattcat 150492
>emb|CR602162.1| full-length cDNA clone CS0DI026YK04 of Placenta Cot 25-normalized of Homo sapiens (human) Length = 1812 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 93 tggctgctgccttctcctcc 112 |||||||||||||||||||| Sbjct: 717 tggctgctgccttctcctcc 698
>dbj|AK056755.1| Homo sapiens cDNA FLJ32193 fis, clone PLACE6002345, highly similar to H.sapiens mRNA for nucleolar phosphoprotein p130 Length = 2288 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 93 tggctgctgccttctcctcc 112 |||||||||||||||||||| Sbjct: 570 tggctgctgccttctcctcc 551
>gb|AC091237.6| Mus musculus Strain C57BL7/J Chromosome 14 RP23-470F15, complete sequence Length = 177104 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 86 acagagatggctgctgcctt 105 |||||||||||||||||||| Sbjct: 121162 acagagatggctgctgcctt 121143
>dbj|AB161712.1| Zoysia tenuifolia mRNA for betaine aldehyde dehydrogenase, complete cds, clone:ZBD1 Length = 1892 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 4 tttgagcagcagcagtcatt 23 |||||||||||||||||||| Sbjct: 888 tttgagcagcagcagtcatt 869
>dbj|AB161708.1| Zoysia tenuifolia mRNA for betaine aldehyde dehydrogenase, complete cds, clone:10 Length = 1871 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 4 tttgagcagcagcagtcatt 23 |||||||||||||||||||| Sbjct: 884 tttgagcagcagcagtcatt 865
>dbj|AB161707.1| Zoysia tenuifolia mRNA for betaine aldehyde dehydrogenase, complete cds, clone:9 Length = 1822 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 4 tttgagcagcagcagtcatt 23 |||||||||||||||||||| Sbjct: 818 tttgagcagcagcagtcatt 799
>gb|AC104302.2| Homo sapiens chromosome 3 clone RP11-379L20, complete sequence Length = 206872 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 7 gagcagcagcagtcattcat 26 |||||||||||||||||||| Sbjct: 148117 gagcagcagcagtcattcat 148098
>gb|AF197950.1| Canis familiaris androgen receptor (AR) mRNA, complete cds Length = 3577 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 198 gcaagagctccaaggccaac 217 |||||||||||||||||||| Sbjct: 3271 gcaagagctccaaggccaac 3290
>gb|AC100806.2| Homo sapiens chromosome 18, clone CTB-2341H11, complete sequence Length = 81641 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 318 ccagagggaagggcatcgtg 337 |||||||||||||||||||| Sbjct: 47211 ccagagggaagggcatcgtg 47230
>gb|AC154546.2| Mus musculus BAC clone RP23-431I7 from chromosome 16, complete sequence Length = 180261 Score = 40.1 bits (20), Expect = 6.4 Identities = 35/40 (87%) Strand = Plus / Plus Query: 69 aaggtcgaccaagcagcacagagatggctgctgccttctc 108 |||||| ||||| ||||||| || ||||||||||||||| Sbjct: 111680 aaggtccaccaatgagcacagtgagggctgctgccttctc 111719
>gb|AF329935.1|AF329935 Gossypium hirsutum ribulose-1,5-bisphosphate carboxylase/oxygenase activase 2 mRNA, partial cds Length = 1462 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 451 ttctacatcgctcctgctttcatg 474 ||||||||||||||||| |||||| Sbjct: 275 ttctacatcgctcctgcattcatg 298
>gb|AF308602.1|AF308602 Homo sapiens NOTCH 1 (N1) mRNA, complete cds Length = 7693 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 356 cccacgggcgacggcacccacgag 379 ||||||||||||| |||||||||| Sbjct: 703 cccacgggcgacgtcacccacgag 726
>gb|AC019012.4|AC019012 Genomic Sequence For Arabidopsis thaliana Clone T3J11 From Chromosome V, complete sequence Length = 130299 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 208 caaggccaacaggttcacagtcat 231 ||||||||||||||||| |||||| Sbjct: 13824 caaggccaacaggttcagagtcat 13847
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome Length = 7036071 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 289 cgatatctccgacgaccagc 308 |||||||||||||||||||| Sbjct: 4182002 cgatatctccgacgaccagc 4181983
>gb|AY891983.1| Synthetic construct Homo sapiens clone FLH024209.01L nucleolar and coiled-body phosphoprotein 1 (NOLC1) mRNA, partial cds Length = 2103 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 93 tggctgctgccttctcctcc 112 |||||||||||||||||||| Sbjct: 715 tggctgctgccttctcctcc 696
>emb|Z14980.1|NTRCAJQ4 N.tabacum Rca gene for ribulose bisphosphate carboxylase activase (pJQ4) Length = 1655 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 451 ttctacatcgctcctgctttcatg 474 ||||||||||||||| |||||||| Sbjct: 426 ttctacatcgctccttctttcatg 449
>emb|Y10657.1|CLRCAGENE C.littorale rca gene Length = 2513 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 448 ggcttctacatcgctcctgctttc 471 |||||||||||| ||||||||||| Sbjct: 1128 ggcttctacatctctcctgctttc 1151
>emb|CR974583.24| Mouse DNA sequence from clone RP23-118G7 on chromosome 12, complete sequence Length = 219072 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 448 ggcttctacatcgctcctgctttc 471 ||||||| |||||||||||||||| Sbjct: 141825 ggcttctgcatcgctcctgctttc 141848
>gb|AC018660.1|AC018660 Genomic Sequence For Arabidopsis thaliana Clone F11P10, Chromosome V, complete sequence Length = 105589 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 208 caaggccaacaggttcacagtcat 231 ||||||||||||||||| |||||| Sbjct: 27506 caaggccaacaggttcagagtcat 27483
>gb|AC134613.5| Mus musculus BAC clone RP23-133J23 from 8, complete sequence Length = 187148 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 155 aagaagctcaagaagcaggt 174 |||||||||||||||||||| Sbjct: 44669 aagaagctcaagaagcaggt 44650
>gb|AC153897.4| Mus musculus 10 BAC RP23-119E2 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 209755 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 93 tggctgctgccttctcctcc 112 |||||||||||||||||||| Sbjct: 46900 tggctgctgccttctcctcc 46919
>dbj|D21262.1|HUMORFGA Homo sapiens KIAA0035 mRNA, partial cds Length = 3727 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 93 tggctgctgccttctcctcc 112 |||||||||||||||||||| Sbjct: 708 tggctgctgccttctcctcc 689
>dbj|AP003156.1| Mus musculus genomic DNA, chromosome 16q clone:RP21-56O15, complete sequences Length = 162128 Score = 40.1 bits (20), Expect = 6.4 Identities = 35/40 (87%) Strand = Plus / Minus Query: 69 aaggtcgaccaagcagcacagagatggctgctgccttctc 108 |||||| ||||| ||||||| || ||||||||||||||| Sbjct: 108212 aaggtccaccaatgagcacagtgagggctgctgccttctc 108173
>gb|AE008692.1| Zymomonas mobilis subsp. mobilis ZM4, complete genome Length = 2056416 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 89 gagatggctgctgccttctcctcc 112 ||||||||||||||||||| |||| Sbjct: 472845 gagatggctgctgccttctgctcc 472822
>gb|M73980.1|HUMTAN1 Human TAN-1 mRNA (homologue of Drosophila Notch gene), 5' end Length = 7332 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 356 cccacgggcgacggcacccacgag 379 ||||||||||||| |||||||||| Sbjct: 703 cccacgggcgacgtcacccacgag 726
>emb|Z34289.1|HSNUCPP H.sapiens mRNA for nucleolar phosphoprotein p130 Length = 2502 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 93 tggctgctgccttctcctcc 112 |||||||||||||||||||| Sbjct: 766 tggctgctgccttctcctcc 747 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,054,074 Number of Sequences: 3902068 Number of extensions: 4054074 Number of successful extensions: 70314 Number of sequences better than 10.0: 90 Number of HSP's better than 10.0 without gapping: 90 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 69887 Number of HSP's gapped (non-prelim): 401 length of query: 474 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 452 effective length of database: 17,147,199,772 effective search space: 7750534296944 effective search space used: 7750534296944 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
