ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet101d03 |
|---|---|
| Clone Library Name | barley_pub |
>NOCT_XENLA (P79942) Nocturnin (Rhythmic message 1) (RM1)| Length = 388 Score = 32.7 bits (73), Expect = 0.41 Identities = 24/106 (22%), Positives = 45/106 (42%), Gaps = 8/106 (7%) Frame = +2 Query: 131 WEKRRDICVSVITSYSPTILCTQQGLRCQLDYLQQCLP--GYEQFGISRKGSQDTNDEY- 301 WE+R+ + + I Y P +LC Q+ + D Q L GY+ +++ S + E+ Sbjct: 129 WEERKYLILEEILMYQPDVLCLQE-VDHYFDTFQPILSRLGYQCTFLAKPWSPCLDVEHN 187 Query: 302 -----CTIFYEEEKVELTEGGTFWLSESPSVPGSISWGATAPCIAT 424 C +F+ +++ +L LS ++ T C T Sbjct: 188 NGPDGCALFFLQDRFQLVNSAKIRLSARTLKTNQVAIAETLQCCET 233
>NOCT_RAT (Q9ET55) Nocturnin (CCR4 protein homolog) (Fragment)| Length = 253 Score = 30.0 bits (66), Expect = 2.7 Identities = 24/103 (23%), Positives = 43/103 (41%), Gaps = 8/103 (7%) Frame = +2 Query: 131 WEKRRDICVSVITSYSPTILCTQQGLRCQLDYLQQCLP--GYEQFGISRKGSQDTNDEY- 301 WE+R+ + + I +Y P ILC Q+ + D LQ L GY+ + S + E+ Sbjct: 96 WEERKCLILEEILAYQPDILCLQE-VDHYFDTLQPLLSRLGYQGTFFPKPWSPCLDVEHN 154 Query: 302 -----CTIFYEEEKVELTEGGTFWLSESPSVPGSISWGATAPC 415 C +F+ + + +L L+ ++ T C Sbjct: 155 NGPDGCALFFLQSRFKLINSTNIRLTAMTLKTNQVAIAQTLEC 197
>NOCT_HUMAN (Q9UK39) Nocturnin (CCR4 protein homolog)| Length = 431 Score = 29.6 bits (65), Expect = 3.5 Identities = 23/103 (22%), Positives = 42/103 (40%), Gaps = 8/103 (7%) Frame = +2 Query: 131 WEKRRDICVSVITSYSPTILCTQQGLRCQLDYLQQCLP--GYEQFGISRKGSQDTNDEY- 301 WE+R+ + + I +Y P ILC Q+ + D Q L GY+ + S + E+ Sbjct: 172 WEERKCLILEEILAYQPDILCLQE-VDHYFDTFQPLLSRLGYQGTFFPKPWSPCLDVEHN 230 Query: 302 -----CTIFYEEEKVELTEGGTFWLSESPSVPGSISWGATAPC 415 C +F+ + + +L L+ ++ T C Sbjct: 231 NGPDGCALFFLQNRFKLVNSANIRLTAMTLKTNQVAIAQTLEC 273
>PSL2_MOUSE (Q9JJF9) Signal peptide peptidase-like 2A (EC 3.4.23.-) (SPP-like| 2A protein) (SPPL2a protein) (Intramembrane protease 3) (IMP3) (Presenilin-like protein 2) Length = 523 Score = 29.3 bits (64), Expect = 4.5 Identities = 20/51 (39%), Positives = 25/51 (49%) Frame = -3 Query: 383 LVLMEILITRRCHLL*APPSLLRRILCSIHHWCPVNLFLKCQIAHNQEGTA 231 L LM + T CHL PP +R + HW P + K +IA QEG A Sbjct: 65 LSLMNLTGTALCHLSDIPPDGIRN-KAVVVHWGPCHFLEKARIA--QEGGA 112
>SPTB1_MOUSE (P15508) Spectrin beta chain, erythrocyte (Beta-I spectrin)| Length = 2127 Score = 29.3 bits (64), Expect = 4.5 Identities = 14/70 (20%), Positives = 29/70 (41%) Frame = +2 Query: 191 CTQQGLRCQLDYLQQCLPGYEQFGISRKGSQDTNDEYCTIFYEEEKVELTEGGTFWLSES 370 C Q ++ ++ +L+QC RK + + F+E ++ E W+ E Sbjct: 594 CDPQVIQDRVSHLEQCFSELSNMAAGRKAQLEQSKRLWKFFWEMDEAE------SWIKEK 647 Query: 371 PSVPGSISWG 400 + S+ +G Sbjct: 648 EQIYSSLDYG 657
>AROF_SALTY (P0A1B5) Phospho-2-dehydro-3-deoxyheptonate aldolase, Tyr-sensitive| (EC 2.5.1.54) (Phospho-2-keto-3-deoxyheptonate aldolase) (DAHP synthetase) (3-deoxy-D-arabino-heptulosonate 7-phosphate synthase) Length = 356 Score = 29.3 bits (64), Expect = 4.5 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 4/42 (9%) Frame = +2 Query: 47 EEGMASLSITVMTLNLHEGNQPSESPNSWEKR----RDICVS 160 ++G S+ ++ N+HEGNQ SE P S K D C+S Sbjct: 291 KDGNRSIIGLMIESNIHEGNQSSEQPRSEMKYGVSVTDACIS 332
>AROF_SALTI (P0A1B6) Phospho-2-dehydro-3-deoxyheptonate aldolase, Tyr-sensitive| (EC 2.5.1.54) (Phospho-2-keto-3-deoxyheptonate aldolase) (DAHP synthetase) (3-deoxy-D-arabino-heptulosonate 7-phosphate synthase) Length = 356 Score = 29.3 bits (64), Expect = 4.5 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 4/42 (9%) Frame = +2 Query: 47 EEGMASLSITVMTLNLHEGNQPSESPNSWEKR----RDICVS 160 ++G S+ ++ N+HEGNQ SE P S K D C+S Sbjct: 291 KDGNRSIIGLMIESNIHEGNQSSEQPRSEMKYGVSVTDACIS 332
>AROF_ECOLI (P00888) Phospho-2-dehydro-3-deoxyheptonate aldolase, Tyr-sensitive| (EC 2.5.1.54) (Phospho-2-keto-3-deoxyheptonate aldolase) (DAHP synthetase) (3-deoxy-D-arabino-heptulosonate 7-phosphate synthase) Length = 356 Score = 29.3 bits (64), Expect = 4.5 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 4/42 (9%) Frame = +2 Query: 47 EEGMASLSITVMTLNLHEGNQPSESPNSWEKR----RDICVS 160 ++G S+ ++ N+HEGNQ SE P S K D C+S Sbjct: 291 KDGNRSIIGLMIESNIHEGNQSSEQPRSEMKYGVSVTDACIS 332
>CATA_CANFA (O97492) Catalase (EC 1.11.1.6)| Length = 526 Score = 28.5 bits (62), Expect = 7.7 Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 1/59 (1%) Frame = +2 Query: 170 SYSPTILCTQQGLRCQLDYLQQCLPGYEQFGISRKGS-QDTNDEYCTIFYEEEKVELTE 343 +Y P + RC L++ QC P ++F + + + Y + EEE+ L E Sbjct: 402 NYYPNSFSAPEQQRCVLEHSSQCSPDVQRFNSANEDNVTQVRTFYLKVLGEEERKRLCE 460
>NOCT_MOUSE (O35710) Nocturnin (CCR4 protein homolog)| Length = 429 Score = 28.5 bits (62), Expect = 7.7 Identities = 23/103 (22%), Positives = 42/103 (40%), Gaps = 8/103 (7%) Frame = +2 Query: 131 WEKRRDICVSVITSYSPTILCTQQGLRCQLDYLQQCLP--GYEQFGISRKGSQDTNDEY- 301 WE+R+ + + I +Y P ILC Q+ + D Q L GY+ + S + E+ Sbjct: 170 WEERKCLILEEILAYQPDILCLQE-VDHYFDTFQPLLSRLGYQGTFFPKPWSPCLDVEHN 228 Query: 302 -----CTIFYEEEKVELTEGGTFWLSESPSVPGSISWGATAPC 415 C +F+ + + +L L+ ++ T C Sbjct: 229 NGPDGCALFFLQNRFKLISSTNIRLTAMTLKTNQVAIAQTLEC 271 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 64,244,278 Number of Sequences: 219361 Number of extensions: 1254083 Number of successful extensions: 3633 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 3506 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3633 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2618960580 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
