Clone Information

BLAST Search Result

Clone Name	baet101d03
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	dbj\|AK070566.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	474	e-130
2	gb\|AC130609.2\| Oryza sativa (japonica cultivar-group) chromosome...	196	4e-47
3	dbj\|AP008211.1\| Oryza sativa (japonica cultivar-group) genomic D...	196	4e-47
4	gb\|AY108405.1\| Zea mays PCO064283 mRNA sequence	127	3e-26
5	ref\|XM_322466.1\| Neurospora crassa OR74A hypothetical protein (N...	42	1.5
6	ref\|XM_952174.1\| Neurospora crassa OR74A hypothetical protein (N...	42	1.5
7	emb\|AL365258.24\| Human DNA sequence from clone RP11-448G4 on chr...	42	1.5
8	gb\|AC079611.6\| Homo sapiens BAC clone RP11-260J21 from 2, comple...	42	1.5
9	gb\|AC151577.2\| Mus musculus BAC clone RP23-371D23 from chromosom...	40	6.0
10	ref\|XM_527320.1\| PREDICTED: Pan troglodytes similar to Olfactory...	40	6.0
11	ref\|NM_172718.1\| Mus musculus RUN and TBC1 domain containing 2 (...	40	6.0
12	gb\|AC139847.3\| Mus musculus BAC clone RP23-387P21 from chromosom...	40	6.0
13	ref\|NM_013941.2\| Homo sapiens olfactory receptor, family 10, sub...	40	6.0
14	gb\|AC130548.3\| Mus musculus BAC clone RP24-456F12 from chromosom...	40	6.0
15	gb\|AC124483.4\| Mus musculus BAC clone RP24-127J3 from chromosome...	40	6.0
16	gb\|AC136712.9\| Mus musculus chromosome 3, clone RP23-36H15, comp...	40	6.0
17	emb\|BX004810.8\| Human DNA sequence from clone DAQB-304F3 on chro...	40	6.0
18	emb\|BX248400.3\| Human DNA sequence from clone DASS-235A23 on chr...	40	6.0
19	emb\|AL645927.3\| Human DNA sequence from clone XXbac-13B8 on chro...	40	6.0
20	emb\|AL662869.2\| Human DNA sequence from clone XXbac-128A13 on ch...	40	6.0
21	emb\|AL954244.1\| Pan troglodytes chromosome 22 clone PTB-060F03 m...	40	6.0
22	emb\|AL954243.1\| Pan troglodytes chromosome 22 clone PTB-111H18 m...	40	6.0
23	gb\|AC090409.11\| Homo sapiens chromosome 18, clone RP11-879F14, c...	40	6.0
24	emb\|CR388393.8\| Human DNA sequence from clone DADB-136A24 on chr...	40	6.0
25	emb\|CR848056.4\| Human DNA sequence from clone DAAP-34I1 on chrom...	40	6.0
26	emb\|CR759768.2\| Human DNA sequence from clone DAMC-143I21 on chr...	40	6.0
27	gb\|AC023844.6\| Homo sapiens chromosome 15, clone RP11-427O16, co...	40	6.0
28	dbj\|AK167632.1\| Mus musculus 14 days pregnant adult female place...	40	6.0
29	gb\|AC011966.7\|AC011966 Homo sapiens chromosome 15, clone RP11-28...	40	6.0
30	tpg\|BK004207.1\| TPA: TPA_exp: Homo sapiens olfactory receptor OR...	40	6.0
31	dbj\|AK053555.1\| Mus musculus 0 day neonate eyeball cDNA, RIKEN f...	40	6.0
32	gb\|AC021677.4\|AC021677 Homo sapiens chromosome 15, clone RP11-62...	40	6.0
33	emb\|BX927133.5\| Human DNA sequence from clone DAMA-61E19 on chro...	40	6.0
34	gb\|AC150475.2\| Dasypus novemcinctus clone VMRC5-254H15, complete...	40	6.0
35	gb\|AC151716.5\| Mus musculus BAC clone RP23-316A23 from 5, comple...	40	6.0
36	dbj\|AP001752.1\| Homo sapiens genomic DNA, chromosome 21q, sectio...	40	6.0
37	gb\|AC006203.1\|AC006203 Homo sapiens chromosome 18, clone hRPK.45...	40	6.0
38	gb\|AC004174.1\|AC004174 Homo sapiens clone UWGC:y34b273 from 6p21...	40	6.0
39	emb\|AL035542.8\|HS994E9 Human DNA sequence from clone RP5-994E9 o...	40	6.0
40	gb\|AC168210.13\| Mus musculus chromosome 5, clone RP24-72J20, com...	40	6.0
41	gb\|AC115895.9\| Mus musculus chromosome 5, clone RP24-443E20, com...	40	6.0
42	dbj\|AP001053.1\| Homo sapiens genomic DNA, chromosome 21, clone:K...	40	6.0

>dbj|AK070566.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023056I09, full
           insert sequence
          Length = 1353

 Score =  474 bits (239), Expect = e-130
 Identities = 347/383 (90%)
 Strand = Plus / Plus

                                                                       
Query: 50  gaggggatggccagcctgtccatcacggtgatgactctgaacctgcatgaggggaatcag 109
           ||||||||| | |||||||| || ||||||||||| || ||||| || |||||| | || 
Sbjct: 250 gaggggatgactagcctgtcaattacggtgatgacgctcaacctacacgagggggagcaa 309

                                                                       
Query: 110 ccgagcgagagccctaacagctgggagaagcgccgcgacatctgcgtcagcgtcatcacc 169
           |||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 310 ccgagcgagagccccaacagctgggagaggcgccgcgacatctgcgtcagcgtcatcacc 369

                                                                       
Query: 170 agttactcccccaccatcctctgcacccagcaaggattgaggtgccagctggactaccta 229
           || ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 370 agctactcccccaccatcctctgcacccagcaaggattgaggtggcagctggactaccta 429

                                                                       
Query: 230 cagcagtgccttcctggttatgagcaatttggcatttcaagaaaaggttcacaggacacc 289
           ||||||||||| |||||||||||||||||||| |||||||||||||| ||| |||| | |
Sbjct: 430 cagcagtgcctgcctggttatgagcaatttgggatttcaagaaaaggctcagaggataac 489

                                                                       
Query: 290 aatgatgaatactgcacaatattctacgaagaagagaaggtggagcttacagaaggtggc 349
           | ||||||||| || ||||||||||| ||| |||| ||||||||||||||||||||||| 
Sbjct: 490 actgatgaatattgtacaatattctatgaaaaagaaaaggtggagcttacagaaggtggt 549

                                                                       
Query: 350 accttctggttatcagaatctccatcagtaccaggaagcatttcatggggagcaactgca 409
           ||||| ||||| ||||||||||| ||||| || |||||| |||||||||| |||||||||
Sbjct: 550 accttttggttgtcagaatctccttcagtgcctggaagcgtttcatggggggcaactgca 609

                                  
Query: 410 ccatgcattgctacatgggcaac 432
           || ||||||||||||||||||||
Sbjct: 610 ccctgcattgctacatgggcaac 632

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>gb|AC130609.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0048F12,
             complete sequence
          Length = 139627

 Score =  196 bits (99), Expect = 4e-47
 Identities = 141/155 (90%)
 Strand = Plus / Plus

                                                                         
Query: 50    gaggggatggccagcctgtccatcacggtgatgactctgaacctgcatgaggggaatcag 109
             ||||||||| | |||||||| || ||||||||||| || ||||| || |||||| | || 
Sbjct: 15800 gaggggatgactagcctgtcaattacggtgatgacgctcaacctacacgagggggagcaa 15859

                                                                         
Query: 110   ccgagcgagagccctaacagctgggagaagcgccgcgacatctgcgtcagcgtcatcacc 169
             |||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 15860 ccgagcgagagccccaacagctgggagaggcgccgcgacatctgcgtcagcgtcatcacc 15919

                                                
Query: 170   agttactcccccaccatcctctgcacccagcaagg 204
             || ||||||||||||||||||||||||||||||||
Sbjct: 15920 agctactcccccaccatcctctgcacccagcaagg 15954



 Score =  141 bits (71), Expect = 2e-30
 Identities = 98/107 (91%)
 Strand = Plus / Plus

                                                                         
Query: 325   gaaggtggagcttacagaaggtggcaccttctggttatcagaatctccatcagtaccagg 384
             |||||||||||||||||||||||| ||||| ||||| ||||||||||| ||||| || ||
Sbjct: 21537 gaaggtggagcttacagaaggtggtaccttttggttgtcagaatctccttcagtgcctgg 21596

                                                            
Query: 385   aagcatttcatggggagcaactgcaccatgcattgctacatgggcaa 431
             |||| |||||||||| ||||||||||| |||||||||||||||||||
Sbjct: 21597 aagcgtttcatggggggcaactgcaccctgcattgctacatgggcaa 21643



 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 76/87 (87%)
 Strand = Plus / Plus

                                                                         
Query: 245   ggttatgagcaatttggcatttcaagaaaaggttcacaggacaccaatgatgaatactgc 304
             ||||||||||||||||| |||||||||||||| ||| |||| | || ||||||||| || 
Sbjct: 21363 ggttatgagcaatttgggatttcaagaaaaggctcagaggataacactgatgaatattgt 21422

                                        
Query: 305   acaatattctacgaagaagagaaggtg 331
             ||||||||||| ||| |||| ||||||
Sbjct: 21423 acaatattctatgaaaaagaaaaggtg 21449



 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 48/51 (94%)
 Strand = Plus / Plus

                                                                
Query: 202   aggattgaggtgccagctggactacctacagcagtgccttcctggttatga 252
             |||||||||||| |||||||||||||||||||||||||| |||||| ||||
Sbjct: 16385 aggattgaggtggcagctggactacctacagcagtgcctgcctggtaatga 16435

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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score =  196 bits (99), Expect = 4e-47
 Identities = 141/155 (90%)
 Strand = Plus / Plus

                                                                            
Query: 50       gaggggatggccagcctgtccatcacggtgatgactctgaacctgcatgaggggaatcag 109
                ||||||||| | |||||||| || ||||||||||| || ||||| || |||||| | || 
Sbjct: 11571365 gaggggatgactagcctgtcaattacggtgatgacgctcaacctacacgagggggagcaa 11571424

                                                                            
Query: 110      ccgagcgagagccctaacagctgggagaagcgccgcgacatctgcgtcagcgtcatcacc 169
                |||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 11571425 ccgagcgagagccccaacagctgggagaggcgccgcgacatctgcgtcagcgtcatcacc 11571484

                                                   
Query: 170      agttactcccccaccatcctctgcacccagcaagg 204
                || ||||||||||||||||||||||||||||||||
Sbjct: 11571485 agctactcccccaccatcctctgcacccagcaagg 11571519



 Score =  141 bits (71), Expect = 2e-30
 Identities = 98/107 (91%)
 Strand = Plus / Plus

                                                                            
Query: 325      gaaggtggagcttacagaaggtggcaccttctggttatcagaatctccatcagtaccagg 384
                |||||||||||||||||||||||| ||||| ||||| ||||||||||| ||||| || ||
Sbjct: 11577102 gaaggtggagcttacagaaggtggtaccttttggttgtcagaatctccttcagtgcctgg 11577161

                                                               
Query: 385      aagcatttcatggggagcaactgcaccatgcattgctacatgggcaa 431
                |||| |||||||||| ||||||||||| |||||||||||||||||||
Sbjct: 11577162 aagcgtttcatggggggcaactgcaccctgcattgctacatgggcaa 11577208



 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 76/87 (87%)
 Strand = Plus / Plus

                                                                            
Query: 245      ggttatgagcaatttggcatttcaagaaaaggttcacaggacaccaatgatgaatactgc 304
                ||||||||||||||||| |||||||||||||| ||| |||| | || ||||||||| || 
Sbjct: 11576928 ggttatgagcaatttgggatttcaagaaaaggctcagaggataacactgatgaatattgt 11576987

                                           
Query: 305      acaatattctacgaagaagagaaggtg 331
                ||||||||||| ||| |||| ||||||
Sbjct: 11576988 acaatattctatgaaaaagaaaaggtg 11577014



 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 48/51 (94%)
 Strand = Plus / Plus

                                                                   
Query: 202      aggattgaggtgccagctggactacctacagcagtgccttcctggttatga 252
                |||||||||||| |||||||||||||||||||||||||| |||||| ||||
Sbjct: 11571950 aggattgaggtggcagctggactacctacagcagtgcctgcctggtaatga 11572000

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>gb|AY108405.1| Zea mays PCO064283 mRNA sequence
          Length = 862

 Score =  127 bits (64), Expect = 3e-26
 Identities = 100/112 (89%)
 Strand = Plus / Plus

                                                                       
Query: 334 gcttacagaaggtggcaccttctggttatcagaatctccatcagtaccaggaagcatttc 393
           |||||| ||||||||||| || ||||| || ||||| ||||| || ||||||||||||||
Sbjct: 8   gcttactgaaggtggcactttttggttgtcggaatcaccatcggttccaggaagcatttc 67

                                                               
Query: 394 atggggagcaactgcaccatgcattgctacatgggcaacgtttcaactcaaa 445
           |||||||||||  ||||| |||||||| ||||||||||||||||||||||||
Sbjct: 68  atggggagcaaaggcaccctgcattgcaacatgggcaacgtttcaactcaaa 119

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>ref|XM_322466.1| Neurospora crassa OR74A hypothetical protein (NCU00381.1) partial
            mRNA
          Length = 3465

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 174  actcccccaccatcctctgca 194
            |||||||||||||||||||||
Sbjct: 2417 actcccccaccatcctctgca 2437

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>ref|XM_952174.1| Neurospora crassa OR74A hypothetical protein (NCU00381.1) partial
            mRNA
          Length = 3465

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 174  actcccccaccatcctctgca 194
            |||||||||||||||||||||
Sbjct: 2417 actcccccaccatcctctgca 2437

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>emb|AL365258.24| Human DNA sequence from clone RP11-448G4 on chromosome 1 Contains the
             5' end of a novel gene, a eukaryotic translation
             elongation factor 1 alpha (EEF1A) pseudogene, a novel
             pseudogene, a novel gene and a ribosomal protein L24
             (RPL24) pseudogene, complete sequence
          Length = 129343

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 256   atttggcatttcaagaaaaggttca 280
             |||||| ||||||||||||||||||
Sbjct: 70350 atttggtatttcaagaaaaggttca 70374

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>gb|AC079611.6| Homo sapiens BAC clone RP11-260J21 from 2, complete sequence
          Length = 180783

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 178   ccccaccatcctctgcaccca 198
             |||||||||||||||||||||
Sbjct: 69339 ccccaccatcctctgcaccca 69319

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>gb|AC151577.2| Mus musculus BAC clone RP23-371D23 from chromosome 5, complete sequence
          Length = 206735

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 186   tcctctgcacccagcaagga 205
             ||||||||||||||||||||
Sbjct: 45019 tcctctgcacccagcaagga 45038

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>ref|XM_527320.1| PREDICTED: Pan troglodytes similar to Olfactory receptor 10C1
          (Hs6M1-17) (LOC471942), mRNA
          Length = 939

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                  
Query: 29 gatagtgagaaagccagagaagag 52
          ||||||||||||| ||||||||||
Sbjct: 99 gatagtgagaaagacagagaagag 76

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>ref|NM_172718.1| Mus musculus RUN and TBC1 domain containing 2 (Rutbc2), mRNA
          Length = 5086

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 186  tcctctgcacccagcaagga 205
            ||||||||||||||||||||
Sbjct: 3616 tcctctgcacccagcaagga 3635

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>gb|AC139847.3| Mus musculus BAC clone RP23-387P21 from chromosome 3, complete
            sequence
          Length = 203824

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 374  tcagtaccaggaagcatttc 393
            ||||||||||||||||||||
Sbjct: 4206 tcagtaccaggaagcatttc 4225

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>ref|NM_013941.2| Homo sapiens olfactory receptor, family 10, subfamily C, member 1
          (OR10C1), mRNA
          Length = 939

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                  
Query: 29 gatagtgagaaagccagagaagag 52
          ||||||||||||| ||||||||||
Sbjct: 99 gatagtgagaaagacagagaagag 76

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>gb|AC130548.3| Mus musculus BAC clone RP24-456F12 from chromosome 5, complete sequence
          Length = 170929

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 186    tcctctgcacccagcaagga 205
              ||||||||||||||||||||
Sbjct: 118234 tcctctgcacccagcaagga 118253

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>gb|AC124483.4| Mus musculus BAC clone RP24-127J3 from chromosome 5, complete sequence
          Length = 134272

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 227    ctacagcagtgccttcctgg 246
              ||||||||||||||||||||
Sbjct: 119940 ctacagcagtgccttcctgg 119921

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>gb|AC136712.9| Mus musculus chromosome 3, clone RP23-36H15, complete sequence
          Length = 201139

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 374    tcagtaccaggaagcatttc 393
              ||||||||||||||||||||
Sbjct: 197372 tcagtaccaggaagcatttc 197391

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>emb|BX004810.8| Human DNA sequence from clone DAQB-304F3 on chromosome 6 Contains the
             OR12D1P pseudogene for olfactory receptor, family 12,
             subfamily D, member 1, the OR11A1 gene for olfactory
             receptor, family 11, subfamily A, member 1, the OR10C1
             gene for olfactory receptor, family 10, subfamily C,
             member 1 and no CpG islands, complete sequence
          Length = 32573

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 29    gatagtgagaaagccagagaagag 52
             ||||||||||||| ||||||||||
Sbjct: 25476 gatagtgagaaagacagagaagag 25453

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>emb|BX248400.3| Human DNA sequence from clone DASS-235A23 on chromosome 6, complete
             sequence
          Length = 35283

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 29    gatagtgagaaagccagagaagag 52
             ||||||||||||| ||||||||||
Sbjct: 31967 gatagtgagaaagacagagaagag 31944

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>emb|AL645927.3| Human DNA sequence from clone XXbac-13B8 on chromosome 6 contains the
             OR12D2, OR11A1, OR10C1 and OR2H1 genes for olfactory
             receptor, family 12, subfamily D, member 2, family 11,
             subfamily A, member 1, family 10, subfamily C, member 1
             and family 2, subfamily H, member 1, the OR12D1P
             pseudogene for olfactory receptor, family12, subfamily D,
             member 1, a diubiquitin pseudogene, the MRG gene for
             MAS-related G protein-coupled receptor MRG and a ribosomal
             protein S17 (RPS17) pseudogene, complete sequence
          Length = 112578

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 29    gatagtgagaaagccagagaagag 52
             ||||||||||||| ||||||||||
Sbjct: 49369 gatagtgagaaagacagagaagag 49346

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>emb|AL662869.2| Human DNA sequence from clone XXbac-128A13 on chromosome 6 contains the
             OR12D2, OR11A1, OR10C1 and OR2H1 genes for olfactory
             receptor, family 12, subfamily D, member 2, family 11,
             subfamily A, member 1, family 10, subfamily C, member 1,
             family 2, subfamily H, member 1, the gene for MAS-related
             G protein-coupled receptor (MRG), the OR12D1P pseudogene
             for olfactory receptor, family 12, subfamily D, member 1,
             a diubiquitin pseudogene and a ribosomal protein S17
             (RPS17) pseudogene, complete sequence
          Length = 133836

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 29    gatagtgagaaagccagagaagag 52
             ||||||||||||| ||||||||||
Sbjct: 46033 gatagtgagaaagacagagaagag 46010

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>emb|AL954244.1| Pan troglodytes chromosome 22 clone PTB-060F03 map 22q22.3, complete
             sequence
          Length = 151449

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 175   ctcccccaccatcctctgca 194
             ||||||||||||||||||||
Sbjct: 84859 ctcccccaccatcctctgca 84840

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>emb|AL954243.1| Pan troglodytes chromosome 22 clone PTB-111H18 map 22q22.3, complete
              sequence
          Length = 216379

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 175    ctcccccaccatcctctgca 194
              ||||||||||||||||||||
Sbjct: 103944 ctcccccaccatcctctgca 103925

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>gb|AC090409.11| Homo sapiens chromosome 18, clone RP11-879F14, complete sequence
          Length = 164204

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 411    catgcattgctacatgggca 430
              ||||||||||||||||||||
Sbjct: 120013 catgcattgctacatgggca 120032

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>emb|CR388393.8| Human DNA sequence from clone DADB-136A24 on chromosome 6, complete
             sequence
          Length = 159366

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 29    gatagtgagaaagccagagaagag 52
             ||||||||||||| ||||||||||
Sbjct: 70841 gatagtgagaaagacagagaagag 70818

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>emb|CR848056.4| Human DNA sequence from clone DAAP-34I1 on chromosome 6, complete
             sequence
          Length = 28527

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 29    gatagtgagaaagccagagaagag 52
             ||||||||||||| ||||||||||
Sbjct: 18419 gatagtgagaaagacagagaagag 18396

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>emb|CR759768.2| Human DNA sequence from clone DAMC-143I21 on chromosome 6, complete
             sequence
          Length = 123752

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 29    gatagtgagaaagccagagaagag 52
             ||||||||||||| ||||||||||
Sbjct: 25480 gatagtgagaaagacagagaagag 25457

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>gb|AC023844.6| Homo sapiens chromosome 15, clone RP11-427O16, complete sequence
          Length = 188788

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 54    ggatggccagcctgtccatc 73
             ||||||||||||||||||||
Sbjct: 13169 ggatggccagcctgtccatc 13150

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>dbj|AK167632.1| Mus musculus 14 days pregnant adult female placenta cDNA, RIKEN
            full-length enriched library, clone:I530025L03
            product:Hypothetical Ypt/Rab-GAP domain of gyp1p
            structure containing protein homolog [Mus musculus], full
            insert sequence
          Length = 4303

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 186  tcctctgcacccagcaagga 205
            ||||||||||||||||||||
Sbjct: 2833 tcctctgcacccagcaagga 2852

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>gb|AC011966.7|AC011966 Homo sapiens chromosome 15, clone RP11-285I14, complete sequence
          Length = 167862

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 54     ggatggccagcctgtccatc 73
              ||||||||||||||||||||
Sbjct: 166764 ggatggccagcctgtccatc 166745

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>tpg|BK004207.1| TPA: TPA_exp: Homo sapiens olfactory receptor OR6-31 gene,
          complete cds
          Length = 939

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                  
Query: 29 gatagtgagaaagccagagaagag 52
          ||||||||||||| ||||||||||
Sbjct: 99 gatagtgagaaagacagagaagag 76

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>dbj|AK053555.1| Mus musculus 0 day neonate eyeball cDNA, RIKEN full-length enriched
            library, clone:E130107M15 product:hypothetical
            Ypt/Rab-GAP domain of gyp1p structure containing protein,
            full insert sequence
          Length = 5086

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 186  tcctctgcacccagcaagga 205
            ||||||||||||||||||||
Sbjct: 3616 tcctctgcacccagcaagga 3635

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>gb|AC021677.4|AC021677 Homo sapiens chromosome 15, clone RP11-62D2, complete sequence
          Length = 177762

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 54  ggatggccagcctgtccatc 73
           ||||||||||||||||||||
Sbjct: 903 ggatggccagcctgtccatc 884

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>emb|BX927133.5| Human DNA sequence from clone DAMA-61E19 on chromosome 6, complete
             sequence
          Length = 107459

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 29    gatagtgagaaagccagagaagag 52
             ||||||||||||| ||||||||||
Sbjct: 39538 gatagtgagaaagacagagaagag 39515

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>gb|AC150475.2| Dasypus novemcinctus clone VMRC5-254H15, complete sequence
          Length = 114142

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 263   atttcaagaaaaggttcaca 282
             ||||||||||||||||||||
Sbjct: 65089 atttcaagaaaaggttcaca 65070

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>gb|AC151716.5| Mus musculus BAC clone RP23-316A23 from 5, complete sequence
          Length = 193466

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 186   tcctctgcacccagcaagga 205
             ||||||||||||||||||||
Sbjct: 33935 tcctctgcacccagcaagga 33916

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>dbj|AP001752.1| Homo sapiens genomic DNA, chromosome 21q, section 96/105
          Length = 340000

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 175    ctcccccaccatcctctgca 194
              ||||||||||||||||||||
Sbjct: 263200 ctcccccaccatcctctgca 263181

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>gb|AC006203.1|AC006203 Homo sapiens chromosome 18, clone hRPK.453_M_1, complete sequence
          Length = 185741

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 411    catgcattgctacatgggca 430
              ||||||||||||||||||||
Sbjct: 176299 catgcattgctacatgggca 176280

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>gb|AC004174.1|AC004174 Homo sapiens clone UWGC:y34b273 from 6p21, complete sequence
          Length = 37760

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 29   gatagtgagaaagccagagaagag 52
            ||||||||||||| ||||||||||
Sbjct: 8562 gatagtgagaaagacagagaagag 8585

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>emb|AL035542.8|HS994E9 Human DNA sequence from clone RP5-994E9 on chromosome 6p21.31-22.2
             Contains the OR12D2, OR11A1, OR10C1 and OR2H1 genes for
             olfactory receptors 12D2, 11A1, 10C1 and 2H1, olfactory
             receptor 12D1 pseudogene OR12D1P, a diubiquitin
             pseudogene, the MAS-related G protein-coupled receptor MRG
             gene, an RPS17 (40S ribosomal protein S17) pseudogene and
             GSSs, complete sequence
          Length = 114868

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 29    gatagtgagaaagccagagaagag 52
             ||||||||||||| ||||||||||
Sbjct: 51249 gatagtgagaaagacagagaagag 51226

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>gb|AC168210.13| Mus musculus chromosome 5, clone RP24-72J20, complete sequence
          Length = 193750

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 227   ctacagcagtgccttcctgg 246
             ||||||||||||||||||||
Sbjct: 11812 ctacagcagtgccttcctgg 11831

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>gb|AC115895.9| Mus musculus chromosome 5, clone RP24-443E20, complete sequence
          Length = 174073

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 227    ctacagcagtgccttcctgg 246
              ||||||||||||||||||||
Sbjct: 158674 ctacagcagtgccttcctgg 158693

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>dbj|AP001053.1| Homo sapiens genomic DNA, chromosome 21, clone:KB836E9, MX1-D21S171
              region, complete sequence
          Length = 161920

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 175    ctcccccaccatcctctgca 194
              ||||||||||||||||||||
Sbjct: 111427 ctcccccaccatcctctgca 111408


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,878,873
Number of Sequences: 3902068
Number of extensions: 3878873
Number of successful extensions: 72231
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 72129
Number of HSP's gapped (non-prelim): 102
length of query: 445
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 423
effective length of database: 17,147,199,772
effective search space: 7253265503556
effective search space used: 7253265503556
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result