ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet101a09 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK071633.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023102J23, full insert sequence Length = 1076 Score = 174 bits (88), Expect = 1e-40 Identities = 145/164 (88%) Strand = Plus / Plus Query: 188 gcgctctactacgagtcgctctgcccctactgctcgcgcttcatcgtcacccgcctcgcc 247 ||||||||||||||| |||| ||||| ||||||||||| |||||||||| || ||||||| Sbjct: 226 gcgctctactacgagacgctgtgcccgtactgctcgcggttcatcgtcaaccacctcgcc 285 Query: 248 gggatcttcgacagcgggctcatccacgccgtcgacctcctgctcgtcccctacggcaac 307 ||||||||||| |||| || || ||||||||||||||| |||||||| ||||||||| Sbjct: 286 gggatcttcgaggacgggatcgtcgacgccgtcgacctccgcctcgtcccatacggcaac 345 Query: 308 gcccacgtccgcggcgccaacaacaccatcacctgccagcatgg 351 ||||||||| ||||||||||||||||||| | ||||||||||| Sbjct: 346 gcccacgtcgtcggcgccaacaacaccatctcttgccagcatgg 389
>dbj|AK068091.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013131A15, full insert sequence Length = 1161 Score = 167 bits (84), Expect = 3e-38 Identities = 144/164 (87%) Strand = Plus / Plus Query: 188 gcgctctactacgagtcgctctgcccctactgctcgcgcttcatcgtcacccgcctcgcc 247 ||||||||||||||| |||| ||||| ||||||||||| |||||||||| || ||||||| Sbjct: 231 gcgctctactacgagacgctgtgcccgtactgctcgcggttcatcgtcaaccacctcgcc 290 Query: 248 gggatcttcgacagcgggctcatccacgccgtcgacctcctgctcgtcccctacggcaac 307 ||||||||||| |||| || || ||||||||||||||| |||||||| ||||||||| Sbjct: 291 gggatcttcgaggacgggatcgtcgacgccgtcgacctccgcctcgtcccatacggcaac 350 Query: 308 gcccacgtccgcggcgccaacaacaccatcacctgccagcatgg 351 ||||||||| ||| ||||||||||||||| | ||||||||||| Sbjct: 351 gcccacgtcgtcggtgccaacaacaccatctcttgccagcatgg 394
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 165 bits (83), Expect = 1e-37 Identities = 140/159 (88%) Strand = Plus / Minus Query: 188 gcgctctactacgagtcgctctgcccctactgctcgcgcttcatcgtcacccgcctcgcc 247 ||||||||||||||| |||| ||||| ||||||||||| |||||||||| || ||||||| Sbjct: 10331057 gcgctctactacgagacgctgtgcccgtactgctcgcggttcatcgtcaaccacctcgcc 10330998 Query: 248 gggatcttcgacagcgggctcatccacgccgtcgacctcctgctcgtcccctacggcaac 307 ||||||||||| |||| || || ||||||||||||||| |||||||| ||||||||| Sbjct: 10330997 gggatcttcgaggacgggatcgtcgacgccgtcgacctccgcctcgtcccatacggcaac 10330938 Query: 308 gcccacgtccgcggcgccaacaacaccatcacctgccag 346 ||||||||| ||||||||||||||||||| | |||||| Sbjct: 10330937 gcccacgtcgtcggcgccaacaacaccatctcttgccag 10330899 Score = 58.0 bits (29), Expect = 2e-05 Identities = 32/33 (96%) Strand = Plus / Minus Query: 186 tggcgctctactacgagtcgctctgcccctact 218 |||||||||||||||||||||| |||||||||| Sbjct: 10329158 tggcgctctactacgagtcgctgtgcccctact 10329126 Score = 54.0 bits (27), Expect = 3e-04 Identities = 36/39 (92%) Strand = Plus / Minus Query: 273 acgccgtcgacctcctgctcgtcccctacggcaacgccc 311 |||||||||||||| |||||||||||||||||||||| Sbjct: 10329071 acgccgtcgacctctccctcgtcccctacggcaacgccc 10329033 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 92 cgcgccctccgcctccgcctc 112 ||||||||||||||||||||| Sbjct: 3085746 cgcgccctccgcctccgcctc 3085766
>gb|AC118670.2| Genomic sequence for Oryza sativa, Nipponbare stain, clone OSJNBb0036D03, from chromosome 3, complete sequence Length = 125800 Score = 165 bits (83), Expect = 1e-37 Identities = 140/159 (88%) Strand = Plus / Minus Query: 188 gcgctctactacgagtcgctctgcccctactgctcgcgcttcatcgtcacccgcctcgcc 247 ||||||||||||||| |||| ||||| ||||||||||| |||||||||| || ||||||| Sbjct: 44523 gcgctctactacgagacgctgtgcccgtactgctcgcggttcatcgtcaaccacctcgcc 44464 Query: 248 gggatcttcgacagcgggctcatccacgccgtcgacctcctgctcgtcccctacggcaac 307 ||||||||||| |||| || || ||||||||||||||| |||||||| ||||||||| Sbjct: 44463 gggatcttcgaggacgggatcgtcgacgccgtcgacctccgcctcgtcccatacggcaac 44404 Query: 308 gcccacgtccgcggcgccaacaacaccatcacctgccag 346 ||||||||| ||||||||||||||||||| | |||||| Sbjct: 44403 gcccacgtcgtcggcgccaacaacaccatctcttgccag 44365 Score = 58.0 bits (29), Expect = 2e-05 Identities = 32/33 (96%) Strand = Plus / Minus Query: 186 tggcgctctactacgagtcgctctgcccctact 218 |||||||||||||||||||||| |||||||||| Sbjct: 42624 tggcgctctactacgagtcgctgtgcccctact 42592 Score = 54.0 bits (27), Expect = 3e-04 Identities = 36/39 (92%) Strand = Plus / Minus Query: 273 acgccgtcgacctcctgctcgtcccctacggcaacgccc 311 |||||||||||||| |||||||||||||||||||||| Sbjct: 42537 acgccgtcgacctctccctcgtcccctacggcaacgccc 42499
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 165 bits (83), Expect = 1e-37 Identities = 140/159 (88%) Strand = Plus / Minus Query: 188 gcgctctactacgagtcgctctgcccctactgctcgcgcttcatcgtcacccgcctcgcc 247 ||||||||||||||| |||| ||||| ||||||||||| |||||||||| || ||||||| Sbjct: 10329158 gcgctctactacgagacgctgtgcccgtactgctcgcggttcatcgtcaaccacctcgcc 10329099 Query: 248 gggatcttcgacagcgggctcatccacgccgtcgacctcctgctcgtcccctacggcaac 307 ||||||||||| |||| || || ||||||||||||||| |||||||| ||||||||| Sbjct: 10329098 gggatcttcgaggacgggatcgtcgacgccgtcgacctccgcctcgtcccatacggcaac 10329039 Query: 308 gcccacgtccgcggcgccaacaacaccatcacctgccag 346 ||||||||| ||||||||||||||||||| | |||||| Sbjct: 10329038 gcccacgtcgtcggcgccaacaacaccatctcttgccag 10329000 Score = 58.0 bits (29), Expect = 2e-05 Identities = 32/33 (96%) Strand = Plus / Minus Query: 186 tggcgctctactacgagtcgctctgcccctact 218 |||||||||||||||||||||| |||||||||| Sbjct: 10327259 tggcgctctactacgagtcgctgtgcccctact 10327227 Score = 54.0 bits (27), Expect = 3e-04 Identities = 36/39 (92%) Strand = Plus / Minus Query: 273 acgccgtcgacctcctgctcgtcccctacggcaacgccc 311 |||||||||||||| |||||||||||||||||||||| Sbjct: 10327172 acgccgtcgacctctccctcgtcccctacggcaacgccc 10327134 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 92 cgcgccctccgcctccgcctc 112 ||||||||||||||||||||| Sbjct: 3085857 cgcgccctccgcctccgcctc 3085877
>dbj|AK106050.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-206-F01, full insert sequence Length = 942 Score = 58.0 bits (29), Expect = 2e-05 Identities = 32/33 (96%) Strand = Plus / Plus Query: 186 tggcgctctactacgagtcgctctgcccctact 218 |||||||||||||||||||||| |||||||||| Sbjct: 149 tggcgctctactacgagtcgctgtgcccctact 181 Score = 54.0 bits (27), Expect = 3e-04 Identities = 36/39 (92%) Strand = Plus / Plus Query: 273 acgccgtcgacctcctgctcgtcccctacggcaacgccc 311 |||||||||||||| |||||||||||||||||||||| Sbjct: 236 acgccgtcgacctctccctcgtcccctacggcaacgccc 274
>dbj|AB085212.1| Triticum aestivum Tria27 mRNA for 27K protein, partial cds Length = 798 Score = 50.1 bits (25), Expect = 0.005 Identities = 34/37 (91%) Strand = Plus / Plus Query: 331 caccatcacctgccagcatggccccgatgaatgcctt 367 ||||||| |||| |||||||||||||| ||||||||| Sbjct: 183 caccatctcctgtcagcatggccccgaggaatgcctt 219 Score = 46.1 bits (23), Expect = 0.079 Identities = 26/27 (96%) Strand = Plus / Plus Query: 192 tctactacgagtcgctctgcccctact 218 |||||||||||||||| |||||||||| Sbjct: 47 tctactacgagtcgctgtgcccctact 73
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 46.1 bits (23), Expect = 0.079 Identities = 23/23 (100%) Strand = Plus / Plus Query: 97 cctccgcctccgcctcgtcctgc 119 ||||||||||||||||||||||| Sbjct: 2544015 cctccgcctccgcctcgtcctgc 2544037 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 93 gcgccctccgcctccgcctcgtcct 117 ||||| ||||||||||||||||||| Sbjct: 2226881 gcgccatccgcctccgcctcgtcct 2226905 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 89 cgtcgcgccctccgcctccgcctc 112 ||||||| |||||||||||||||| Sbjct: 5730907 cgtcgcgacctccgcctccgcctc 5730930 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 93 gcgccctccgcctccgcctcgtcc 116 ||||| |||||||||||||||||| Sbjct: 2226665 gcgccatccgcctccgcctcgtcc 2226688
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 46.1 bits (23), Expect = 0.079 Identities = 23/23 (100%) Strand = Plus / Plus Query: 97 cctccgcctccgcctcgtcctgc 119 ||||||||||||||||||||||| Sbjct: 2543959 cctccgcctccgcctcgtcctgc 2543981 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 93 gcgccctccgcctccgcctcgtcct 117 ||||| ||||||||||||||||||| Sbjct: 2226825 gcgccatccgcctccgcctcgtcct 2226849 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 89 cgtcgcgccctccgcctccgcctc 112 ||||||| |||||||||||||||| Sbjct: 5730900 cgtcgcgacctccgcctccgcctc 5730923 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 93 gcgccctccgcctccgcctcgtcc 116 ||||| |||||||||||||||||| Sbjct: 2226609 gcgccatccgcctccgcctcgtcc 2226632
>emb|AL929350.3|CNS08CCE Oryza sativa chromosome 12, . BAC OSJNBb0104J15 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 136490 Score = 46.1 bits (23), Expect = 0.079 Identities = 23/23 (100%) Strand = Plus / Minus Query: 97 cctccgcctccgcctcgtcctgc 119 ||||||||||||||||||||||| Sbjct: 123994 cctccgcctccgcctcgtcctgc 123972
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 44.1 bits (22), Expect = 0.31 Identities = 22/22 (100%) Strand = Plus / Minus Query: 89 cgtcgcgccctccgcctccgcc 110 |||||||||||||||||||||| Sbjct: 735210 cgtcgcgccctccgcctccgcc 735189
>ref|NM_100582.2| Arabidopsis thaliana catalytic AT1G07080 mRNA, complete cds Length = 1190 Score = 42.1 bits (21), Expect = 1.2 Identities = 27/29 (93%) Strand = Plus / Plus Query: 194 tactacgagtcgctctgcccctactgctc 222 ||||||||||| ||||| ||||||||||| Sbjct: 189 tactacgagtctctctgtccctactgctc 217
>ref|NM_189653.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 783 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 93 gcgccctccgcctccgcctcgtcct 117 ||||| ||||||||||||||||||| Sbjct: 399 gcgccgtccgcctccgcctcgtcct 423
>ref|XM_483438.1| Oryza sativa (japonica cultivar-group), mRNA Length = 792 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 97 cctccgcctccgcctcgtcct 117 ||||||||||||||||||||| Sbjct: 613 cctccgcctccgcctcgtcct 593
>ref|NM_006030.2| Homo sapiens calcium channel, voltage-dependent, alpha 2/delta subunit 2 (CACNA2D2), transcript variant 2, mRNA Length = 5337 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 272 cacgccgtcgacctcctgctc 292 ||||||||||||||||||||| Sbjct: 290 cacgccgtcgacctcctgctc 270
>ref|NM_001005505.1| Homo sapiens calcium channel, voltage-dependent, alpha 2/delta subunit 2 (CACNA2D2), transcript variant 1, mRNA Length = 5343 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 272 cacgccgtcgacctcctgctc 292 ||||||||||||||||||||| Sbjct: 290 cacgccgtcgacctcctgctc 270
>ref|XM_472981.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 477 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 92 cgcgccctccgcctccgcctcgtcc 116 |||| |||||||||||||||||||| Sbjct: 111 cgcggcctccgcctccgcctcgtcc 87
>gb|AC124141.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0065C11, complete sequence Length = 141578 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 93 gcgccctccgcctccgcctcgtcct 117 ||||| ||||||||||||||||||| Sbjct: 14377 gcgccatccgcctccgcctcgtcct 14401
>gb|AE014850.1| Plasmodium falciparum 3D7 chromosome 12, section 7 of 9 of the complete sequence Length = 250713 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 99 tccgcctccgcctcgtcctgctcct 123 |||||||||||||||||||| |||| Sbjct: 229582 tccgcctccgcctcgtcctggtcct 229558
>gb|CP000144.1| Rhodobacter sphaeroides 2.4.1 chromosome 2, complete genome Length = 943016 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 136 cggcgccctcctgccgccggc 156 ||||||||||||||||||||| Sbjct: 117144 cggcgccctcctgccgccggc 117124
>ref|XM_811232.1| Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.1047053507083.10) partial mRNA Length = 2001 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 97 cctccgcctccgcctcgtcct 117 ||||||||||||||||||||| Sbjct: 1885 cctccgcctccgcctcgtcct 1865
>gb|AC099401.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1134F05, complete sequence Length = 101799 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 92 cgcgccctccgcctccgcctc 112 ||||||||||||||||||||| Sbjct: 8759 cgcgccctccgcctccgcctc 8779
>gb|BC047578.1| Homo sapiens SEC14 and spectrin domains 1, mRNA (cDNA clone MGC:48388 IMAGE:4815542), complete cds Length = 3001 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 86 tcccgtcgcgccctccgcctccgcc 110 ||||| ||||||||||||||||||| Sbjct: 177 tcccgccgcgccctccgcctccgcc 201
>emb|AL731617.3|OSJN00261 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0076N16, complete sequence Length = 146313 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 92 cgcgccctccgcctccgcctcgtcc 116 |||| |||||||||||||||||||| Sbjct: 32594 cgcggcctccgcctccgcctcgtcc 32570
>gb|AC105730.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0011L14, complete sequence Length = 117974 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 92 cgcgccctccgcctccgcctc 112 ||||||||||||||||||||| Sbjct: 10515 cgcgccctccgcctccgcctc 10495
>dbj|AK096232.1| Homo sapiens cDNA FLJ38913 fis, clone NT2NE2008017 Length = 2555 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 86 tcccgtcgcgccctccgcctccgcc 110 ||||| ||||||||||||||||||| Sbjct: 6 tcccgccgcgccctccgcctccgcc 30
>gb|AY054145.1| Arabidopsis thaliana At1g07080/F10K1_15 mRNA, complete cds Length = 798 Score = 42.1 bits (21), Expect = 1.2 Identities = 27/29 (93%) Strand = Plus / Plus Query: 194 tactacgagtcgctctgcccctactgctc 222 ||||||||||| ||||| ||||||||||| Sbjct: 130 tactacgagtctctctgtccctactgctc 158
>emb|AJ251368.1|HSA251368 Homo sapiens mRNA for for calcium channel, alpha 2/delta subunit 2 (CACNA2D2 gene), splice variant alpha2delta-2b Length = 3453 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 272 cacgccgtcgacctcctgctc 292 ||||||||||||||||||||| Sbjct: 252 cacgccgtcgacctcctgctc 232
>emb|AJ251367.1|HSA251367 Homo sapiens mRNA for for calcium channel, alpha 2/delta subunit 2 (CACNA2D2 gene), splice variant alpha2delta-2a Length = 3432 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 272 cacgccgtcgacctcctgctc 292 ||||||||||||||||||||| Sbjct: 252 cacgccgtcgacctcctgctc 232
>gb|AY049308.1| Arabidopsis thaliana At1g07080/F10K1_15 mRNA, complete cds Length = 1100 Score = 42.1 bits (21), Expect = 1.2 Identities = 27/29 (93%) Strand = Plus / Plus Query: 194 tactacgagtcgctctgcccctactgctc 222 ||||||||||| ||||| ||||||||||| Sbjct: 159 tactacgagtctctctgtccctactgctc 187
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 93 gcgccctccgcctccgcctcgtcct 117 ||||| ||||||||||||||||||| Sbjct: 30311666 gcgccgtccgcctccgcctcgtcct 30311642 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 92 cgcgccctccgcctccgcctcgtcc 116 |||| |||||||||||||||||||| Sbjct: 24472963 cgcggcctccgcctccgcctcgtcc 24472939
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 97 cctccgcctccgcctcgtcct 117 ||||||||||||||||||||| Sbjct: 26224725 cctccgcctccgcctcgtcct 26224745 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 142 cctcctgccgccggccgctgccgc 165 ||||||||||||| |||||||||| Sbjct: 15188142 cctcctgccgccgaccgctgccgc 15188165 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 93 gcgccctccgcctccgcctc 112 |||||||||||||||||||| Sbjct: 10642003 gcgccctccgcctccgcctc 10641984
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 93 gcgccctccgcctccgcctcgtcct 117 ||||| ||||||||||||||||||| Sbjct: 14476372 gcgccatccgcctccgcctcgtcct 14476396
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 93 gcgccctccgcctccgcctcgtcct 117 ||||| ||||||||||||||||||| Sbjct: 4807383 gcgccgtccgcctccgcctcgtcct 4807407
>emb|BX816741.1|CNS0ABK9 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH66ZE05 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 956 Score = 42.1 bits (21), Expect = 1.2 Identities = 27/29 (93%) Strand = Plus / Plus Query: 194 tactacgagtcgctctgcccctactgctc 222 ||||||||||| ||||| ||||||||||| Sbjct: 134 tactacgagtctctctgtccctactgctc 162
>gb|AC093911.2| Homo sapiens BAC clone RP11-765B12 from 2, complete sequence Length = 186199 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 86 tcccgtcgcgccctccgcctccgcc 110 ||||| ||||||||||||||||||| Sbjct: 128494 tcccgccgcgccctccgcctccgcc 128470
>gb|AC067971.5|F10K1 Sequence of BAC F10K1 from Arabidopsis thaliana chromosome 1, complete sequence Length = 111464 Score = 42.1 bits (21), Expect = 1.2 Identities = 27/29 (93%) Strand = Plus / Minus Query: 194 tactacgagtcgctctgcccctactgctc 222 ||||||||||| ||||| ||||||||||| Sbjct: 71362 tactacgagtctctctgtccctactgctc 71334
>dbj|AP002743.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0710E05 Length = 179714 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 93 gcgccctccgcctccgcctcgtcct 117 ||||| ||||||||||||||||||| Sbjct: 52032 gcgccgtccgcctccgcctcgtcct 52056
>dbj|AP003857.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1014_E06 Length = 112241 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 97 cctccgcctccgcctcgtcct 117 ||||||||||||||||||||| Sbjct: 57650 cctccgcctccgcctcgtcct 57670
>dbj|AK111428.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-182-H05, full insert sequence Length = 1515 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 93 gcgccctccgcctccgcctcgtcct 117 ||||| ||||||||||||||||||| Sbjct: 452 gcgccatccgcctccgcctcgtcct 476 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 93 gcgccctccgcctccgcctcgtcc 116 ||||| |||||||||||||||||| Sbjct: 236 gcgccatccgcctccgcctcgtcc 259
>emb|AJ334805.1|HSA334805 Homo sapiens genomic sequence surrounding NotI site, clone NL1-EG14C Length = 607 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 86 tcccgtcgcgccctccgcctccgcc 110 ||||| ||||||||||||||||||| Sbjct: 393 tcccgccgcgccctccgcctccgcc 369
>dbj|AK070248.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023041O06, full insert sequence Length = 2761 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 92 cgcgccctccgcctccgcctc 112 ||||||||||||||||||||| Sbjct: 238 cgcgccctccgcctccgcctc 258
>dbj|AK067375.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013104L22, full insert sequence Length = 2584 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 92 cgcgccctccgcctccgcctc 112 ||||||||||||||||||||| Sbjct: 177 cgcgccctccgcctccgcctc 197
>gb|AF040709.1|AF040709 Homo sapiens putative tumor suppressor gene 26 protein alpha 2 delta calcium channel subunit mRNA, complete cds Length = 5482 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 272 cacgccgtcgacctcctgctc 292 ||||||||||||||||||||| Sbjct: 432 cacgccgtcgacctcctgctc 412
>emb|AL928756.4|CNS08CBT Oryza sativa chromosome 12, . BAC OSJNBb0077O07 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 132703 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 93 gcgccctccgcctccgcctcgtcct 117 ||||| ||||||||||||||||||| Sbjct: 109105 gcgccatccgcctccgcctcgtcct 109129 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 93 gcgccctccgcctccgcctcgtcc 116 ||||| |||||||||||||||||| Sbjct: 108889 gcgccatccgcctccgcctcgtcc 108912
>emb|AL606613.3|OSJN00051 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0084K20, complete sequence Length = 116983 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 92 cgcgccctccgcctccgcctcgtcc 116 |||| |||||||||||||||||||| Sbjct: 66285 cgcggcctccgcctccgcctcgtcc 66261
>emb|AL606683.3|OSJN00089 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0083N12, complete sequence Length = 160989 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 93 gcgccctccgcctccgcctcgtcct 117 ||||| ||||||||||||||||||| Sbjct: 61562 gcgccgtccgcctccgcctcgtcct 61538
>gb|AF042793.1|AF042793 Homo sapiens alpha 2 delta calcium channel subunit isoform II mRNA, complete cds Length = 5279 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 272 cacgccgtcgacctcctgctc 292 ||||||||||||||||||||| Sbjct: 229 cacgccgtcgacctcctgctc 209
>gb|AF042792.1|AF042792 Homo sapiens alpha 2 delta calcium channel subunit isoform I mRNA, complete cds Length = 5463 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 272 cacgccgtcgacctcctgctc 292 ||||||||||||||||||||| Sbjct: 413 cacgccgtcgacctcctgctc 393
>emb|Z84494.1|HSLUCA7 Human DNA sequence from clone XXcos-7 on chromosome 3, complete sequence Length = 16950 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 272 cacgccgtcgacctcctgctc 292 ||||||||||||||||||||| Sbjct: 15113 cacgccgtcgacctcctgctc 15093
>dbj|AB011130.1| Homo sapiens mRNA for KIAA0558 protein, partial cds Length = 5303 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 272 cacgccgtcgacctcctgctc 292 ||||||||||||||||||||| Sbjct: 253 cacgccgtcgacctcctgctc 233
>ref|XM_629861.1| Dictyostelium discoideum hypothetical protein (DDB0184259), partial mRNA Length = 1569 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 321 gcgccaacaacaccatcacc 340 |||||||||||||||||||| Sbjct: 421 gcgccaacaacaccatcacc 440
>ref|XM_481214.1| Oryza sativa (japonica cultivar-group), mRNA Length = 762 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 93 gcgccctccgcctccgcctc 112 |||||||||||||||||||| Sbjct: 250 gcgccctccgcctccgcctc 269
>ref|XM_481746.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1833 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 142 cctcctgccgccggccgctgccgc 165 ||||||||||||| |||||||||| Sbjct: 206 cctcctgccgccgaccgctgccgc 229
>ref|XM_464167.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1389 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 97 cctccgcctccgcctcgtcc 116 |||||||||||||||||||| Sbjct: 155 cctccgcctccgcctcgtcc 136
>gb|BT018765.1| Zea mays clone EL01N0524E08.d mRNA sequence Length = 1570 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 98 ctccgcctccgcctcgtcct 117 |||||||||||||||||||| Sbjct: 214 ctccgcctccgcctcgtcct 195
>gb|AC135558.6| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0007C02, complete sequence Length = 148265 Score = 40.1 bits (20), Expect = 4.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 87 cccgtcgcgccctccgcctccgcctcgt 114 |||||||| |||||||||||||||||| Sbjct: 115975 cccgtcgccgcctccgcctccgcctcgt 116002
>ref|XM_869857.1| PREDICTED: Bos taurus similar to Calcium/calmodulin-dependent protein kinase type IV (CAM kinase-GR) (CaMK IV) (LOC617573), mRNA Length = 474 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 104 ctccgcctcgtcctgctcct 123 |||||||||||||||||||| Sbjct: 27 ctccgcctcgtcctgctcct 46
>gb|DQ145546.1| Sinorhizobium meliloti plasmid pSmeSM11a, complete sequence Length = 144170 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 233 gtcacccgcctcgccgggatcttc 256 ||||||||||||||||| |||||| Sbjct: 68749 gtcacccgcctcgccggcatcttc 68726
>ref|XM_322483.1| Neurospora crassa OR74A predicted protein (NCU00398.1) partial mRNA Length = 2028 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 222 cgcgcttcatcgtcacccgc 241 |||||||||||||||||||| Sbjct: 8 cgcgcttcatcgtcacccgc 27
>ref|XM_952191.1| Neurospora crassa OR74A hypothetical protein (NCU00398.1) partial mRNA Length = 2028 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 222 cgcgcttcatcgtcacccgc 241 |||||||||||||||||||| Sbjct: 8 cgcgcttcatcgtcacccgc 27
>ref|XM_858991.1| PREDICTED: Canis familiaris similar to membrane associated DNA binding protein, transcript variant 5 (LOC491344), mRNA Length = 3873 Score = 40.1 bits (20), Expect = 4.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 96 ccctccgcctccgcctcgtcctgctcct 123 ||||||||||||||||| |||| ||||| Sbjct: 36 ccctccgcctccgcctcctcctcctcct 9
>ref|XM_858975.1| PREDICTED: Canis familiaris similar to membrane associated DNA binding protein, transcript variant 4 (LOC491344), mRNA Length = 1004 Score = 40.1 bits (20), Expect = 4.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 96 ccctccgcctccgcctcgtcctgctcct 123 ||||||||||||||||| |||| ||||| Sbjct: 36 ccctccgcctccgcctcctcctcctcct 9
>ref|XM_846476.1| PREDICTED: Canis familiaris similar to membrane associated DNA binding protein, transcript variant 2 (LOC491344), mRNA Length = 4358 Score = 40.1 bits (20), Expect = 4.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 96 ccctccgcctccgcctcgtcctgctcct 123 ||||||||||||||||| |||| ||||| Sbjct: 36 ccctccgcctccgcctcctcctcctcct 9
>emb|AL671309.6| Human DNA sequence from clone RP11-409O11 on chromosome 9 Contains the 5' UTR of the TMEM2 gene for transmembrane protein 2, the 3' end of a novel gene (CGI-67) and a CpG island, complete sequence Length = 117976 Score = 40.1 bits (20), Expect = 4.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 96 ccctccgcctccgcctcgtcctgctcct 123 ||||||||||||||||| |||| ||||| Sbjct: 12446 ccctccgcctccgcctcctcctcctcct 12473
>gb|CP000088.1| Thermobifida fusca YX, complete genome Length = 3642249 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 149 ccgccggccgctgccgcggg 168 |||||||||||||||||||| Sbjct: 292939 ccgccggccgctgccgcggg 292920
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 149 ccgccggccgctgccgcggggccg 172 |||||||||||||||||| ||||| Sbjct: 5403395 ccgccggccgctgccgcgcggccg 5403372 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 136 cggcgccctcctgccgccggccgc 159 |||||||||||| ||||||||||| Sbjct: 3363677 cggcgccctcctcccgccggccgc 3363700
>gb|AC104510.6| Drosophila melanogaster X BAC RP98-26J12 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 168583 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 94 cgccctccgcctccgcctcg 113 |||||||||||||||||||| Sbjct: 54247 cgccctccgcctccgcctcg 54266
>gb|AE005759.1| Caulobacter crescentus CB15 section 85 of 359 of the complete genome Length = 12748 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 207 tctgcccctactgctcgcgc 226 |||||||||||||||||||| Sbjct: 9612 tctgcccctactgctcgcgc 9593
>ref|NM_132457.1| Drosophila melanogaster CG11122-RA (CG11122), mRNA Length = 11076 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 94 cgccctccgcctccgcctcg 113 |||||||||||||||||||| Sbjct: 2638 cgccctccgcctccgcctcg 2619
>gb|AC008413.7| Homo sapiens chromosome 5 clone CTC-281M20, complete sequence Length = 143200 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 331 caccatcacctgccagcatg 350 |||||||||||||||||||| Sbjct: 3037 caccatcacctgccagcatg 3018
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 4.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 87 cccgtcgcgccctccgcctccgcctcgt 114 |||||||| |||||||||||||||||| Sbjct: 11778909 cccgtcgccgcctccgcctccgcctcgt 11778882 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 93 gcgccctccgcctccgcctcgtcc 116 ||||| |||||||||||||||||| Sbjct: 371465 gcgccatccgcctccgcctcgtcc 371488
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 97 cctccgcctccgcctcgtcc 116 |||||||||||||||||||| Sbjct: 2664593 cctccgcctccgcctcgtcc 2664574
>gb|AC027316.3|AC027316 Homo sapiens chromosome 5 clone CTC-304C4, complete sequence Length = 112361 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 331 caccatcacctgccagcatg 350 |||||||||||||||||||| Sbjct: 45857 caccatcacctgccagcatg 45838
>dbj|AP004574.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0702G08 Length = 144596 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 142 cctcctgccgccggccgctgccgc 165 ||||||||||||| |||||||||| Sbjct: 35967 cctcctgccgccgaccgctgccgc 35990
>dbj|AP005191.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0479D12 Length = 148362 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 97 cctccgcctccgcctcgtcc 116 |||||||||||||||||||| Sbjct: 66815 cctccgcctccgcctcgtcc 66796
>dbj|AP004158.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1118_F05 Length = 134247 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 93 gcgccctccgcctccgcctc 112 |||||||||||||||||||| Sbjct: 69643 gcgccctccgcctccgcctc 69624
>dbj|AK068931.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023003E02, full insert sequence Length = 1389 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 97 cctccgcctccgcctcgtcc 116 |||||||||||||||||||| Sbjct: 155 cctccgcctccgcctcgtcc 136
>gb|AE003485.3| Drosophila melanogaster chromosome X, section 37 of 74 of the complete sequence Length = 283075 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 94 cgccctccgcctccgcctcg 113 |||||||||||||||||||| Sbjct: 34440 cgccctccgcctccgcctcg 34459
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 4.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 87 cccgtcgcgccctccgcctccgcctcgt 114 |||||||| |||||||||||||||||| Sbjct: 11857320 cccgtcgccgcctccgcctccgcctcgt 11857293 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 93 gcgccctccgcctccgcctcgtcc 116 ||||| |||||||||||||||||| Sbjct: 371465 gcgccatccgcctccgcctcgtcc 371488
>emb|AL954853.5|CNS08CD7 Oryza sativa chromosome 12, . BAC OSJNBb0071I17 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 159056 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 89 cgtcgcgccctccgcctccgcctc 112 ||||||| |||||||||||||||| Sbjct: 85430 cgtcgcgacctccgcctccgcctc 85453
>emb|BX000497.1|CNS08CDN Oryza sativa chromosome 11, . BAC OSJNBa0010K05 of library OSJNBa from chromosome 11 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 164143 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 93 gcgccctccgcctccgcctcgtcc 116 ||||| |||||||||||||||||| Sbjct: 78783 gcgccatccgcctccgcctcgtcc 78806
>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome Length = 3566135 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 129 ccgtcatcggcgccctcctg 148 |||||||||||||||||||| Sbjct: 320272 ccgtcatcggcgccctcctg 320253
>gb|DQ092943.1| Cistus chinamadensis voucher 144BGA04 internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence Length = 645 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 89 cgtcgcgccctccgcctccgcctc 112 |||||| ||||||||||||||||| Sbjct: 423 cgtcgccccctccgcctccgcctc 446
>gb|DQ092942.1| Cistus chinamadensis voucher 44BGA03 internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence Length = 626 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 89 cgtcgcgccctccgcctccgcctc 112 |||||| ||||||||||||||||| Sbjct: 423 cgtcgccccctccgcctccgcctc 446
>gb|DQ092941.1| Cistus ochreatus voucher 150BGA04 internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence Length = 560 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 89 cgtcgcgccctccgcctccgcctc 112 |||||| ||||||||||||||||| Sbjct: 423 cgtcgccccctccgcctccgcctc 446
>gb|DQ092940.1| Cistus symphytifolius voucher 143BGA04 internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence Length = 645 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 89 cgtcgcgccctccgcctccgcctc 112 |||||| ||||||||||||||||| Sbjct: 423 cgtcgccccctccgcctccgcctc 446
>gb|DQ092939.1| Cistus symphytifolius voucher 263PV02 internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence Length = 645 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 89 cgtcgcgccctccgcctccgcctc 112 |||||| ||||||||||||||||| Sbjct: 423 cgtcgccccctccgcctccgcctc 446
>emb|Y12661.1|HSNEURVGF H.sapiens vgf gene Length = 3038 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 97 cctccgcctccgcctcgtcctgct 120 |||||||||||||||| ||||||| Sbjct: 2506 cctccgcctccgcctcctcctgct 2483 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,252,542 Number of Sequences: 3902068 Number of extensions: 2252542 Number of successful extensions: 55536 Number of sequences better than 10.0: 89 Number of HSP's better than 10.0 without gapping: 99 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 53665 Number of HSP's gapped (non-prelim): 1871 length of query: 367 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 345 effective length of database: 17,147,199,772 effective search space: 5915783921340 effective search space used: 5915783921340 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
