ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baet101a02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PGLR2_JUNAS (Q9FY19) Polygalacturonase precursor (PG) (EC 3.2.1.... 30 1.7
2YRPE_BACSU (O05410) Hypothetical protein yrpE 29 2.9
3K502_ACTCH (P43394) Fruit protein PKIWI502 28 6.4

>PGLR2_JUNAS (Q9FY19) Polygalacturonase precursor (PG) (EC 3.2.1.15) (Pectinase)|
           (Major pollen allergen Jun a 2)
          Length = 507

 Score = 30.0 bits (66), Expect = 1.7
 Identities = 10/39 (25%), Positives = 22/39 (56%)
 Frame = +2

Query: 95  GPAEPHLSYKIHQHSSSYPQPRDFPSEQLYHAYFAIQRF 211
           GP +PH S+K+    ++YP P  + + +++  +  +  F
Sbjct: 111 GPCQPHFSFKVDGTIAAYPDPAKWKNSKIWMHFARLTDF 149



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>YRPE_BACSU (O05410) Hypothetical protein yrpE|
          Length = 251

 Score = 29.3 bits (64), Expect = 2.9
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +2

Query: 128 HQHSSSYPQPRDFPSEQLYHAYFAIQRFKNTITSD 232
           H+HS  +    D  +E++Y  YF   + K+ + SD
Sbjct: 59  HEHSHDHSHAHDEETEKIYEGYFKNSQVKDRLLSD 93



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>K502_ACTCH (P43394) Fruit protein PKIWI502|
          Length = 317

 Score = 28.1 bits (61), Expect = 6.4
 Identities = 16/47 (34%), Positives = 22/47 (46%)
 Frame = +1

Query: 91  SRPR*ATPVL*DTPAFFLVPTAT*LPKRAALPRILRHPAIQEHHHLR 231
           SRP  + P L   P+  L  + +  P        LRHP ++ HHH R
Sbjct: 6   SRPSLSRPSLSRHPSLTLHSSLSHAPPHHRPVAFLRHPTLRYHHHGR 52


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,779,314
Number of Sequences: 219361
Number of extensions: 555884
Number of successful extensions: 1641
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1608
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1640
length of database: 80,573,946
effective HSP length: 53
effective length of database: 68,947,813
effective search space used: 1654747512
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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