ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baet101a02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC137741.5| Homo sapiens chromosome 8, clone CTD-2059D3, comp... 44 0.19
2dbj|AP006543.1| Homo sapiens genomic DNA, chromosome 8p12, clone... 44 0.19
3dbj|AP006180.2| Homo sapiens genomic DNA, chromosome 8p12, clone... 44 0.19
4gb|AC005348.1| Homo sapiens chromosome 5, BAC clone 118L13 (LBNL... 42 0.76
5gb|AY111915.1| Zea mays CL12505_1 mRNA sequence 42 0.76
6emb|AL928601.6| Mouse DNA sequence from clone RP23-88B5 on chrom... 42 0.76
7dbj|AK085199.1| Mus musculus 13 days embryo stomach cDNA, RIKEN ... 40 3.0
8gb|AC119995.22| Mus musculus chromosome 3, clone RP24-120B18, co... 40 3.0
9emb|AL691485.9| Mouse DNA sequence from clone RP23-26D14 on chro... 40 3.0

>gb|AC137741.5| Homo sapiens chromosome 8, clone CTD-2059D3, complete sequence
          Length = 117100

 Score = 44.1 bits (22), Expect = 0.19
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 93    caggccccgctgagccacacct 114
             ||||||||||||||||||||||
Sbjct: 16264 caggccccgctgagccacacct 16243



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>dbj|AP006543.1| Homo sapiens genomic DNA, chromosome 8p12, clone: KB1250F11, complete
             sequence
          Length = 98657

 Score = 44.1 bits (22), Expect = 0.19
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 93    caggccccgctgagccacacct 114
             ||||||||||||||||||||||
Sbjct: 56180 caggccccgctgagccacacct 56201



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>dbj|AP006180.2| Homo sapiens genomic DNA, chromosome 8p12, clone: KB1746H11, complete
            sequence
          Length = 26842

 Score = 44.1 bits (22), Expect = 0.19
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 93   caggccccgctgagccacacct 114
            ||||||||||||||||||||||
Sbjct: 3282 caggccccgctgagccacacct 3303



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>gb|AC005348.1| Homo sapiens chromosome 5, BAC clone 118L13 (LBNL H176), complete
           sequence
          Length = 84132

 Score = 42.1 bits (21), Expect = 0.76
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 138 cttcctcgtacccacagccac 158
           |||||||||||||||||||||
Sbjct: 726 cttcctcgtacccacagccac 746



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>gb|AY111915.1| Zea mays CL12505_1 mRNA sequence
          Length = 596

 Score = 42.1 bits (21), Expect = 0.76
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 200 atccagcgattcaagaacaccatca 224
           |||||||| ||||||||||||||||
Sbjct: 249 atccagcgcttcaagaacaccatca 273



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>emb|AL928601.6| Mouse DNA sequence from clone RP23-88B5 on chromosome 11, complete
             sequence
          Length = 55129

 Score = 42.1 bits (21), Expect = 0.76
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 121   taagatacaccagcattcttc 141
             |||||||||||||||||||||
Sbjct: 14591 taagatacaccagcattcttc 14571



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>dbj|AK085199.1| Mus musculus 13 days embryo stomach cDNA, RIKEN full-length enriched
            library, clone:D530008E22 product:unclassifiable, full
            insert sequence
          Length = 2475

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 59   ttctttctgctcacttccgt 78
            ||||||||||||||||||||
Sbjct: 2004 ttctttctgctcacttccgt 2023



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>gb|AC119995.22| Mus musculus chromosome 3, clone RP24-120B18, complete sequence
          Length = 182140

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 59    ttctttctgctcacttccgt 78
             ||||||||||||||||||||
Sbjct: 27489 ttctttctgctcacttccgt 27470



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>emb|AL691485.9| Mouse DNA sequence from clone RP23-26D14 on chromosome 3, complete
             sequence
          Length = 67491

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 59    ttctttctgctcacttccgt 78
             ||||||||||||||||||||
Sbjct: 46564 ttctttctgctcacttccgt 46583


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,571,969
Number of Sequences: 3902068
Number of extensions: 1571969
Number of successful extensions: 25624
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 25615
Number of HSP's gapped (non-prelim): 9
length of query: 233
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 211
effective length of database: 17,147,199,772
effective search space: 3618059151892
effective search space used: 3618059151892
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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