>DRS1_YEAST (P32892) ATP-dependent RNA helicase DRS1 (EC 3.6.1.-) (Deficiency|
           of ribosomal subunits protein 1)
          Length = 752

 Score = 30.0 bits (66), Expect = 2.7
 Identities = 16/33 (48%), Positives = 22/33 (66%), Gaps = 4/33 (12%)
 Frame = +2

Query: 356 SRILSSLS----TTNSDPRRRREIKARGHGARA 442
           S++L +LS     TNS  R+R E KA G+GAR+
Sbjct: 686 SKVLGALSRNKKVTNSKKRKREEAKADGNGARS 718

>OPA_DROME (P39768) Pair-rule protein odd-paired|
          Length = 609

 Score = 28.9 bits (63), Expect = 6.0
 Identities = 25/74 (33%), Positives = 32/74 (43%), Gaps = 2/74 (2%)
 Frame = -2

Query: 409 SPPPGIAVGCAER*QDPRF*GGTREKRWVESYS--SGISLAPVRAPTYPTPLKSFHKVGL 236
           S    I  G A+     R  G       V S S  SGI  +P    + P P+   H V L
Sbjct: 394 SSSSSIITGGAQTPPSTRLDGSAGSSSGVSSLSGGSGIKSSPHSIKSEPNPM---HSVHL 450

Query: 235 ESSSTGSSFPADSA 194
            +SS+GSS  A S+
Sbjct: 451 GASSSGSSSTASSS 464

>COG1_MOUSE (Q9Z160) Conserved oligomeric Golgi complex component 1 (Low|
           density lipoprotein receptor defect B-complementing
           protein)
          Length = 980

 Score = 28.9 bits (63), Expect = 6.0
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +2

Query: 149 SLSTIQRNHSQGNGLGGISGERRPC 223
           +L T+ R H  G G+G + GE + C
Sbjct: 293 TLETVTRQHPTGKGIGALQGEMKLC 317

>ROM1_YEAST (P53046) RHO1 GDP-GTP exchange protein 1 (Protein kinase C|
           suppressor SKC1)
          Length = 1155

 Score = 28.9 bits (63), Expect = 6.0
 Identities = 26/106 (24%), Positives = 41/106 (38%), Gaps = 12/106 (11%)
 Frame = -2

Query: 292 PVRAPTYPTPLKSFHKVGLESS--------STGSSFPADSAKPVPLAVVSLDSRQGQWES 137
           P +  T PTP  + H + L SS        ST S F  +S K       +  +   Q+  
Sbjct: 172 PNQLSTPPTPKSAGHTMELHSSFNGKHSSSSTSSLFALESLKTQNRRSSNSSNHSSQYRR 231

Query: 136 R*SIHARH*LDDE----AFGYLKRVIVTPAVYPRLVEFLHFDIQST 11
             + H RH    +    +   +  +  TP VYP L+  +    + T
Sbjct: 232 HTNQHQRHHSRSKSSPVSLTEISMIKGTPLVYPALLSLIAIKFKQT 277

>BRE1_GIBZE (Q4I7N9) Ubiquitin-protein ligase BRE1 (EC 6.3.2.-)|
          Length = 703

 Score = 28.5 bits (62), Expect = 7.9
 Identities = 19/69 (27%), Positives = 37/69 (53%), Gaps = 6/69 (8%)
 Frame = -2

Query: 433 AMAASLDLSPPPG-IAVGCAER*QDPRF*GGTREKRWVESYSSGISLAPV-----RAPTY 272
           A++++ +++PP   +AV  ++   DP      +E+ WVE+Y+ G     +     +A TY
Sbjct: 8   AISSADEIAPPSKRVAVNGSKAKDDPL---DMKEESWVEAYTKGAIYRQMQEYSRKASTY 64

Query: 271 PTPLKSFHK 245
            + L+  HK
Sbjct: 65  ESRLEELHK 73


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,403,349
Number of Sequences: 219361
Number of extensions: 1187519
Number of successful extensions: 3214
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3210
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2677159704
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)