>dbj|AB085817.1| Hordeum vulgare HvEMF2a mRNA, complete cds
          Length = 2842

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 181 ctctggctgctaccgtagatctagcc 206
           ||||||| ||||||||||||||||||
Sbjct: 248 ctctggccgctaccgtagatctagcc 273

>gb|AF280950.1| Uncultured bacterium clone JS10 16S ribosomal RNA gene, partial
           sequence
          Length = 410

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 89  cttcgccgccggcgttcttcccaa 112
           ||||||| ||||||||||||||||
Sbjct: 306 cttcgccnccggcgttcttcccaa 283

>emb|CR709987.2|CNS0GARZ Tetraodon nigroviridis full-length cDNA
          Length = 1658

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 369 aggagcagcagagggcaagag 389
           |||||||||||||||||||||
Sbjct: 502 aggagcagcagagggcaagag 522

>emb|AJ607069.1| Uncultured bacterium partial 16S rRNA gene, clone NAT114
          Length = 376

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 90  ttcgccgccggcgttcttccc 110
           |||||||||||||||||||||
Sbjct: 199 ttcgccgccggcgttcttccc 179

>gb|AY555803.1| Uncultured bacterium clone PK317 16S ribosomal RNA gene, partial
           sequence
          Length = 1490

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 90  ttcgccgccggcgttcttccc 110
           |||||||||||||||||||||
Sbjct: 718 ttcgccgccggcgttcttccc 698

>emb|BX294705.2|CNS09S7Z Uncultured bacterium partial 16S rRNA gene from clone
           025F10_P_BA_P3
          Length = 1318

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 90  ttcgccgccggcgttcttccc 110
           |||||||||||||||||||||
Sbjct: 649 ttcgccgccggcgttcttccc 629

>emb|BX294785.1|CNS09S67 Uncultured bacterium partial 16S rRNA gene from clone
           028B09_P_BN_P5
          Length = 1318

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 90  ttcgccgccggcgttcttccc 110
           |||||||||||||||||||||
Sbjct: 649 ttcgccgccggcgttcttccc 629

>gb|CP000153.1| Thiomicrospira denitrificans ATCC 33889, complete genome
          Length = 2201561

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 149     caactacaaaaagagcagtt 168
               ||||||||||||||||||||
Sbjct: 1769459 caactacaaaaagagcagtt 1769478

>ref|XM_414801.1| PREDICTED: Gallus gallus similar to homologue of S70447 F1Fo-ATP
           synthase complex Fo membrane domain f subunit
           (LOC416495), mRNA
          Length = 2536

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 374 cagcagagggcaagaggctcggag 397
           |||||||||||| |||||||||||
Sbjct: 154 cagcagagggcacgaggctcggag 131

>gb|DQ478749.1| Uncultured bacterium clone CLONG96 16S ribosomal RNA gene, partial
           sequence
          Length = 1477

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 89  cttcgccgccggcgttcttcccaa 112
           |||||||||||| |||||||||||
Sbjct: 688 cttcgccgccggtgttcttcccaa 665

>gb|AF424220.1| Uncultured delta proteobacterium MERTZ_2CM_256 16S ribosomal RNA
           gene, partial sequence
          Length = 996

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 89  cttcgccgccggcgttcttcccaa 112
           |||||||||||| |||||||||||
Sbjct: 212 cttcgccgccggtgttcttcccaa 189

>gb|AF507897.3| Uncultured Verrucomicrobia bacterium clone ML623J-33 16S ribosomal
           RNA gene, partial sequence
          Length = 514

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 89  cttcgccgccggcgttcttc 108
           ||||||||||||||||||||
Sbjct: 245 cttcgccgccggcgttcttc 226

>emb|AL390057.12| Human DNA sequence from clone RP11-26I18 on chromosome 6, complete
             sequence
          Length = 100578

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 217   tcttggataatcttggttcagttg 240
             ||||||||||| ||||||||||||
Sbjct: 92596 tcttggataatattggttcagttg 92619

>gb|AY122340.1| Uncultured bacterium clone III-24 16S ribosomal RNA gene, partial
           sequence
          Length = 368

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 89  cttcgccgccggcgttcttcccaa 112
           |||||||||||| |||||||||||
Sbjct: 193 cttcgccgccggtgttcttcccaa 170

>gb|AC109542.6| Rattus norvegicus 1 BAC CH230-270O15 (Children's Hospital Oakland
              Research Institute) complete sequence
          Length = 246913

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 367    caaggagcagcagagggcaa 386
              ||||||||||||||||||||
Sbjct: 126887 caaggagcagcagagggcaa 126906

>emb|AL008634.1|HS396D17 Human DNA sequence from clone RP3-396D17 on chromosome 1p33-35.3 Contains
              EST, STS, GSS, complete sequence
          Length = 152592

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 136    agtccccaaatcccaactac 155
              ||||||||||||||||||||
Sbjct: 101666 agtccccaaatcccaactac 101647

>gb|DQ125586.1| Uncultured bacterium clone AKAU3582 16S ribosomal RNA gene, partial
           sequence
          Length = 1467

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 89  cttcgccgccggcgttcttcccaa 112
           ||||||| ||||||||||||||||
Sbjct: 701 cttcgccaccggcgttcttcccaa 678

>emb|AL939111.1|SCO939111 Streptomyces coelicolor A3(2) complete genome; segment 8/29
          Length = 321250

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 345    cgccgcagcgcccggcggac 364
              ||||||||||||||||||||
Sbjct: 284258 cgccgcagcgcccggcggac 284239

>emb|AL450321.15| Mouse DNA sequence from clone RP23-232M10 on chromosome 13 Contains a
             novel gene, a non-POU domain containing octamer-binding
             protein (Nono) pseudogene, a Sin3-associated polypeptide
             18 (Sap18) pseudogene, the 5' end of a novel gene and a
             CpG island, complete sequence
          Length = 209175

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 137   gtccccaaatcccaactaca 156
             ||||||||||||||||||||
Sbjct: 88184 gtccccaaatcccaactaca 88203

>dbj|AB231065.1| Uncultured Clostridiales bacterium gene for 16S rRNA, partial
           sequence, clone:NkW01-017
          Length = 1356

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 89  cttcgccgccggcgttcttcccaa 112
           |||||||||||| |||||||||||
Sbjct: 696 cttcgccgccggtgttcttcccaa 673

>dbj|D14281.1|STMPSN22 Streptomyces flavovirens plasmid pSN22 DNA, complete sequence
          Length = 10992

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 346 gccgcagcgcccggcggacc 365
           ||||||||||||||||||||
Sbjct: 155 gccgcagcgcccggcggacc 174

>gb|AC006762.2| Caenorhabditis elegans cosmid Y42G9A, complete sequence
          Length = 30585

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 97    ccggcgttcttcccaactac 116
             ||||||||||||||||||||
Sbjct: 13978 ccggcgttcttcccaactac 13959

>dbj|AB088948.1| Uncultured Eubacteriaceae bacterium gene for 16S rRNA, partial
           sequence, clone:Rs-M09
          Length = 1315

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 89  cttcgccgccggcgttcttcccaa 112
           |||||||||||| |||||||||||
Sbjct: 658 cttcgccgccggtgttcttcccaa 635

>dbj|AB062845.1| Uncultured bacterium gene for 16S rRNA, partial sequence,
           clone:BCf9-13
          Length = 1390

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 89  cttcgccgccggcgttcttcccaa 112
           |||||||||||| |||||||||||
Sbjct: 716 cttcgccgccggtgttcttcccaa 693

>gb|AC144940.5| Mus musculus BAC clone RP23-429A10 from chromosome 9, complete sequence
          Length = 213669

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 20     gatccacatctccttcccta 39
              ||||||||||||||||||||
Sbjct: 196423 gatccacatctccttcccta 196442

>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 348     cgcagcgcccggcggacccc 367
               ||||||||||||||||||||
Sbjct: 1562457 cgcagcgcccggcggacccc 1562438

>gb|AC079245.35| Mus musculus strain C57BL/6J chromosome 9 clone rp23-426k2,
           complete sequence
          Length = 213098

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 20  gatccacatctccttcccta 39
           ||||||||||||||||||||
Sbjct: 655 gatccacatctccttcccta 674

>gb|AY499896.1| Uncultured alpha proteobacterium clone Nubeena268 16S ribosomal RNA
           gene, partial sequence
          Length = 999

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 89  cttcgccgccggcgttcttcccaa 112
           |||||||||||| |||||||||||
Sbjct: 212 cttcgccgccggtgttcttcccaa 189

>emb|AL845162.9| Mouse DNA sequence from clone RP23-35I8 on chromosome 2, complete
             sequence
          Length = 189829

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 367   caaggagcagcagagggcaagagg 390
             ||||||||||||||||||| ||||
Sbjct: 59755 caaggagcagcagagggcaggagg 59778


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,597,194
Number of Sequences: 3902068
Number of extensions: 3597194
Number of successful extensions: 73764
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 73674
Number of HSP's gapped (non-prelim): 90
length of query: 455
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 433
effective length of database: 17,147,199,772
effective search space: 7424737501276
effective search space used: 7424737501276
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)