>SUS_DROME (P22293) Protein suppressor of sable|
          Length = 1325

 Score = 34.7 bits (78), Expect = 0.16
 Identities = 30/99 (30%), Positives = 45/99 (45%), Gaps = 14/99 (14%)
 Frame = +2

Query: 188  VLVPASSSPES--RCAVRLLARDLVTSSSLLP*IGSAGCGLRMSSTSCLAPLAPRLPCAR 361
            ++ P+S S ++  RCA  + + DL T+             +R S+ S   P    LP   
Sbjct: 957  IMGPSSFSVDNIARCATTIASPDLETA-------------VRDSTPSSPPPSVVNLPSMS 1003

Query: 362  V-----RLPPPSAAAERPSLRFKPRG-------AAPTKG 442
            V     R+PPP+   E+P++R  PR         APTKG
Sbjct: 1004 VPPPSMRVPPPNIQVEKPTVRTDPRRDPRRAVLQAPTKG 1042

>LRIG2_HUMAN (O94898) Leucine-rich repeats and immunoglobulin-like domains|
           protein 2 precursor (LIG-2)
          Length = 1065

 Score = 34.7 bits (78), Expect = 0.16
 Identities = 21/53 (39%), Positives = 30/53 (56%)
 Frame = +2

Query: 224 CAVRLLARDLVTSSSLLP*IGSAGCGLRMSSTSCLAPLAPRLPCARVRLPPPS 382
           C  R+L+R L  + + L  + +AG GL  +  SC  PL   L C+R +LP PS
Sbjct: 16  CRSRVLSRLLFIAQTALLLLPAAGAGLCPAPCSCRIPL---LDCSRRKLPAPS 65

>CAC1A_MOUSE (P97445) Voltage-dependent P/Q-type calcium channel alpha-1A|
           subunit (Voltage-gated calcium channel alpha subunit
           Cav2.1) (Calcium channel, L type, alpha-1 polypeptide
           isoform 4) (Brain calcium channel I) (BI)
          Length = 2164

 Score = 33.5 bits (75), Expect = 0.35
 Identities = 22/53 (41%), Positives = 23/53 (43%), Gaps = 11/53 (20%)
 Frame = -2

Query: 142 AHPRRHARDSGVERAAP----REPGR-------SEFADGEQAPPRGAGCWDRE 17
           A PR  ARD    RA P    R PGR       SE    E APPR    WD +
Sbjct: 801 ARPRESARDPDARRAWPGSPERAPGREGPYGRESELQQREHAPPREHAPWDAD 853

>NCAP_NIPAV (Q9IK92) Nucleoprotein (Protein N) (Nucleocapsid protein)|
          Length = 532

 Score = 31.2 bits (69), Expect = 1.8
 Identities = 14/33 (42%), Positives = 22/33 (66%)
 Frame = +2

Query: 170 LSARARVLVPASSSPESRCAVRLLARDLVTSSS 268
           L+ + R+ VPA++SPE R  + L A D++ S S
Sbjct: 31  LTTKIRIFVPATNSPELRWELTLFALDVIRSPS 63

>NCAP_HENDV (O89339) Nucleoprotein (Protein N) (Nucleocapsid protein)|
          Length = 532

 Score = 31.2 bits (69), Expect = 1.8
 Identities = 14/33 (42%), Positives = 22/33 (66%)
 Frame = +2

Query: 170 LSARARVLVPASSSPESRCAVRLLARDLVTSSS 268
           L+ + R+ VPA++SPE R  + L A D++ S S
Sbjct: 31  LTTKIRIFVPATNSPELRWELTLFALDVIRSPS 63

>RBPMS_XENLA (Q9YGP5) RNA-binding protein with multiple splicing homolog|
           (RBP-MS) (HEart, RRM Expressed Sequence) (Hermes)
          Length = 196

 Score = 31.2 bits (69), Expect = 1.8
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = +2

Query: 329 APLAPRLPCARVRLPPPSAAAERPSLRFKPRGAAPTKGWR 448
           A LAP +P A    P  +AAA    +R+ P   A  +GW+
Sbjct: 152 AELAPAIPHAAFTYPAAAAAALHAQMRWYPPSEATQQGWK 191

>ICP0_HHV2H (P28284) Trans-acting transcriptional protein ICP0 (VMW118 protein)|
          Length = 825

 Score = 30.8 bits (68), Expect = 2.3
 Identities = 28/82 (34%), Positives = 33/82 (40%)
 Frame = +2

Query: 188 VLVPASSSPESRCAVRLLARDLVTSSSLLP*IGSAGCGLRMSSTSCLAPLAPRLPCARVR 367
           +++  S  P  R          V+SSS     G  G GL  SS     P A   P  RVR
Sbjct: 363 IVISDSPPPSPRRPAGPGPLSFVSSSSAQVSSGPGGGGLPQSSGRAARPRAAVAP--RVR 420

Query: 368 LPPPSAAAERPSLRFKPRGAAP 433
            PP +AAA   S      G AP
Sbjct: 421 SPPRAAAAPVVSASADAAGPAP 442

>CAC1A_RAT (P54282) Voltage-dependent P/Q-type calcium channel alpha-1A subunit|
            (Voltage-gated calcium channel alpha subunit Cav2.1)
            (Calcium channel, L type, alpha-1 polypeptide, isoform 4)
            (Brain calcium channel I) (BI) (RAT brain class A)
            (RBA-I)
          Length = 2212

 Score = 30.8 bits (68), Expect = 2.3
 Identities = 22/53 (41%), Positives = 23/53 (43%), Gaps = 11/53 (20%)
 Frame = -2

Query: 142  AHPRRHARDSGVERAAP----REPGR-------SEFADGEQAPPRGAGCWDRE 17
            A PR  ARD    RA P    R PGR       SE    E APPR    WD +
Sbjct: 849  ARPRESARDPDARRAWPSSPERAPGREGPYGRESEPQQREHAPPREHVPWDAD 901

>GDF1_HUMAN (P27539) Embryonic growth/differentiation factor 1 precursor|
           (GDF-1)
          Length = 372

 Score = 30.0 bits (66), Expect = 3.9
 Identities = 21/49 (42%), Positives = 25/49 (51%), Gaps = 7/49 (14%)
 Frame = +2

Query: 326 LAPLAPRLPCARVRLPPPSAAA--ERPSLRFKPRGA-----APTKGWRL 451
           LA L P LP  R  +PP  AAA  +   LR +P+GA      P   WRL
Sbjct: 17  LALLLPSLPLTRAPVPPGPAAALLQALGLRDEPQGAPRLRPVPPVMWRL 65

>FXL17_MOUSE (Q9QZN1) F-box/LRR-repeat protein 17 (F-box and leucine-rich repeat|
           protein 17) (F-box only protein 13) (Fragment)
          Length = 462

 Score = 30.0 bits (66), Expect = 3.9
 Identities = 25/75 (33%), Positives = 28/75 (37%), Gaps = 1/75 (1%)
 Frame = +2

Query: 158 CCGLLSARARVLVPASSSPESRCA-VRLLARDLVTSSSLLP*IGSAGCGLRMSSTSCLAP 334
           CC         L PA +SP S CA +   A D V +    P   SA          C  P
Sbjct: 7   CCQAPEQPPPPLCPAPASPASECAPIVAAAGDTVRAGGTAP--SSAQQQPESGDADCQEP 64

Query: 335 LAPRLPCARVRLPPP 379
             P  PC   R PPP
Sbjct: 65  --PENPCDCHREPPP 77

>ULK2_HUMAN (Q8IYT8) Serine/threonine-protein kinase ULK2 (EC 2.7.11.1)|
           (Unc-51-like kinase 2)
          Length = 1036

 Score = 29.3 bits (64), Expect = 6.7
 Identities = 28/91 (30%), Positives = 38/91 (41%), Gaps = 1/91 (1%)
 Frame = +2

Query: 164 GLLSARARVLVPASSSPESRCAVRLLARDLVTSSSLLP*IGSAGCGLRMSSTSCL-APLA 340
           G  ++   VL    S P S  A       L T ++ +    S G    MS   C+ +P  
Sbjct: 715 GTAASSKAVLFTVGSPPHSAAAPTCTHMFLRTRTTSVGPSNSGGSLCAMSGRVCVGSPPG 774

Query: 341 PRLPCARVRLPPPSAAAERPSLRFKPRGAAP 433
           P    +     PP A A  PSLR+ P GA+P
Sbjct: 775 PGFGSS-----PPGAEAA-PSLRYVPYGASP 799

>EPSA2_RALSO (Q45407) EPS I polysaccharide export outer membrane protein epsA|
           precursor
          Length = 377

 Score = 29.3 bits (64), Expect = 6.7
 Identities = 17/42 (40%), Positives = 21/42 (50%)
 Frame = +1

Query: 172 VRTRPRPGPRLVVTGVALRRSPPCPRPRDLLLSPALNRFCGL 297
           VR  PR   ++ VTG  +R S   PR   L LS AL    G+
Sbjct: 256 VRVEPREDSKVFVTGEVVRPSTVLPRNGKLTLSEALGEAGGV 297

>NRG1_XENLA (O93383) Pro-neuregulin-1, membrane-bound isoform precursor|
           (Pro-NRG1) [Contains: Neuregulin-1]
          Length = 677

 Score = 28.9 bits (63), Expect = 8.7
 Identities = 13/38 (34%), Positives = 17/38 (44%)
 Frame = +2

Query: 305 RMSSTSCLAPLAPRLPCARVRLPPPSAAAERPSLRFKP 418
           RMS      P++P+ PC     P  S A   PS+   P
Sbjct: 453 RMSPVEFKTPISPKSPCLETSPPESSLAVSVPSVAVSP 490


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,782,540
Number of Sequences: 219361
Number of extensions: 965439
Number of successful extensions: 3605
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 3366
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3601
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3869946934
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)