ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name baet09h08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK119933.1| Oryza sativa (japonica cultivar-group) cDNA clon... 337 6e-90
2emb|BX546502.7| Zebrafish DNA sequence from clone RP71-62P22 in ... 46 0.034
3ref|NM_166068.1| Drosophila melanogaster CG10151-RB, transcript ... 44 0.13
4ref|NM_166067.1| Drosophila melanogaster CG10151-RA, transcript ... 44 0.13
5ref|NM_137140.2| Drosophila melanogaster CG10151-RC, transcript ... 44 0.13
6gb|AC007580.6| Drosophila melanogaster, chromosome 2R, region 50... 44 0.13
7gb|AY047541.1| Drosophila melanogaster GH05433 full length cDNA 44 0.13
8gb|AC010578.5|AC010578 Drosophila melanogaster, chromosome 2R, r... 44 0.13
9gb|AE003813.3| Drosophila melanogaster chromosome 2R, section 37... 44 0.13
10gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, com... 44 0.13
11dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 42 0.53
12dbj|AP003634.3| Oryza sativa (japonica cultivar-group) genomic D... 42 0.53
13ref|XM_483633.1| Oryza sativa (japonica cultivar-group), mRNA 40 2.1
14gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete ... 40 2.1
15ref|XM_543034.2| PREDICTED: Canis familiaris similar to Solute c... 40 2.1
16gb|AC117428.3| Homo sapiens 3 BAC RP11-66P11 (Roswell Park Cance... 40 2.1
17gb|AC055710.10| Homo sapiens 3 BAC RP11-307E22 (Roswell Park Can... 40 2.1
18gb|AF441442.1|AF441442 Serratia marcescens apoquinoprotein gluco... 40 2.1
19dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 40 2.1
20dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 2.1
21dbj|AP006176.3| Oryza sativa (japonica cultivar-group) genomic D... 40 2.1
22dbj|AP005592.2| Oryza sativa (japonica cultivar-group) genomic D... 40 2.1
23dbj|AP004163.3| Oryza sativa (japonica cultivar-group) genomic D... 40 2.1
24gb|AC003991.1|AC003991 Human BAC clone CTB-167B5 from 7q21, comp... 40 2.1
25dbj|AK061056.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 2.1
26gb|DQ065771.1| Polyangium cellulosum hypothetical protein gene, ... 40 2.1
27ref|NM_183994.1| Oryza sativa (japonica cultivar-group), predic... 38 8.3
28ref|NM_190029.1| Oryza sativa (japonica cultivar-group), predic... 38 8.3
29gb|AE014291.4| Brucella suis 1330 chromosome I, complete sequence 38 8.3
30gb|AC121297.20| Mus musculus chromosome 1, clone RP23-326H11, co... 38 8.3
31gb|CP000352.1| Ralstonia metallidurans CH34, complete genome 38 8.3
32gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete ... 38 8.3
33emb|CR628337.1| Legionella pneumophila str. Lens complete genome 38 8.3
34emb|CR628336.1| Legionella pneumophila str. Paris complete genome 38 8.3
35gb|AC151265.3| Mus musculus BAC clone RP24-372H7 from chromosome... 38 8.3
36emb|AJ308113.1|LFL308113 Lampetra fluviatilis mRNA for type II k... 38 8.3
37gb|AE012407.1| Xanthomonas campestris pv. campestris str. ATCC 3... 38 8.3
38gb|AF435056.1| Plasmodium vivax isolate SKOR-79 merozoite surfac... 38 8.3
39gb|AF435054.1| Plasmodium vivax isolate SKOR-67 merozoite surfac... 38 8.3
40dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete ... 38 8.3
41gb|AC009690.17| Homo sapiens chromosome 15, clone RP11-106M3, co... 38 8.3
42gb|AC021486.10| Homo sapiens chromosome , clone RP11-73I6, compl... 38 8.3
43gb|AC175205.2| Sporobolomyces roseus clone JGIBAIF-5L1, complete... 38 8.3
44gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, ... 38 8.3
45dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 38 8.3
46gb|AE009571.1| Brucella melitensis 16M chromosome I, section 128... 38 8.3
47dbj|AP003272.3| Oryza sativa (japonica cultivar-group) genomic D... 38 8.3
48dbj|AP003267.3| Oryza sativa (japonica cultivar-group) genomic D... 38 8.3
49dbj|AP003246.3| Oryza sativa (japonica cultivar-group) genomic D... 38 8.3
50dbj|AP003205.3| Oryza sativa (japonica cultivar-group) genomic D... 38 8.3
51dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 38 8.3
52gb|AF435638.1| Plasmodium vivax isolate SK4 merozoite surface pr... 38 8.3
53gb|AF435636.1| Plasmodium vivax isolate SK2 merozoite surface pr... 38 8.3
54gb|AF435635.1| Plasmodium vivax isolate SK1 merozoite surface pr... 38 8.3
55gb|AF435622.1| Plasmodium vivax isolate BP1 merozoite surface pr... 38 8.3
56gb|AF435620.1| Plasmodium vivax isolate BD9 merozoite surface pr... 38 8.3
57gb|AF435619.1| Plasmodium vivax isolate BD6 merozoite surface pr... 38 8.3
58gb|AF435617.1| Plasmodium vivax isolate BD2 merozoite surface pr... 38 8.3
59gb|AF435616.1| Plasmodium vivax isolate BD1 merozoite surface pr... 38 8.3
60gb|AF435611.1| Plasmodium vivax isolate TG46 merozoite surface p... 38 8.3
61gb|AF435608.1| Plasmodium vivax isolate TFF18 merozoite surface ... 38 8.3
62gb|AF435597.1| Plasmodium vivax isolate T107 merozoite surface p... 38 8.3
63dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome 38 8.3
64gb|AE017223.1| Brucella abortus biovar 1 str. 9-941 chromosome I... 38 8.3
65dbj|AP002536.2| Oryza sativa (japonica cultivar-group) genomic D... 38 8.3
66dbj|AP002819.1| Oryza sativa (japonica cultivar-group) genomic D... 38 8.3
67dbj|AP003852.2| Oryza sativa (japonica cultivar-group) genomic D... 38 8.3
68dbj|AP003075.2| Oryza sativa (japonica cultivar-group) genomic D... 38 8.3
69dbj|AK131098.1| Homo sapiens mRNA for FLJ00324 protein 38 8.3
70dbj|AK069585.1| Oryza sativa (japonica cultivar-group) cDNA clon... 38 8.3
71emb|CR925754.15| Zebrafish DNA sequence from clone CH211-148J16 ... 38 8.3
72emb|CT010473.14| Mouse DNA sequence from clone RP23-238D5 on chr... 38 8.3
73gb|AC153487.1| Taeniopygia guttata clone TG__Ba0319A15, complete... 38 8.3
74emb|AM040264.1| Brucella melitensis biovar Abortus chromosome I,... 38 8.3
75dbj|AB209434.1| Homo sapiens mRNA for BRUNO-like 6 RNA-binding p... 38 8.3 
>dbj|AK119933.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-184-A09, full
           insert sequence
          Length = 1094

 Score =  337 bits (170), Expect = 6e-90
 Identities = 170/170 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgcatgcaaacaaatcactagcgagccgcatacatcacatcacaaacgaagcgcggcac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   atgcatgcaaacaaatcactagcgagccgcatacatcacatcacaaacgaagcgcggcac 60

                                                                       
Query: 61  gcaatggcgccctcctcgtcgtctccactgccggcgtctccgctgctcgtgctgctgatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  gcaatggcgccctcctcgtcgtctccactgccggcgtctccgctgctcgtgctgctgatg 120

                                                             
Query: 121 gtgccgctcctgctcgccatggcgcgtccgtgctccggcgtggacgccat 170
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gtgccgctcctgctcgccatggcgcgtccgtgctccggcgtggacgccat 170
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>emb|BX546502.7| Zebrafish DNA sequence from clone RP71-62P22 in linkage group 25,
             complete sequence
          Length = 169168

 Score = 46.1 bits (23), Expect = 0.034
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                        
Query: 112   ctgctgatggtgccgctcctgctcgcc 138
             ||||||||||||||||| |||||||||
Sbjct: 64654 ctgctgatggtgccgctgctgctcgcc 64628
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>ref|NM_166068.1| Drosophila melanogaster CG10151-RB, transcript variant B (CG10151),
            mRNA
          Length = 2463

 Score = 44.1 bits (22), Expect = 0.13
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 109  gtgctgctgatggtgccgctcctgct 134
            |||||||||||||||| |||||||||
Sbjct: 1866 gtgctgctgatggtgctgctcctgct 1841
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>ref|NM_166067.1| Drosophila melanogaster CG10151-RA, transcript variant A (CG10151),
            mRNA
          Length = 2212

 Score = 44.1 bits (22), Expect = 0.13
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 109  gtgctgctgatggtgccgctcctgct 134
            |||||||||||||||| |||||||||
Sbjct: 1615 gtgctgctgatggtgctgctcctgct 1590
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>ref|NM_137140.2| Drosophila melanogaster CG10151-RC, transcript variant C (CG10151),
            mRNA
          Length = 2766

 Score = 44.1 bits (22), Expect = 0.13
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 109  gtgctgctgatggtgccgctcctgct 134
            |||||||||||||||| |||||||||
Sbjct: 2169 gtgctgctgatggtgctgctcctgct 2144
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>gb|AC007580.6| Drosophila melanogaster, chromosome 2R, region 50F-51C, BAC clone
              BACR07P02, complete sequence
          Length = 160920

 Score = 44.1 bits (22), Expect = 0.13
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 109    gtgctgctgatggtgccgctcctgct 134
              |||||||||||||||| |||||||||
Sbjct: 152966 gtgctgctgatggtgctgctcctgct 152991
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>gb|AY047541.1| Drosophila melanogaster GH05433 full length cDNA
          Length = 2337

 Score = 44.1 bits (22), Expect = 0.13
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 109  gtgctgctgatggtgccgctcctgct 134
            |||||||||||||||| |||||||||
Sbjct: 1626 gtgctgctgatggtgctgctcctgct 1601
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>gb|AC010578.5|AC010578 Drosophila melanogaster, chromosome 2R, region 51B-51C, BAC clone
             BACR03K23, complete sequence
          Length = 160346

 Score = 44.1 bits (22), Expect = 0.13
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 109   gtgctgctgatggtgccgctcctgct 134
             |||||||||||||||| |||||||||
Sbjct: 30635 gtgctgctgatggtgctgctcctgct 30660
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>gb|AE003813.3| Drosophila melanogaster chromosome 2R, section 37 of 73 of the complete
              sequence
          Length = 266851

 Score = 44.1 bits (22), Expect = 0.13
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 109    gtgctgctgatggtgccgctcctgct 134
              |||||||||||||||| |||||||||
Sbjct: 122978 gtgctgctgatggtgctgctcctgct 123003
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>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence
          Length = 3809201

 Score = 44.1 bits (22), Expect = 0.13
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                         
Query: 46      aacgaagcgcggcacgcaatggcgcc 71
               ||||||||||| ||||||||||||||
Sbjct: 2717742 aacgaagcgcgacacgcaatggcgcc 2717717
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 42.1 bits (21), Expect = 0.53
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 77       cgtcgtctccactgccggcgt 97
                |||||||||||||||||||||
Sbjct: 29537375 cgtcgtctccactgccggcgt 29537355



 Score = 38.2 bits (19), Expect = 8.3
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                      
Query: 98      ctccgctgctcgtgctgctgatg 120
               ||||||||||| |||||||||||
Sbjct: 3272549 ctccgctgctcctgctgctgatg 3272527
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>dbj|AP003634.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0655A07
          Length = 172473

 Score = 42.1 bits (21), Expect = 0.53
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 77     cgtcgtctccactgccggcgt 97
              |||||||||||||||||||||
Sbjct: 101881 cgtcgtctccactgccggcgt 101861
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>ref|XM_483633.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1327

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 123 gccgctcctgctcgccatggcgcg 146
           |||||| |||||||||||||||||
Sbjct: 95  gccgctgctgctcgccatggcgcg 72
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>gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete genome
          Length = 2584158

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 100    ccgctgctcgtgctgctgat 119
              ||||||||||||||||||||
Sbjct: 167055 ccgctgctcgtgctgctgat 167036
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>ref|XM_543034.2| PREDICTED: Canis familiaris similar to Solute carrier family 13,
           member 3 (Sodium-dependent high-affinity dicarboxylate
           transporter 2) (Na(+)/dicarboxylate cotransporter 3)
           (NaDC-3) (hNaDC3) (LOC485910), mRNA
          Length = 1806

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 102 gctgctcgtgctgctgatggtgccgctc 129
           |||||||||||||||| ||| |||||||
Sbjct: 48  gctgctcgtgctgctgttggcgccgctc 75
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>gb|AC117428.3| Homo sapiens 3 BAC RP11-66P11 (Roswell Park Cancer Institute Human
            BAC Library) complete sequence
          Length = 12446

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 2    tgcatgcaaacaaatcacta 21
            ||||||||||||||||||||
Sbjct: 1760 tgcatgcaaacaaatcacta 1779
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>gb|AC055710.10| Homo sapiens 3 BAC RP11-307E22 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 169964

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 2      tgcatgcaaacaaatcacta 21
              ||||||||||||||||||||
Sbjct: 169725 tgcatgcaaacaaatcacta 169744
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>gb|AF441442.1|AF441442 Serratia marcescens apoquinoprotein glucose dehydrogenase (GCD) gene,
            complete sequence; and unknown genes
          Length = 7718

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 109  gtgctgctgatggtgccgct 128
            ||||||||||||||||||||
Sbjct: 5917 gtgctgctgatggtgccgct 5936
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
               sequence
          Length = 22696651

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                           
Query: 80      cgtctccactgccggcgtctccgctgct 107
               |||| |||| ||||||||||||||||||
Sbjct: 4561958 cgtcgccaccgccggcgtctccgctgct 4561985



 Score = 40.1 bits (20), Expect = 2.1
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                           
Query: 80      cgtctccactgccggcgtctccgctgct 107
               |||| |||| ||||||||||||||||||
Sbjct: 4551967 cgtcgccaccgccggcgtctccgctgct 4551994
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 123      gccgctcctgctcgccatggcgcg 146
                |||||| |||||||||||||||||
Sbjct: 27371603 gccgctgctgctcgccatggcgcg 27371626
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>dbj|AP006176.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0681H07
          Length = 144722

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 80    cgtctccactgccggcgtctccgctgct 107
             |||| |||| ||||||||||||||||||
Sbjct: 14827 cgtcgccaccgccggcgtctccgctgct 14854



 Score = 40.1 bits (20), Expect = 2.1
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 80   cgtctccactgccggcgtctccgctgct 107
            |||| |||| ||||||||||||||||||
Sbjct: 4836 cgtcgccaccgccggcgtctccgctgct 4863
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>dbj|AP005592.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
              clone:P0638A12
          Length = 140731

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 80     cgtctccactgccggcgtctccgctgct 107
              |||| |||| ||||||||||||||||||
Sbjct: 105332 cgtcgccaccgccggcgtctccgctgct 105359



 Score = 40.1 bits (20), Expect = 2.1
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 80    cgtctccactgccggcgtctccgctgct 107
             |||| |||| ||||||||||||||||||
Sbjct: 95341 cgtcgccaccgccggcgtctccgctgct 95368
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>dbj|AP004163.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1323_A06
          Length = 95665

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 123   gccgctcctgctcgccatggcgcg 146
             |||||| |||||||||||||||||
Sbjct: 73130 gccgctgctgctcgccatggcgcg 73153
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>gb|AC003991.1|AC003991 Human BAC clone CTB-167B5 from 7q21, complete sequence
          Length = 118313

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 109   gtgctgctgatggtgccgct 128
             ||||||||||||||||||||
Sbjct: 94972 gtgctgctgatggtgccgct 94991
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>dbj|AK061056.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-205-H06, full
           insert sequence
          Length = 1327

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 123 gccgctcctgctcgccatggcgcg 146
           |||||| |||||||||||||||||
Sbjct: 95  gccgctgctgctcgccatggcgcg 72
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>gb|DQ065771.1| Polyangium cellulosum hypothetical protein gene, complete cds;
             chivosazol biosynthetic gene cluster, complete sequence;
             and hypothetical protein gene, complete cds
          Length = 96547

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 88    ctgccggcgtctccgctgct 107
             ||||||||||||||||||||
Sbjct: 21719 ctgccggcgtctccgctgct 21738
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>ref|NM_183994.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2820

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 68  cgccctcctcgtcgtctcc 86
           |||||||||||||||||||
Sbjct: 308 cgccctcctcgtcgtctcc 326
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>ref|NM_190029.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 426

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 73 tcctcgtcgtctccactgc 91
          |||||||||||||||||||
Sbjct: 44 tcctcgtcgtctccactgc 62
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>gb|AE014291.4| Brucella suis 1330 chromosome I, complete sequence
          Length = 2107794

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 114    gctgatggtgccgctcctg 132
              |||||||||||||||||||
Sbjct: 598601 gctgatggtgccgctcctg 598619
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>gb|AC121297.20| Mus musculus chromosome 1, clone RP23-326H11, complete sequence
          Length = 207496

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 1      atgcatgcaaacaaatcac 19
              |||||||||||||||||||
Sbjct: 131939 atgcatgcaaacaaatcac 131921
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>gb|CP000352.1| Ralstonia metallidurans CH34, complete genome
          Length = 3928089

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 108     cgtgctgctgatggtgccg 126
               |||||||||||||||||||
Sbjct: 1134909 cgtgctgctgatggtgccg 1134927
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>gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete sequence
          Length = 3806533

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 106     ctcgtgctgctgatggtgc 124
               |||||||||||||||||||
Sbjct: 3130056 ctcgtgctgctgatggtgc 3130038



 Score = 38.2 bits (19), Expect = 8.3
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                      
Query: 101     cgctgctcgtgctgctgatggtg 123
               ||||||||||| |||||||||||
Sbjct: 1027392 cgctgctcgtggtgctgatggtg 1027370
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>emb|CR628337.1| Legionella pneumophila str. Lens complete genome
          Length = 3345687

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 110     tgctgctgatggtgccgct 128
               |||||||||||||||||||
Sbjct: 2750943 tgctgctgatggtgccgct 2750925
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>emb|CR628336.1| Legionella pneumophila str. Paris complete genome
          Length = 3503610

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 110     tgctgctgatggtgccgct 128
               |||||||||||||||||||
Sbjct: 2917169 tgctgctgatggtgccgct 2917151
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>gb|AC151265.3| Mus musculus BAC clone RP24-372H7 from chromosome 17, complete sequence
          Length = 191739

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 1     atgcatgcaaacaaatcac 19
             |||||||||||||||||||
Sbjct: 11895 atgcatgcaaacaaatcac 11877
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>emb|AJ308113.1|LFL308113 Lampetra fluviatilis mRNA for type II keratin 3
          Length = 3001

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 99   tccgctgctcgtgctgctg 117
            |||||||||||||||||||
Sbjct: 2865 tccgctgctcgtgctgctg 2847
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>gb|AE012407.1| Xanthomonas campestris pv. campestris str. ATCC 33913,  section 315
            of 460 of the complete genome
          Length = 12052

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 52   gcgcggcacgcaatggcgc 70
            |||||||||||||||||||
Sbjct: 5408 gcgcggcacgcaatggcgc 5390
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>gb|AF435056.1| Plasmodium vivax isolate SKOR-79 merozoite surface protein 1
           (MSP-1) gene, partial cds
          Length = 777

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 28/31 (90%)
 Strand = Plus / Minus

                                          
Query: 104 tgctcgtgctgctgatggtgccgctcctgct 134
           ||||| || |||||||||||| |||||||||
Sbjct: 414 tgctcctggtgctgatggtgctgctcctgct 384
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>gb|AF435054.1| Plasmodium vivax isolate SKOR-67 merozoite surface protein 1
           (MSP-1) gene, partial cds
          Length = 777

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 28/31 (90%)
 Strand = Plus / Minus

                                          
Query: 104 tgctcgtgctgctgatggtgccgctcctgct 134
           ||||| || |||||||||||| |||||||||
Sbjct: 414 tgctcctggtgctgatggtgctgctcctgct 384
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>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome
          Length = 4967148

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 108    cgtgctgctgatggtgccg 126
              |||||||||||||||||||
Sbjct: 866941 cgtgctgctgatggtgccg 866923
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>gb|AC009690.17| Homo sapiens chromosome 15, clone RP11-106M3, complete sequence
          Length = 184640

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 125    cgctcctgctcgccatggc 143
              |||||||||||||||||||
Sbjct: 104228 cgctcctgctcgccatggc 104246
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>gb|AC021486.10| Homo sapiens chromosome , clone RP11-73I6, complete sequence
          Length = 144356

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 5     atgcaaacaaatcactagc 23
             |||||||||||||||||||
Sbjct: 25987 atgcaaacaaatcactagc 26005
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>gb|AC175205.2| Sporobolomyces roseus clone JGIBAIF-5L1, complete sequence
          Length = 36144

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 71    cctcctcgtcgtctccact 89
             |||||||||||||||||||
Sbjct: 33567 cctcctcgtcgtctccact 33549
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>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome
          Length = 5148708

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 52      gcgcggcacgcaatggcgc 70
               |||||||||||||||||||
Sbjct: 1428926 gcgcggcacgcaatggcgc 1428944
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                   
Query: 73       tcctcgtcgtctccactgc 91
                |||||||||||||||||||
Sbjct: 40891823 tcctcgtcgtctccactgc 40891841



 Score = 38.2 bits (19), Expect = 8.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                   
Query: 73       tcctcgtcgtctccactgc 91
                |||||||||||||||||||
Sbjct: 24927023 tcctcgtcgtctccactgc 24927005



 Score = 38.2 bits (19), Expect = 8.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                   
Query: 73       tcctcgtcgtctccactgc 91
                |||||||||||||||||||
Sbjct: 21382762 tcctcgtcgtctccactgc 21382780



 Score = 38.2 bits (19), Expect = 8.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                   
Query: 68       cgccctcctcgtcgtctcc 86
                |||||||||||||||||||
Sbjct: 13777952 cgccctcctcgtcgtctcc 13777970
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>gb|AE009571.1| Brucella melitensis 16M chromosome I, section 128 of 195 of the
             complete sequence
          Length = 13507

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 114   gctgatggtgccgctcctg 132
             |||||||||||||||||||
Sbjct: 10587 gctgatggtgccgctcctg 10569
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>dbj|AP003272.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0506E04
          Length = 139934

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 73     tcctcgtcgtctccactgc 91
              |||||||||||||||||||
Sbjct: 103929 tcctcgtcgtctccactgc 103947
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>dbj|AP003267.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0496H05
          Length = 147817

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 73     tcctcgtcgtctccactgc 91
              |||||||||||||||||||
Sbjct: 104700 tcctcgtcgtctccactgc 104718
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>dbj|AP003246.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0423A12
          Length = 178649

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 73    tcctcgtcgtctccactgc 91
             |||||||||||||||||||
Sbjct: 20248 tcctcgtcgtctccactgc 20266
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>dbj|AP003205.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:B1146B04
          Length = 145186

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 68     cgccctcctcgtcgtctcc 86
              |||||||||||||||||||
Sbjct: 116280 cgccctcctcgtcgtctcc 116298
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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                      
Query: 101     cgctgctcgtgctgctgatggtg 123
               |||||||||| ||||||||||||
Sbjct: 6411369 cgctgctcgtcctgctgatggtg 6411347



 Score = 38.2 bits (19), Expect = 8.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 110     tgctgctgatggtgccgct 128
               |||||||||||||||||||
Sbjct: 3766752 tgctgctgatggtgccgct 3766734



 Score = 38.2 bits (19), Expect = 8.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 145     cgtccgtgctccggcgtgg 163
               |||||||||||||||||||
Sbjct: 1367950 cgtccgtgctccggcgtgg 1367968
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>gb|AF435638.1| Plasmodium vivax isolate SK4 merozoite surface protein 1 (MSP1) gene,
            complete cds
          Length = 5303

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 28/31 (90%)
 Strand = Plus / Minus

                                           
Query: 104  tgctcgtgctgctgatggtgccgctcctgct 134
            ||||| || |||||||||||| |||||||||
Sbjct: 3946 tgctcctggtgctgatggtgctgctcctgct 3916
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>gb|AF435636.1| Plasmodium vivax isolate SK2 merozoite surface protein 1 (MSP1) gene,
            complete cds
          Length = 5303

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 28/31 (90%)
 Strand = Plus / Minus

                                           
Query: 104  tgctcgtgctgctgatggtgccgctcctgct 134
            ||||| || |||||||||||| |||||||||
Sbjct: 3946 tgctcctggtgctgatggtgctgctcctgct 3916
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>gb|AF435635.1| Plasmodium vivax isolate SK1 merozoite surface protein 1 (MSP1) gene,
            complete cds
          Length = 5303

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 28/31 (90%)
 Strand = Plus / Minus

                                           
Query: 104  tgctcgtgctgctgatggtgccgctcctgct 134
            ||||| || |||||||||||| |||||||||
Sbjct: 3946 tgctcctggtgctgatggtgctgctcctgct 3916
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>gb|AF435622.1| Plasmodium vivax isolate BP1 merozoite surface protein 1 (MSP1) gene,
            complete cds
          Length = 5399

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 28/31 (90%)
 Strand = Plus / Minus

                                           
Query: 104  tgctcgtgctgctgatggtgccgctcctgct 134
            ||||| || |||||||||||| |||||||||
Sbjct: 4042 tgctcctggtgctgatggtgctgctcctgct 4012
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>gb|AF435620.1| Plasmodium vivax isolate BD9 merozoite surface protein 1 (MSP1) gene,
            complete cds
          Length = 5363

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 28/31 (90%)
 Strand = Plus / Minus

                                           
Query: 104  tgctcgtgctgctgatggtgccgctcctgct 134
            ||||| || |||||||||||| |||||||||
Sbjct: 4006 tgctcctggtgctgatggtgctgctcctgct 3976
to top
>gb|AF435619.1| Plasmodium vivax isolate BD6 merozoite surface protein 1 (MSP1) gene,
            complete cds
          Length = 5303

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 28/31 (90%)
 Strand = Plus / Minus

                                           
Query: 104  tgctcgtgctgctgatggtgccgctcctgct 134
            ||||| || |||||||||||| |||||||||
Sbjct: 3946 tgctcctggtgctgatggtgctgctcctgct 3916
to top
>gb|AF435617.1| Plasmodium vivax isolate BD2 merozoite surface protein 1 (MSP1) gene,
            complete cds
          Length = 5363

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 28/31 (90%)
 Strand = Plus / Minus

                                           
Query: 104  tgctcgtgctgctgatggtgccgctcctgct 134
            ||||| || |||||||||||| |||||||||
Sbjct: 4006 tgctcctggtgctgatggtgctgctcctgct 3976
to top
>gb|AF435616.1| Plasmodium vivax isolate BD1 merozoite surface protein 1 (MSP1) gene,
            complete cds
          Length = 5363

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 28/31 (90%)
 Strand = Plus / Minus

                                           
Query: 104  tgctcgtgctgctgatggtgccgctcctgct 134
            ||||| || |||||||||||| |||||||||
Sbjct: 4006 tgctcctggtgctgatggtgctgctcctgct 3976
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>gb|AF435611.1| Plasmodium vivax isolate TG46 merozoite surface protein 1 (MSP1)
            gene, complete cds
          Length = 5327

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 28/31 (90%)
 Strand = Plus / Minus

                                           
Query: 104  tgctcgtgctgctgatggtgccgctcctgct 134
            ||||| || |||||||||||| |||||||||
Sbjct: 3970 tgctcctggtgctgatggtgctgctcctgct 3940
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>gb|AF435608.1| Plasmodium vivax isolate TFF18 merozoite surface protein 1 (MSP1)
            gene, complete cds
          Length = 5387

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 28/31 (90%)
 Strand = Plus / Minus

                                           
Query: 104  tgctcgtgctgctgatggtgccgctcctgct 134
            ||||| || |||||||||||| |||||||||
Sbjct: 4030 tgctcctggtgctgatggtgctgctcctgct 4000
to top
>gb|AF435597.1| Plasmodium vivax isolate T107 merozoite surface protein 1 (MSP1)
            gene, complete cds
          Length = 5318

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 28/31 (90%)
 Strand = Plus / Minus

                                           
Query: 104  tgctcgtgctgctgatggtgccgctcctgct 134
            ||||| || |||||||||||| |||||||||
Sbjct: 3961 tgctcctggtgctgatggtgctgctcctgct 3931
to top
>dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome
          Length = 4659019

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 110     tgctgctgatggtgccgct 128
               |||||||||||||||||||
Sbjct: 2677066 tgctgctgatggtgccgct 2677048
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>gb|AE017223.1| Brucella abortus biovar 1 str. 9-941 chromosome I, complete sequence
          Length = 2124241

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 114    gctgatggtgccgctcctg 132
              |||||||||||||||||||
Sbjct: 620098 gctgatggtgccgctcctg 620116
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>dbj|AP002536.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0015I14
          Length = 150650

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 98    ctccgctgctcgtgctgctgatg 120
             ||||||||||| |||||||||||
Sbjct: 59912 ctccgctgctcctgctgctgatg 59890
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>dbj|AP002819.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0501G01
          Length = 154561

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 73     tcctcgtcgtctccactgc 91
              |||||||||||||||||||
Sbjct: 150143 tcctcgtcgtctccactgc 150125
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>dbj|AP003852.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0440D10
          Length = 144340

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 68    cgccctcctcgtcgtctcc 86
             |||||||||||||||||||
Sbjct: 15355 cgccctcctcgtcgtctcc 15373
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>dbj|AP003075.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0468H06
          Length = 155031

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 73    tcctcgtcgtctccactgc 91
             |||||||||||||||||||
Sbjct: 24148 tcctcgtcgtctccactgc 24166
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>dbj|AK131098.1| Homo sapiens mRNA for FLJ00324 protein
          Length = 4440

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 125 cgctcctgctcgccatggc 143
           |||||||||||||||||||
Sbjct: 872 cgctcctgctcgccatggc 854
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>dbj|AK069585.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023022M24, full
           insert sequence
          Length = 3249

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 68  cgccctcctcgtcgtctcc 86
           |||||||||||||||||||
Sbjct: 113 cgccctcctcgtcgtctcc 131
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>emb|CR925754.15| Zebrafish DNA sequence from clone CH211-148J16 in linkage group 6,
              complete sequence
          Length = 150312

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 101    cgctgctcgtgctgctgatggtg 123
              ||||||||||||||||| |||||
Sbjct: 105835 cgctgctcgtgctgctgctggtg 105857
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>emb|CT010473.14| Mouse DNA sequence from clone RP23-238D5 on chromosome 17, complete
             sequence
          Length = 173998

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 1     atgcatgcaaacaaatcac 19
             |||||||||||||||||||
Sbjct: 88376 atgcatgcaaacaaatcac 88358
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>gb|AC153487.1| Taeniopygia guttata clone TG__Ba0319A15, complete sequence
          Length = 136080

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 102    gctgctcgtgctgctgatg 120
              |||||||||||||||||||
Sbjct: 133154 gctgctcgtgctgctgatg 133172
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>emb|AM040264.1| Brucella melitensis biovar Abortus chromosome I, complete sequence,
              strain 2308
          Length = 2121359

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 114    gctgatggtgccgctcctg 132
              |||||||||||||||||||
Sbjct: 616395 gctgatggtgccgctcctg 616413
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>dbj|AB209434.1| Homo sapiens mRNA for BRUNO-like 6 RNA-binding protein variant
            protein
          Length = 4374

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 125  cgctcctgctcgccatggc 143
            |||||||||||||||||||
Sbjct: 1003 cgctcctgctcgccatggc 985


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,066,929
Number of Sequences: 3902068
Number of extensions: 1066929
Number of successful extensions: 90315
Number of sequences better than 10.0: 75
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 88702
Number of HSP's gapped (non-prelim): 1613
length of query: 170
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 148
effective length of database: 17,147,199,772
effective search space: 2537785566256
effective search space used: 2537785566256
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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