>CB22_ORYSA (P12331) Chlorophyll a-b binding protein 2, chloroplast precursor|
           (LHCII type I CAB-2) (LHCP)
          Length = 261

 Score = 40.0 bits (92), Expect = 0.002
 Identities = 21/31 (67%), Positives = 23/31 (74%)
 Frame = +1

Query: 334 MAATTMALSSPAMKLAGASYVLGGGRITMRK 426
           MAA TMALSSPA+    A+ V G GRITMRK
Sbjct: 1   MAAATMALSSPALAGKAAAKVFGEGRITMRK 31

>CB22_ARATH (P04778) Chlorophyll a-b binding protein 2, chloroplast precursor|
           (LHCII type I CAB-2) (CAB-140) (LHCP)
          Length = 267

 Score = 38.5 bits (88), Expect = 0.007
 Identities = 24/37 (64%), Positives = 28/37 (75%), Gaps = 6/37 (16%)
 Frame = +1

Query: 334 MAATTMALSSPA-----MKLA-GASYVLGGGRITMRK 426
           MAA+TMALSSPA     +KL+  AS VLG GR+TMRK
Sbjct: 1   MAASTMALSSPAFAGKAVKLSPAASEVLGSGRVTMRK 37

>CB21_SINAL (P13851) Chlorophyll a-b binding protein 1, chloroplast precursor|
           (LHCII type I CAB-1) (LHCP)
          Length = 266

 Score = 38.5 bits (88), Expect = 0.007
 Identities = 24/37 (64%), Positives = 28/37 (75%), Gaps = 6/37 (16%)
 Frame = +1

Query: 334 MAATTMALSSPA-----MKLA-GASYVLGGGRITMRK 426
           MAA+TMALSSPA     +KL+ GAS V G GR+TMRK
Sbjct: 1   MAASTMALSSPAFAGKAVKLSPGASEVFGTGRVTMRK 37

>CB21_ARATH (P04777) Chlorophyll a-b binding protein 165/180, chloroplast|
           precursor (LHCII type I CAB-165/180)
          Length = 267

 Score = 37.0 bits (84), Expect = 0.019
 Identities = 22/37 (59%), Positives = 24/37 (64%), Gaps = 6/37 (16%)
 Frame = +1

Query: 334 MAATTMALSSPAMK------LAGASYVLGGGRITMRK 426
           MAA+TMALSSPA           AS VLG GR+TMRK
Sbjct: 1   MAASTMALSSPAFAGKAVNLSPAASEVLGSGRVTMRK 37

>CB2C_LYCES (P14275) Chlorophyll a-b binding protein 1C, chloroplast precursor|
           (LHCII type I CAB-1C) (LHCP) (Fragments)
          Length = 265

 Score = 35.8 bits (81), Expect = 0.043
 Identities = 23/37 (62%), Positives = 26/37 (70%), Gaps = 6/37 (16%)
 Frame = +1

Query: 334 MAATTMALSSP-----AMKLA-GASYVLGGGRITMRK 426
           MAA TMALSSP     A+KL+  AS + G GRITMRK
Sbjct: 1   MAAATMALSSPSFAGQAVKLSPSASEISGNGRITMRK 37

>CB2B_LYCES (P07370) Chlorophyll a-b binding protein 1B, chloroplast precursor|
           (LHCII type I CAB-1B) (LHCP)
          Length = 265

 Score = 35.8 bits (81), Expect = 0.043
 Identities = 23/37 (62%), Positives = 26/37 (70%), Gaps = 6/37 (16%)
 Frame = +1

Query: 334 MAATTMALSSP-----AMKLA-GASYVLGGGRITMRK 426
           MAA TMALSSP     A+KL+  AS + G GRITMRK
Sbjct: 1   MAAATMALSSPSFAGQAVKLSPSASEISGNGRITMRK 37

>CB2A_SPIOL (P12333) Chlorophyll a-b binding protein, chloroplast precursor|
           (LHCII type I CAB) (LHCP)
          Length = 267

 Score = 34.7 bits (78), Expect = 0.096
 Identities = 22/37 (59%), Positives = 27/37 (72%), Gaps = 6/37 (16%)
 Frame = +1

Query: 334 MAATTMALSSP-----AMKLAG-ASYVLGGGRITMRK 426
           MA++TMALSSP     A+KL   AS ++G GRITMRK
Sbjct: 1   MASSTMALSSPSLAGKAVKLGPTASEIIGEGRITMRK 37

>CB22_SOYBN (P09755) Chlorophyll a-b binding protein 2, chloroplast precursor|
           (LHCII type I CAB-2) (LHCP)
          Length = 256

 Score = 34.3 bits (77), Expect = 0.13
 Identities = 21/36 (58%), Positives = 26/36 (72%), Gaps = 5/36 (13%)
 Frame = +1

Query: 334 MAATTMALSSP-----AMKLAGASYVLGGGRITMRK 426
           MAA+TMALSS      AMKLA ++  LG GR++MRK
Sbjct: 1   MAASTMALSSSSLAGQAMKLAPSTPELGVGRVSMRK 36

>CB24_TOBAC (P27495) Chlorophyll a-b binding protein 40, chloroplast precursor|
           (LHCII type I CAB-40) (LHCP)
          Length = 267

 Score = 33.9 bits (76), Expect = 0.16
 Identities = 20/37 (54%), Positives = 27/37 (72%), Gaps = 6/37 (16%)
 Frame = +1

Query: 334 MAATTMALSSP-----AMKLA-GASYVLGGGRITMRK 426
           MAA+TMALSSP     A+KL+  +S + G G++TMRK
Sbjct: 1   MAASTMALSSPSFAGKAVKLSPSSSEITGNGKVTMRK 37

>CB23_APIGR (P92919) Chlorophyll a-b binding protein, chloroplast precursor|
           (Allergen Api g 3)
          Length = 264

 Score = 33.5 bits (75), Expect = 0.21
 Identities = 20/37 (54%), Positives = 27/37 (72%), Gaps = 6/37 (16%)
 Frame = +1

Query: 334 MAATTMALSSPAM-----KLA-GASYVLGGGRITMRK 426
           MAA+TMALSSPA+     K+A  +S + G GR++MRK
Sbjct: 1   MAASTMALSSPALAGKAVKVAPSSSELFGNGRVSMRK 37

>CB21_ORYSA (P12330) Chlorophyll a-b binding protein 1, chloroplast precursor|
           (LHCII type I CAB-1) (LHCP)
          Length = 265

 Score = 33.5 bits (75), Expect = 0.21
 Identities = 20/34 (58%), Positives = 22/34 (64%), Gaps = 3/34 (8%)
 Frame = +1

Query: 334 MAATTMALSSPAMKLAG---ASYVLGGGRITMRK 426
           MAA TMALSSP M  A    +S + G  RITMRK
Sbjct: 1   MAAATMALSSPVMARAAPSTSSALFGEARITMRK 34

>CB25_NICPL (P12470) Chlorophyll a-b binding protein E, chloroplast precursor|
           (LHCII type I CAB-E) (LHCP)
          Length = 266

 Score = 32.3 bits (72), Expect = 0.48
 Identities = 20/36 (55%), Positives = 26/36 (72%), Gaps = 5/36 (13%)
 Frame = +1

Query: 334 MAATTMALSSP----AMKLA-GASYVLGGGRITMRK 426
           MAA+T ALSSP    A+KL+  +S V G G++TMRK
Sbjct: 1   MAASTTALSSPFAGKAVKLSPSSSEVTGNGKVTMRK 36

>CB23_PETSP (P04781) Chlorophyll a-b binding protein 22R, chloroplast precursor|
           (LHCII type I CAB-22R) (LHCP)
          Length = 267

 Score = 32.3 bits (72), Expect = 0.48
 Identities = 20/37 (54%), Positives = 26/37 (70%), Gaps = 6/37 (16%)
 Frame = +1

Query: 334 MAATTMALSS-----PAMKL-AGASYVLGGGRITMRK 426
           MAATTMALSS      A+KL + +S + G G++TMRK
Sbjct: 1   MAATTMALSSSSFAGKAVKLSSSSSEITGNGKVTMRK 37

>CB21_TOBAC (P27492) Chlorophyll a-b binding protein 16, chloroplast precursor|
           (LHCII type I CAB-16) (LHCP)
          Length = 266

 Score = 32.3 bits (72), Expect = 0.48
 Identities = 20/36 (55%), Positives = 26/36 (72%), Gaps = 5/36 (13%)
 Frame = +1

Query: 334 MAATTMALSSP----AMKLA-GASYVLGGGRITMRK 426
           MAA+T ALSSP    A+KL+  +S V G G++TMRK
Sbjct: 1   MAASTTALSSPFAGKAVKLSPSSSEVTGNGKVTMRK 36

>ORK1_DROME (Q94526) Open rectifier potassium channel protein 1 (Two pore|
           domain potassium channel Ork1)
          Length = 1001

 Score = 32.3 bits (72), Expect = 0.48
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +2

Query: 113 RTPPAPYEKSKSLGSGGSMVARLKLKGIDGRAPP 214
           R PP P+E + SL SGG  +  +  +  DG  PP
Sbjct: 599 RGPPPPFESNGSLASGGGGLTNMGFQMEDGATPP 632

>CB22_TOBAC (P27493) Chlorophyll a-b binding protein 21, chloroplast precursor|
           (LHCII type I CAB-21) (LHCP)
          Length = 265

 Score = 32.3 bits (72), Expect = 0.48
 Identities = 20/37 (54%), Positives = 25/37 (67%), Gaps = 6/37 (16%)
 Frame = +1

Query: 334 MAATTMALSSP-----AMKLA-GASYVLGGGRITMRK 426
           MAA TMALSSP     A+KL+  A  + G GR++MRK
Sbjct: 1   MAAATMALSSPSFAGQAVKLSPSAPEITGNGRVSMRK 37

>CB2F_LYCES (P14277) Chlorophyll a-b binding protein 3B, chloroplast precursor|
           (LHCII type I CAB-3B) (LHCP) (Fragments)
          Length = 267

 Score = 32.0 bits (71), Expect = 0.62
 Identities = 21/37 (56%), Positives = 26/37 (70%), Gaps = 6/37 (16%)
 Frame = +1

Query: 334 MAATTMALSSP-----AMKLA-GASYVLGGGRITMRK 426
           MAA+TMALSS      A+KL+  +S + G GRITMRK
Sbjct: 1   MAASTMALSSSTFAGKAVKLSPSSSEISGNGRITMRK 37

>CB2E_LYCES (P14276) Chlorophyll a-b binding protein 3A, chloroplast precursor|
           (LHCII type I CAB-3A) (LHCP) (Fragments)
          Length = 267

 Score = 32.0 bits (71), Expect = 0.62
 Identities = 21/37 (56%), Positives = 25/37 (67%), Gaps = 6/37 (16%)
 Frame = +1

Query: 334 MAATTMALSSPA-----MKLA-GASYVLGGGRITMRK 426
           MAA+TMALSS       +KLA  +S + G GRITMRK
Sbjct: 1   MAASTMALSSSTFAGKTVKLAPSSSEITGNGRITMRK 37

>APE1_AERPE (O73942) Homing endonuclease I-ApeI (EC 3.1.-.-) (rRNA|
           intron-encoded homing endonuclease 1)
          Length = 222

 Score = 32.0 bits (71), Expect = 0.62
 Identities = 19/34 (55%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
 Frame = +2

Query: 137 KSKSLGS--GGSMVARLKLKGIDGRAPPGVEPAA 232
           KSK L    G  +    KLKGI G AP GVEPAA
Sbjct: 189 KSKKLNELLGRPLPGPSKLKGIGGGAPQGVEPAA 222

>CB48_MAIZE (Q00827) Chlorophyll a-b binding protein 48, chloroplast precursor|
           (LHCII type I CAB-48) (LHCP)
          Length = 264

 Score = 32.0 bits (71), Expect = 0.62
 Identities = 19/34 (55%), Positives = 22/34 (64%), Gaps = 3/34 (8%)
 Frame = +1

Query: 334 MAATTMALSSPAM---KLAGASYVLGGGRITMRK 426
           MAA TMA++S A+     AG   V G GRITMRK
Sbjct: 1   MAAATMAITSRALVGKPAAGTRDVFGEGRITMRK 34

>CB2A_LYCES (P14274) Chlorophyll a-b binding protein 1A, chloroplast precursor|
           (LHCII type I CAB-1A) (LHCP) (Fragments)
          Length = 265

 Score = 31.6 bits (70), Expect = 0.81
 Identities = 22/37 (59%), Positives = 24/37 (64%), Gaps = 6/37 (16%)
 Frame = +1

Query: 334 MAATTMALSSP-----AMKLA-GASYVLGGGRITMRK 426
           MAA  MALSSP     A+KL+  AS   G GRITMRK
Sbjct: 1   MAAAAMALSSPSFAGQAVKLSPSASENSGNGRITMRK 37

>CB23_NICPL (P12469) Chlorophyll a-b binding protein C, chloroplast precursor|
           (LHCII type I CAB-C) (LHCP)
          Length = 267

 Score = 30.8 bits (68), Expect = 1.4
 Identities = 19/37 (51%), Positives = 26/37 (70%), Gaps = 6/37 (16%)
 Frame = +1

Query: 334 MAATTMALSSP-----AMKLA-GASYVLGGGRITMRK 426
           MAA+TMALSS      A+KL+  +S + G G++TMRK
Sbjct: 1   MAASTMALSSSSFAGKAVKLSPSSSEITGNGKVTMRK 37

>CB21_MAIZE (P12329) Chlorophyll a-b binding protein 1, chloroplast precursor|
           (LHCII type I CAB-1) (LHCP)
          Length = 262

 Score = 30.4 bits (67), Expect = 1.8
 Identities = 20/34 (58%), Positives = 23/34 (67%), Gaps = 3/34 (8%)
 Frame = +1

Query: 334 MAATTMALSSPAMKLAGASYVLGG---GRITMRK 426
           MAA+TMA+SS AM  AG    +G    GRITMRK
Sbjct: 1   MAASTMAISSTAM--AGTPIKVGSFGEGRITMRK 32

>CB2G_LYCES (P07369) Chlorophyll a-b binding protein 3C, chloroplast precursor|
           (LHCII type I CAB-3C) (LHCP)
          Length = 267

 Score = 30.4 bits (67), Expect = 1.8
 Identities = 19/37 (51%), Positives = 25/37 (67%), Gaps = 6/37 (16%)
 Frame = +1

Query: 334 MAATTMALSSP-----AMKLA-GASYVLGGGRITMRK 426
           MA +TMALSS      A+KL+  +S + G GR+TMRK
Sbjct: 1   MATSTMALSSSTFAGKAVKLSPSSSEITGNGRVTMRK 37

>CB25_TOBAC (P27496) Chlorophyll a-b binding protein 50, chloroplast precursor|
           (LHCII type I CAB-50) (LHCP)
          Length = 267

 Score = 30.4 bits (67), Expect = 1.8
 Identities = 19/37 (51%), Positives = 25/37 (67%), Gaps = 6/37 (16%)
 Frame = +1

Query: 334 MAATTMALSSP-----AMKLA-GASYVLGGGRITMRK 426
           MAA TMALSS      A+KL+  +S + G G++TMRK
Sbjct: 1   MAAATMALSSSSFAGKAVKLSPSSSEITGNGKVTMRK 37

>CB25_PETSP (P04783) Chlorophyll a-b binding protein 91R, chloroplast precursor|
           (LHCII type I CAB-91R) (LHCP)
          Length = 267

 Score = 30.4 bits (67), Expect = 1.8
 Identities = 19/37 (51%), Positives = 24/37 (64%), Gaps = 6/37 (16%)
 Frame = +1

Query: 334 MAATTMALSSP-----AMKLA-GASYVLGGGRITMRK 426
           MAA TMALSSP     A+K +  +S + G G+ TMRK
Sbjct: 1   MAAATMALSSPSFAGKAVKFSPSSSEITGNGKATMRK 37

>AKT6_ARATH (Q8GXE6) Potassium channel AKT6 (Shaker pollen inward rectifier|
           K(+) channel) (Potassium channel SPIK)
          Length = 888

 Score = 30.0 bits (66), Expect = 2.4
 Identities = 20/55 (36%), Positives = 27/55 (49%)
 Frame = +2

Query: 8   VFINQERKLGARRRSDTVLVSTINDADQGSADVAYRTPPAPYEKSKSLGSGGSMV 172
           V ++Q+RKL   R S   ++S  N AD G      R+P  P       G GGSM+
Sbjct: 773 VVVSQKRKLNNFRNSLFGIISAANSADDGGE--VPRSPAVP-------GGGGSMI 818

>CB28_PEA (P27490) Chlorophyll a-b binding protein 8, chloroplast precursor|
           (LHCII type I CAB-8)
          Length = 268

 Score = 29.6 bits (65), Expect = 3.1
 Identities = 18/38 (47%), Positives = 22/38 (57%), Gaps = 7/38 (18%)
 Frame = +1

Query: 334 MAATTMALSSPAM-------KLAGASYVLGGGRITMRK 426
           MAA++MALSSP +           +S  LGG R TMRK
Sbjct: 1   MAASSMALSSPTLTGKPVETSANPSSQELGGARFTMRK 38

>CB24_PETSP (P04782) Chlorophyll a-b binding protein 25, chloroplast precursor|
           (LHCII type I CAB-25) (LHCP)
          Length = 266

 Score = 29.3 bits (64), Expect = 4.0
 Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 5/36 (13%)
 Frame = +1

Query: 334 MAATTMALSSP-----AMKLAGASYVLGGGRITMRK 426
           MAA TMA+SS      A+ +  +S + G G+ TMRK
Sbjct: 1   MAAATMAISSSSFAGKAVNVPSSSQITGNGKATMRK 36

>SLBP2_XENLA (Q9YGP6) Oocyte-specific histone RNA stem-loop-binding protein 2|
          Length = 250

 Score = 28.9 bits (63), Expect = 5.3
 Identities = 19/34 (55%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = -1

Query: 241 VKLSRR-LHAWWCPSVNSFKFQPCDHTPPGTQRL 143
           +KL RR LHAW  PS NSF+    DH+   TQRL
Sbjct: 160 IKLWRRDLHAWDPPSQNSFQE---DHSFKQTQRL 190

>TEGU_SHV21 (Q01056) Probable large tegument protein|
          Length = 2469

 Score = 28.5 bits (62), Expect = 6.9
 Identities = 17/54 (31%), Positives = 23/54 (42%)
 Frame = -3

Query: 251 PVLGQIKPQAPRLVVPFRQFL*VSALRPYSPRNPKTLISHKVPAESYKQHPPIP 90
           P   Q  P+ PR   P       +   P +PR PKT     +P +  K+ P IP
Sbjct: 253 PTSTQKPPKTPRTPKP------ATPKAPKTPRKPKTPKESTIPYDKSKKPPKIP 300

>CB27_TOBAC (P27491) Chlorophyll a-b binding protein 7, chloroplast precursor|
           (LHCII type I CAB-7) (LHCP)
          Length = 267

 Score = 28.5 bits (62), Expect = 6.9
 Identities = 18/37 (48%), Positives = 24/37 (64%), Gaps = 6/37 (16%)
 Frame = +1

Query: 334 MAATTMALSSP-----AMKLA-GASYVLGGGRITMRK 426
           M A+TMALSSP     A+KL+  +S + G G+  MRK
Sbjct: 1   MTASTMALSSPSFAGNAVKLSPSSSEITGNGKAIMRK 37

>CB21_WHEAT (P04784) Chlorophyll a-b binding protein, chloroplast precursor|
           (LHCII type I CAB) (LHCP)
          Length = 266

 Score = 28.5 bits (62), Expect = 6.9
 Identities = 17/36 (47%), Positives = 23/36 (63%), Gaps = 5/36 (13%)
 Frame = +1

Query: 334 MAATTMALSS-----PAMKLAGASYVLGGGRITMRK 426
           MAATTM+LSS      A+K   +S ++G  R+ MRK
Sbjct: 1   MAATTMSLSSSSFAGKAVKNLPSSALIGDARVNMRK 36

>BIN1_HUMAN (O00499) Myc box-dependent-interacting protein 1 (Bridging|
           integrator 1) (Amphiphysin-like protein) (Amphiphysin
           II) (Box-dependent myc-interacting protein 1)
          Length = 593

 Score = 28.5 bits (62), Expect = 6.9
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = -2

Query: 231 AAGSTPGGALPSIPLSFSLATILPPEPK 148
           A G+TPG  LP  P        +PP PK
Sbjct: 319 AGGATPGATLPKSPSQLRKGPPVPPPPK 346

>RL2_CLOPE (Q8XHS6) 50S ribosomal protein L2|
          Length = 277

 Score = 28.1 bits (61), Expect = 9.0
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = -1

Query: 238 KLSRRLHAWWCPSVNSFKFQPCDHTPPG 155
           K  R+ H  W P+V      PCDH   G
Sbjct: 207 KAGRKRHMGWRPTVRGSVMNPCDHPHGG 234


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,135,793
Number of Sequences: 219361
Number of extensions: 1240883
Number of successful extensions: 3224
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 3097
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3207
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2336739400
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)