>gb|AY968589.1| Triticum aestivum ice recrystallization inhibition protein 2
           precursor, mRNA, complete cds
          Length = 1596

 Score =  317 bits (160), Expect = 2e-83
 Identities = 290/331 (87%), Gaps = 3/331 (0%)
 Strand = Plus / Plus

                                                                       
Query: 90  ccatggcgaaatgctggctgctgctgctctgcttggcgtttctcttgccagcggcgtgcg 149
           |||||||||||| ||||||||||||| |||||||||||||||||||||| |||||  |||
Sbjct: 20  ccatggcgaaatcctggctgctgctgttctgcttggcgtttctcttgccggcggcaagcg 79

                                                                       
Query: 150 cgacctgccaccccgacgacctacgcgcgctgcggggcttggcccggaacctcagaggcg 209
           |||| |||||||||||||||||||| |||||||||||||||||| ||||||| || ||||
Sbjct: 80  cgacgtgccaccccgacgacctacgtgcgctgcggggcttggcc-ggaaccttaggggcg 138

                                                                       
Query: 210 gtggtgccgtccacctccgcacggtgtggtctggcgcctcgtgctgcgattgggaaggtg 269
           |||| ||   |||||||| ||  |||||||||||||||||||||||||||||||||||||
Sbjct: 139 gtggcgcg--ccacctccacagcgtgtggtctggcgcctcgtgctgcgattgggaaggtg 196

                                                                       
Query: 270 tgggctgccatggcgccaacggccgcgtcaccgtgctgcggctccccggccatggcctcg 329
           ||||||||||||| |||| |||||||||||| |  ||||||||||  || || |||||||
Sbjct: 197 tgggctgccatggtgccagcggccgcgtcacggctctgcggctccatggtcacggcctcg 256

                                                                       
Query: 330 cagggtccatcccaggagcctctctcgcaggcctggcgcgcttggaggagctctccctca 389
           | ||| |||||||||||||||| || || |||||     | ||||||||||||| |||  
Sbjct: 257 cggggcccatcccaggagcctcccttgcgggcctcataaggttggaggagctcttccttg 316

                                          
Query: 390 gctccaactctttcgccggcacccttcccga 420
           |||||||||||||||| ||||||||||||||
Sbjct: 317 gctccaactctttcgcgggcacccttcccga 347

>gb|AY968588.1| Triticum aestivum ice recrystallization inhibition protein 1
           precursor, mRNA, complete cds
          Length = 1079

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 215/269 (79%), Gaps = 6/269 (2%)
 Strand = Plus / Plus

                                                                       
Query: 83  gctgattccatggcgaaatgctggctgctgctgctctgcttggcgtttctcttgccagcg 142
           ||||| ||||||||||||||| |||||||||| || | ||||||||| |||||||| |||
Sbjct: 80  gctgaatccatggcgaaatgcgggctgctgctcctgttcttggcgttcctcttgccggcg 139

                                                                       
Query: 143 g--cgtgc-gcgacctgccaccccgacgacctacgcgcgctgcggggcttggcccggaac 199
           |  |||||  || | ||||||||||| ||||| || ||||| |||||||| ||| | |||
Sbjct: 140 gcacgtgcaacgtcgtgccaccccgatgacctccgtgcgctacggggcttcgccggaaac 199

                                                                       
Query: 200 ctcagaggcggtggtgccgtccacctccgcacggtgtggtctggcgcctcgtgctgcgat 259
           ||||   ||||||| || | || ||||||  | |  ||||| || ||||| |||||||  
Sbjct: 200 ctca---gcggtggggctgccctcctccgtgctgcctggtccggtgcctcctgctgcgtc 256

                                                                       
Query: 260 tgggaaggtgtgggctgccatggcgccaacggccgcgtcaccgtgctgcggctccccggc 319
           |||||||| |||  |||| ||||| | | |||||| ||||| | |||||||||||| || 
Sbjct: 257 tgggaaggcgtgaactgcgatggcactagcggccgtgtcacggcgctgcggctccctggg 316

                                        
Query: 320 catggcctcgcagggtccatcccaggagc 348
           || |||||||  |||  ||||||||||||
Sbjct: 317 cacggcctcgtggggctcatcccaggagc 345

>ref|XM_422019.1| PREDICTED: Gallus gallus similar to Ste-20 related kinase SPAK
           (LOC424173), mRNA
          Length = 2544

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 332 gggtccatcccaggagcctct 352
           |||||||||||||||||||||
Sbjct: 581 gggtccatcccaggagcctct 601

>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome
          Length = 4967148

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 306     tgcggctccccggccatggcc 326
               |||||||||||||||||||||
Sbjct: 2355023 tgcggctccccggccatggcc 2355043

>gb|AY664419.1| Zea mays cultivar Mo17 locus 9009, complete sequence
          Length = 405672

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 102   gctggctgctgctgctctgct 122
             |||||||||||||||||||||
Sbjct: 97659 gctggctgctgctgctctgct 97679

>gb|AC161269.4| Mus musculus BAC clone RP23-120K16 from chromosome 15, complete sequence
          Length = 206234

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 106    gctgctgctgctctgcttgg 125
              ||||||||||||||||||||
Sbjct: 204086 gctgctgctgctctgcttgg 204067

>ref|XM_482442.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 180

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 104 tggctgctgctgctctgctt 123
           ||||||||||||||||||||
Sbjct: 108 tggctgctgctgctctgctt 89

>ref|XM_472425.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 372

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 133 cttgccagcggcgtgcgcgacctgccac 160
           |||||| ||||||||||| |||||||||
Sbjct: 87  cttgcccgcggcgtgcgcaacctgccac 60

>ref|XM_613578.2| PREDICTED: Bos taurus similar to Activated RNA polymerase II
           transcriptional coactivator p15 (Positive cofactor 4)
           (PC4) (p14), transcript variant 1 (LOC533984), mRNA
          Length = 971

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 106 gctgctgctgctctgcttgg 125
           ||||||||||||||||||||
Sbjct: 227 gctgctgctgctctgcttgg 208

>ref|XM_872977.1| PREDICTED: Bos taurus similar to Activated RNA polymerase II
           transcriptional coactivator p15 (Positive cofactor 4)
           (PC4) (p14), transcript variant 2 (LOC533984), mRNA
          Length = 884

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 106 gctgctgctgctctgcttgg 125
           ||||||||||||||||||||
Sbjct: 140 gctgctgctgctctgcttgg 121

>gb|AY584193.1| Homo sapiens clone G10 Trypanosoma cruzi infected macrophage p15
           gene disrupted by LINE-1 element and Trypanosoma cruzi
           minicircle kinetoplast sequence
          Length = 1469

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 106 gctgctgctgctctgcttgg 125
           ||||||||||||||||||||
Sbjct: 212 gctgctgctgctctgcttgg 193

>gb|BC010967.1| Mus musculus SUB1 homolog (S. cerevisia, mRNA (cDNA clone MGC:13711
           IMAGE:4018261), complete cds
          Length = 694

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 106 gctgctgctgctctgcttgg 125
           ||||||||||||||||||||
Sbjct: 230 gctgctgctgctctgcttgg 211

>gb|AC121860.4| Mus musculus BAC clone RP24-105K16 from chromosome 15, complete
             sequence
          Length = 148328

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 106   gctgctgctgctctgcttgg 125
             ||||||||||||||||||||
Sbjct: 92795 gctgctgctgctctgcttgg 92776

>ref|XR_004933.1| PREDICTED: Mus musculus similar to Activated RNA polymerase II
           transcriptional coactivator p15 precursor (SUB1 homolog)
           (Positive cofactor 4) (PC4) (p14) (Single-stranded
           DNA-binding protein p9) (LOC676541), mRNA
          Length = 645

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 106 gctgctgctgctctgcttgg 125
           ||||||||||||||||||||
Sbjct: 174 gctgctgctgctctgcttgg 155

>gb|AY188755.1| Zea mays atypical receptor-like kinase MARK (ark) mRNA, complete
           cds
          Length = 2085

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 287 aacggccgcgtcaccgtgctgcggctccccgg 318
           |||||||||||  | |||||||||||||||||
Sbjct: 223 aacggccgcgtggcggtgctgcggctccccgg 254

>gb|BC039936.1| Mus musculus mRNA similar to RNA polymerase II transcriptional
           coactivator (cDNA clone IMAGE:3995690)
          Length = 1234

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 106 gctgctgctgctctgcttgg 125
           ||||||||||||||||||||
Sbjct: 761 gctgctgctgctctgcttgg 742

>emb|AL160398.27| Human DNA sequence from clone RP11-15N12 on chromosome 6 Contains the
             5' end of the gene for the possible ortholog of R.
             norvegicus ion transporter protein (NRITP), complete
             sequence
          Length = 134995

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 103   ctggctgctgctgctctgct 122
             ||||||||||||||||||||
Sbjct: 71010 ctggctgctgctgctctgct 71029

>emb|AL606453.2|OSJN00010 Oryza sativa genomic DNA, chromosome 4, BAC clone: OJ991214_12,
             complete sequence
          Length = 116952

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 133   cttgccagcggcgtgcgcgacctgccac 160
             |||||| ||||||||||| |||||||||
Sbjct: 66952 cttgcccgcggcgtgcgcaacctgccac 66925

>dbj|AP008232.1| Sodalis glossinidius str. 'morsitans' DNA, complete genome
          Length = 4171146

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                           
Query: 281     ggcgccaacggccgcgtcaccgtgctgc 308
               |||||||||||| |||||||| ||||||
Sbjct: 3734138 ggcgccaacggctgcgtcaccttgctgc 3734111

>ref|NM_011294.2| Mus musculus SUB1 homolog (S. cerevisia (Sub1), mRNA
          Length = 3321

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 106 gctgctgctgctctgcttgg 125
           ||||||||||||||||||||
Sbjct: 232 gctgctgctgctctgcttgg 213

>dbj|AK132021.1| Mus musculus 10, 11 days embryo whole body cDNA, RIKEN full-length
           enriched library, clone:2810422N07 product:RNA
           polymerase II transcriptional coactivator, full insert
           sequence
          Length = 682

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 106 gctgctgctgctctgcttgg 125
           ||||||||||||||||||||
Sbjct: 231 gctgctgctgctctgcttgg 212

>dbj|AK146335.1| Mus musculus CRL-1722 L5178Y-R cDNA, RIKEN full-length enriched
           library, clone:I730057E04 product:RNA polymerase II
           transcriptional coactivator, full insert sequence
          Length = 517

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 106 gctgctgctgctctgcttgg 125
           ||||||||||||||||||||
Sbjct: 231 gctgctgctgctctgcttgg 212

>dbj|AK151734.1| Mus musculus bone marrow macrophage cDNA, RIKEN full-length
           enriched library, clone:I830035M10 product:RNA
           polymerase II transcriptional coactivator, full insert
           sequence
          Length = 683

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 106 gctgctgctgctctgcttgg 125
           ||||||||||||||||||||
Sbjct: 232 gctgctgctgctctgcttgg 213

>dbj|AK154114.1| Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN
           full-length enriched library, clone:F630002J16
           product:RNA polymerase II transcriptional coactivator,
           full insert sequence
          Length = 682

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 106 gctgctgctgctctgcttgg 125
           ||||||||||||||||||||
Sbjct: 231 gctgctgctgctctgcttgg 212

>dbj|AK035071.1| Mus musculus 12 days embryo embryonic body between diaphragm region
           and neck cDNA, RIKEN full-length enriched library,
           clone:9430083L08 product:unclassifiable, full insert
           sequence
          Length = 2556

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 106 gctgctgctgctctgcttgg 125
           ||||||||||||||||||||
Sbjct: 126 gctgctgctgctctgcttgg 145

>dbj|AK049260.1| Mus musculus ES cells cDNA, RIKEN full-length enriched library,
           clone:C330017N20 product:RNA polymerase II
           transcriptional coactivator, full insert sequence
          Length = 3321

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 106 gctgctgctgctctgcttgg 125
           ||||||||||||||||||||
Sbjct: 232 gctgctgctgctctgcttgg 213

>dbj|AK048371.1| Mus musculus 16 days embryo head cDNA, RIKEN full-length enriched
           library, clone:C130053F21 product:RNA polymerase II
           transcriptional coactivator, full insert sequence
          Length = 3321

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 106 gctgctgctgctctgcttgg 125
           ||||||||||||||||||||
Sbjct: 232 gctgctgctgctctgcttgg 213

>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                            
Query: 133      cttgccagcggcgtgcgcgacctgccac 160
                |||||| ||||||||||| |||||||||
Sbjct: 20556324 cttgcccgcggcgtgcgcaacctgccac 20556297

>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 104      tggctgctgctgctctgctt 123
                ||||||||||||||||||||
Sbjct: 20120348 tggctgctgctgctctgctt 20120329

>gb|AC012511.7| Homo sapiens BAC clone RP11-548P2 from 2, complete sequence
          Length = 153741

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 30     atgcatcccagaatggtttcttgt 53
              ||||||| ||||||||||||||||
Sbjct: 149832 atgcatctcagaatggtttcttgt 149809

>dbj|AP004005.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1188_F05
          Length = 117045

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 104   tggctgctgctgctctgctt 123
             ||||||||||||||||||||
Sbjct: 66894 tggctgctgctgctctgctt 66875

>gb|AC154199.2| Mus musculus BAC clone RP24-396N5 from 13, complete sequence
          Length = 120685

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 106   gctgctgctgctctgcttgg 125
             ||||||||||||||||||||
Sbjct: 67860 gctgctgctgctctgcttgg 67879

>emb|CT025645.16| Mouse DNA sequence from clone RP23-233D21 on chromosome 13, complete
             sequence
          Length = 225179

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 106   gctgctgctgctctgcttgg 125
             ||||||||||||||||||||
Sbjct: 32993 gctgctgctgctctgcttgg 32974

>emb|CT010508.10| Mouse DNA sequence from clone RP23-250G8 on chromosome 9, complete
              sequence
          Length = 223547

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 330    cagggtccatcccaggagcc 349
              ||||||||||||||||||||
Sbjct: 211315 cagggtccatcccaggagcc 211296

>gb|AC134827.4| Mus musculus BAC clone RP24-470E5 from 5, complete sequence
          Length = 193811

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 106   gctgctgctgctctgcttgg 125
             ||||||||||||||||||||
Sbjct: 79177 gctgctgctgctctgcttgg 79196

>gb|AC135118.3| Mus musculus BAC clone RP24-450N10 from 3, complete sequence
          Length = 188353

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 106    gctgctgctgctctgcttgg 125
              ||||||||||||||||||||
Sbjct: 130343 gctgctgctgctctgcttgg 130324

>emb|AL773601.11| Zebrafish DNA sequence from clone CH211-199O1, complete sequence
          Length = 201299

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 33     catcccagaatggtttcttg 52
              ||||||||||||||||||||
Sbjct: 180922 catcccagaatggtttcttg 180941

>gb|J03750.1|MUSBPP9 Mouse single stranded DNA binding protein p9 mRNA, complete cds
          Length = 2777

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 106 gctgctgctgctctgcttgg 125
           ||||||||||||||||||||
Sbjct: 216 gctgctgctgctctgcttgg 197


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,318,852
Number of Sequences: 3902068
Number of extensions: 3318852
Number of successful extensions: 73912
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 73658
Number of HSP's gapped (non-prelim): 253
length of query: 424
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 402
effective length of database: 17,147,199,772
effective search space: 6893174308344
effective search space used: 6893174308344
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)