>SNX11_MOUSE (Q91WL6) Sorting nexin-11|
          Length = 271

 Score = 33.1 bits (74), Expect = 0.28
 Identities = 18/63 (28%), Positives = 29/63 (46%)
 Frame = -2

Query: 287 RATPPLPPPFVSGRQSGLSLWYLIMSNAGTAFSLDELVDAASLPIAWTSRRPRVKIGLRP 108
           R + P PP  +S  +  L  W  +M + G +     L+ ++SLP  W   RP   + +  
Sbjct: 189 RRSSPSPP--LSEEKEQLETWAPVMDSEGPSSESPTLLPSSSLPACWDPARPEEGLSVSQ 246

Query: 107 TAR 99
            AR
Sbjct: 247 PAR 249

>PPE30_MYCTU (P0A692) Hypothetical PPE-family protein PPE30|
          Length = 463

 Score = 31.6 bits (70), Expect = 0.81
 Identities = 29/89 (32%), Positives = 38/89 (42%)
 Frame = +1

Query: 25  VRSVQTNGRGRRE*LLSAGGRNLPSRAVGRRPILTRGLLEVHAIGRDAASTSSSKLKAVP 204
           +RS  ++G G     +SAG     S  VG   +         AI   AA  SS+ L+AVP
Sbjct: 292 LRSAISSGLGSTAPAISAGASQAGS--VGGMSVPPSWAAATPAIRTVAAVFSSTGLQAVP 349

Query: 205 ALDMMRYQRLSPDCLPLTNGGGSGGVARK 291
           A  +     LS   L    GG  GG A +
Sbjct: 350 AAAISEGSLLSQMALASVAGGALGGAAAR 378

>PPE30_MYCBO (P0A693) Hypothetical PPE-family protein PPE30|
          Length = 463

 Score = 31.6 bits (70), Expect = 0.81
 Identities = 29/89 (32%), Positives = 38/89 (42%)
 Frame = +1

Query: 25  VRSVQTNGRGRRE*LLSAGGRNLPSRAVGRRPILTRGLLEVHAIGRDAASTSSSKLKAVP 204
           +RS  ++G G     +SAG     S  VG   +         AI   AA  SS+ L+AVP
Sbjct: 292 LRSAISSGLGSTAPAISAGASQAGS--VGGMSVPPSWAAATPAIRTVAAVFSSTGLQAVP 349

Query: 205 ALDMMRYQRLSPDCLPLTNGGGSGGVARK 291
           A  +     LS   L    GG  GG A +
Sbjct: 350 AAAISEGSLLSQMALASVAGGALGGAAAR 378

>ASPP1_HUMAN (Q96KQ4) Apoptosis stimulating of p53 protein 1 (Protein|
           phosphatase 1 regulatory subunit 13B)
          Length = 1090

 Score = 31.6 bits (70), Expect = 0.81
 Identities = 24/69 (34%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
 Frame = +1

Query: 166 AASTSSSKLKAVPALDMMRYQRLSPDCLPLTNGGGSGGVAR-KPASRSFR---DDEGPAA 333
           A S  +  +KAV    ++     SP  LP  +G  S G  + +P S S     + +GPAA
Sbjct: 597 AHSALNKSVKAVYGKPVLPSGSTSPSPLPFLHGSLSTGTPQPQPPSESTEKEPEQDGPAA 656

Query: 334 ATDGSRVAS 360
             DGS V S
Sbjct: 657 PADGSTVES 665

>YMF9_YEAST (Q04958) Hypothetical UPF0028 protein YML059c|
          Length = 1679

 Score = 31.2 bits (69), Expect = 1.1
 Identities = 17/59 (28%), Positives = 31/59 (52%)
 Frame = +1

Query: 214 MMRYQRLSPDCLPLTNGGGSGGVARKPASRSFRDDEGPAAATDGSRVASYLAASQADTK 390
           + +Y+RL+P+ LPL N G SG  A   A+ +   +  PA  +  +  +S + + +   K
Sbjct: 129 LSQYKRLTPEFLPLENTGKSGSSANINAASTQSANAPPAIGSSTTGASSIIDSKKHSLK 187

>PCD16_HUMAN (Q96JQ0) Protocadherin-16 precursor (Dachsous 1) (Cadherin-19)|
            (Fibroblast cadherin 1)
          Length = 3298

 Score = 30.0 bits (66), Expect = 2.4
 Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
 Frame = -2

Query: 341  SVAAAGPSSSLKDLEAGLRAT---PPLPPPFVSGRQSGLSL 228
            S+AA GP S ++    GL  T   PP P  +  GR++GL L
Sbjct: 3059 SLAARGPDSGIQQDADGLSDTSCEPPAPDTWYKGRKAGLLL 3099

>GUDB_BACSU (P50735) NAD-specific glutamate dehydrogenase (EC 1.4.1.2)|
           (NAD-GDH)
          Length = 426

 Score = 30.0 bits (66), Expect = 2.4
 Identities = 17/50 (34%), Positives = 26/50 (52%)
 Frame = +1

Query: 172 STSSSKLKAVPALDMMRYQRLSPDCLPLTNGGGSGGVARKPASRSFRDDE 321
           + +  ++KAV AL +  +  L    + L  GGG GG+   P   SFR+ E
Sbjct: 87  NVTEKEVKAVKALSI--WMSLKCGIIDLPYGGGKGGIVCDPRDMSFRELE 134

>RGS14_HUMAN (O43566) Regulator of G-protein signaling 14 (RGS14)|
          Length = 594

 Score = 29.6 bits (65), Expect = 3.1
 Identities = 28/106 (26%), Positives = 45/106 (42%), Gaps = 5/106 (4%)
 Frame = -2

Query: 341 SVAAAGPSSSLKDLEAGL---RATPPLPPPFVSGRQSGLSLWYLIMSNAGTAFSLDE--L 177
           S+A A P  +++D+ AG+   R +  L      G +       L++    T  +  E  L
Sbjct: 314 SLALARPGLTIRDMLAGICEKRGSLYLTSSLPGGNEQKA----LVLDQDCTVLADQEVRL 369

Query: 176 VDAASLPIAWTSRRPRVKIGLRPTAREGRFLPPALSNHSLLPLPFV 39
            +  +  +  T+    V+I  +PT R    L P L  H L PL  V
Sbjct: 370 ENRITFELELTALERVVRISAKPTKRLQEALQPILEKHGLSPLEVV 415

>DYH11_HUMAN (Q96DT5) Ciliary dynein heavy chain 11 (Axonemal beta dynein heavy|
            chain 11)
          Length = 4523

 Score = 29.6 bits (65), Expect = 3.1
 Identities = 18/59 (30%), Positives = 26/59 (44%)
 Frame = -2

Query: 335  AAAGPSSSLKDLEAGLRATPPLPPPFVSGRQSGLSLWYLIMSNAGTAFSLDELVDAASL 159
            A  G   ++KD+ A LRA   L  P +  R      W+ +M   G  F ++E    A L
Sbjct: 1384 AYTGLEGTVKDMTASLRAITELQSPALRDRH-----WHQLMKAIGVKFLINEATTLADL 1437

>VGLC_PRVIF (P06024) Glycoprotein GIII precursor|
          Length = 479

 Score = 29.6 bits (65), Expect = 3.1
 Identities = 16/34 (47%), Positives = 20/34 (58%)
 Frame = -2

Query: 344 PSVAAAGPSSSLKDLEAGLRATPPLPPPFVSGRQ 243
           P+ A A P       EAG  +TPP+PPP VS R+
Sbjct: 52  PTPAPASP-------EAGAVSTPPVPPPSVSRRK 78

>YL37_CAEEL (P34428) Hypothetical protein F44B9.7|
          Length = 466

 Score = 29.6 bits (65), Expect = 3.1
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = +3

Query: 135 PPRGPRDWQGRRVDELIQTESRSRIGHDEVPKAQPGLPPA 254
           PP GP  + G ++ +       +R G    P   PG+PP+
Sbjct: 49  PPGGPPPFMGIQIKQEPMWSQENRYGMQAGPSGMPGMPPS 88

>OBF1_MOUSE (Q64693) POU domain class 2, associating factor 1 (B-cell-specific|
           coactivator OBF-1) (OCT binding factor 1) (BOB-1) (BOB1)
           (OCA-B)
          Length = 256

 Score = 29.3 bits (64), Expect = 4.0
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = +3

Query: 108 WPEANFDAWPPRGPRDWQGRRVDELIQTESRSRIGHDEVPKAQP 239
           W ++      P  PR +QG RV E ++   R + GH  V  A P
Sbjct: 3   WQKSTAPEQAPAPPRPYQGVRVKEPVKELLRRKRGHTSVGAAGP 46

>NIFY_AZOBR (P25315) Protein nifY|
          Length = 227

 Score = 29.3 bits (64), Expect = 4.0
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -1

Query: 129 RQNWPPANRSRRQVPSSCAEQSLSSPSPVRLH 34
           R+ WPP  R RR +P++   +S SS    +LH
Sbjct: 34  RRLWPPCPRPRRGLPAATTSRSPSSRPTPQLH 65

>PAPPA_HUMAN (Q13219) Pappalysin-1 precursor (EC 3.4.24.79)|
           (Pregnancy-associated plasma protein-A) (PAPP-A)
           (Insulin-like growth factor-dependent IGF-binding
           protein 4 protease) (IGF-dependent IGFBP-4 protease)
           (IGFBP-4ase)
          Length = 1628

 Score = 29.3 bits (64), Expect = 4.0
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = -2

Query: 371 AARYEATREPSVAAAGPSSSLKDLEAGLRATPPLPPP 261
           A R      P   AAGP++       G RA+PP PPP
Sbjct: 28  ARRDPRAGRPPRPAAGPATCATRAARGRRASPPPPPP 64

>DOF37_ARATH (Q43385) Dof zinc finger protein DOF3.7 (AtDOF3.7) (Dof affecting|
           germination 1) (Transcription factor BBFa) (AtBBFa)
           (RolB domain B factor a)
          Length = 296

 Score = 28.9 bits (63), Expect = 5.3
 Identities = 16/69 (23%), Positives = 29/69 (42%)
 Frame = -1

Query: 231 PLVPHHVQCGNGFQFG*ARRRGVPANRVDLEEATRQNWPPANRSRRQVPSSCAEQSLSSP 52
           P +P + Q  N   F     +G+  N ++  +  + N    N + R +      + LSS 
Sbjct: 213 PTMPDYKQSNNNLSFSIDHHQGIGHNTINSNQRAQDNNDDMNGASRVLFPFSDMKELSST 272

Query: 51  SPVRLHGTN 25
           +  + HG N
Sbjct: 273 TQEKSHGNN 281

>UBP10_MOUSE (P52479) Ubiquitin carboxyl-terminal hydrolase 10 (EC 3.1.2.15)|
           (Ubiquitin thioesterase 10)
           (Ubiquitin-specific-processing protease 10)
           (Deubiquitinating enzyme 10)
          Length = 792

 Score = 28.9 bits (63), Expect = 5.3
 Identities = 18/65 (27%), Positives = 30/65 (46%)
 Frame = -2

Query: 323 PSSSLKDLEAGLRATPPLPPPFVSGRQSGLSLWYLIMSNAGTAFSLDELVDAASLPIAWT 144
           PSSS        + +PP+P P  S +Q  +    + +S    A  + EL++  +L     
Sbjct: 345 PSSSSPMAYVETKCSPPVPSPLASEKQMEVKEGLVPVSEDPVAIKIAELLETVTLIHKPV 404

Query: 143 SRRPR 129
           S +PR
Sbjct: 405 SLQPR 409

>CN021_HUMAN (Q86U38) Protein C14orf21|
          Length = 636

 Score = 28.5 bits (62), Expect = 6.9
 Identities = 18/51 (35%), Positives = 20/51 (39%)
 Frame = -1

Query: 231 PLVPHHVQCGNGFQFG*ARRRGVPANRVDLEEATRQNWPPANRSRRQVPSS 79
           P  PH V  G  F  G  R RG   +   L    RQ WPP +      P S
Sbjct: 5   PRSPHKV--GRRFPAGGKRGRGAKGSGRPLPGRKRQPWPPPDGRSEPAPDS 53

>YNE1_CAEEL (P30640) Hypothetical protein R08D7.1|
          Length = 458

 Score = 28.5 bits (62), Expect = 6.9
 Identities = 17/42 (40%), Positives = 22/42 (52%)
 Frame = -1

Query: 174 RRGVPANRVDLEEATRQNWPPANRSRRQVPSSCAEQSLSSPS 49
           RR  P  R D  ++   N PP NRSRR   +S   +  SSP+
Sbjct: 177 RRSPPRTRRDRHDS--DNSPPRNRSRRDSDNSPPRRRPSSPA 216

>SPT_ARATH (Q9FUA4) Protein SPATULA|
          Length = 373

 Score = 28.5 bits (62), Expect = 6.9
 Identities = 24/90 (26%), Positives = 34/90 (37%)
 Frame = +1

Query: 91  LPSRAVGRRPILTRGLLEVHAIGRDAASTSSSKLKAVPALDMMRYQRLSPDCLPLTNGGG 270
           LPS         T  L+ VH  G   A  S S +   P  D +   +   D   +  GGG
Sbjct: 63  LPSYYSPATTTTTASLIGVHGSGDPHADNSRSLVSHHPPSDSVLMSKRVGDFSEVLIGGG 122

Query: 271 SGGVARKPASRSFRDDEGPAAATDGSRVAS 360
           SG  A         ++      + G+RV+S
Sbjct: 123 SGSAAACFGFSGGGNNNNVQGNSSGTRVSS 152

>BAT2_MACMU (Q5TM26) Large proline-rich protein BAT2 (HLA-B-associated|
           transcript 2)
          Length = 2160

 Score = 28.1 bits (61), Expect = 9.0
 Identities = 19/58 (32%), Positives = 24/58 (41%)
 Frame = +3

Query: 78  RRKEPAFSSGWPEANFDAWPPRGPRDWQGRRVDELIQTESRSRIGHDEVPKAQPGLPP 251
           + +E A  S  P  +         RD  GR  DEL   +S+   GHD     QP  PP
Sbjct: 184 KERESAEQSSGPGPSLRPQNSTTWRDGGGRGPDELEGPDSKLHHGHDPRGALQPSGPP 241

>INSM_ECOLI (Q47718) Transposase insM for insertion sequence element IS600|
          Length = 198

 Score = 28.1 bits (61), Expect = 9.0
 Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
 Frame = +1

Query: 55  RRE*LLSAG--GRNLPSRAVGRRPILTRGLLEVHAIGRDAASTSS 183
           R+E  L++G   +N P +  GRR +L   +LE+H I   +A   S
Sbjct: 6   RKECPLNSGYLRKNRPEKPDGRRAVLRSQVLELHGISHGSAGARS 50

>FBX34_MOUSE (Q80XI1) F-box only protein 34|
          Length = 695

 Score = 28.1 bits (61), Expect = 9.0
 Identities = 22/71 (30%), Positives = 33/71 (46%)
 Frame = +1

Query: 175 TSSSKLKAVPALDMMRYQRLSPDCLPLTNGGGSGGVARKPASRSFRDDEGPAAATDGSRV 354
           T  S+ + V  LDM+   RL  +CL        G ++R   + SFR + G    T+GS+ 
Sbjct: 268 TGRSQGEPVRVLDMVA--RLESECLKHQGQREPGSLSR---NNSFRRNVGRVLLTNGSQA 322

Query: 355 ASYLAASQADT 387
           +       ADT
Sbjct: 323 SDKSEEGSADT 333

>CWC22_NEUCR (Q7RX84) Pre-mRNA-splicing factor cwc-22|
          Length = 1010

 Score = 28.1 bits (61), Expect = 9.0
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = -1

Query: 174 RRGVPANRVDLEEATRQNWPPANRSRRQVP 85
           R+G PA RVD   + R   PP  R  R  P
Sbjct: 104 RQGSPARRVDRSSSPRARSPPPRRHSRSPP 133


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,260,742
Number of Sequences: 219361
Number of extensions: 1175031
Number of successful extensions: 5446
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 5114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5437
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2336739400
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)