ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet09e05 |
|---|---|
| Clone Library Name | barley_pub |
>SYFB_PSE14 (Q48JR8) Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)| (Phenylalanine--tRNA ligase beta chain) (PheRS) Length = 792 Score = 30.4 bits (67), Expect = 2.4 Identities = 16/40 (40%), Positives = 22/40 (55%) Frame = -1 Query: 400 LLVDEVRHEVRVLQARGEGRAVAGLGPEAAVLHEVDVPRP 281 L +D+ EV + RG+ +VAGL E L+ DV RP Sbjct: 150 LSLDDASIEVDLTPNRGDCLSVAGLAREVGALYATDVTRP 189
>SYFB_MYCTU (P94985) Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)| (Phenylalanine--tRNA ligase beta chain) (PheRS) Length = 831 Score = 30.0 bits (66), Expect = 3.2 Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 1/65 (1%) Frame = -1 Query: 472 VGVRHACLLAEPGALQQPHREGDALL-VDEVRHEVRVLQARGEGRAVAGLGPEAAVLHEV 296 +G H+ +L P +P +G +L +D+V + + RG +V GL E A +++ Sbjct: 133 LGADHSGILVLPPGAAEPGADGAGVLGLDDVVFHLAITPDRGYCMSVRGLARELACAYDL 192 Query: 295 DVPRP 281 D P Sbjct: 193 DFVDP 197
>SYFB_MYCBO (Q7VEV3) Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)| (Phenylalanine--tRNA ligase beta chain) (PheRS) Length = 831 Score = 30.0 bits (66), Expect = 3.2 Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 1/65 (1%) Frame = -1 Query: 472 VGVRHACLLAEPGALQQPHREGDALL-VDEVRHEVRVLQARGEGRAVAGLGPEAAVLHEV 296 +G H+ +L P +P +G +L +D+V + + RG +V GL E A +++ Sbjct: 133 LGADHSGILVLPPGAAEPGADGAGVLGLDDVVFHLAITPDRGYCMSVRGLARELACAYDL 192 Query: 295 DVPRP 281 D P Sbjct: 193 DFVDP 197
>SYFB_PSESM (Q883H7) Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)| (Phenylalanine--tRNA ligase beta chain) (PheRS) Length = 792 Score = 29.6 bits (65), Expect = 4.1 Identities = 15/38 (39%), Positives = 21/38 (55%) Frame = -1 Query: 394 VDEVRHEVRVLQARGEGRAVAGLGPEAAVLHEVDVPRP 281 +D+ EV + RG+ +VAGL E L+ DV RP Sbjct: 152 LDDASIEVDLTPNRGDCLSVAGLAREVGALYAADVTRP 189
>METE_NEIMA (Q9JUT6) 5-methyltetrahydropteroyltriglutamate--homocysteine| methyltransferase (EC 2.1.1.14) (Methionine synthase, vitamin-B12 independent isozyme) (Cobalamin-independent methionine synthase) Length = 758 Score = 29.3 bits (64), Expect = 5.4 Identities = 14/52 (26%), Positives = 25/52 (48%) Frame = -1 Query: 412 EGDALLVDEVRHEVRVLQARGEGRAVAGLGPEAAVLHEVDVPRPPHAPHLLQ 257 + D + ++ R ++ +L A GE + +GP +H VP HLL+ Sbjct: 660 DADVITIETSRSDMELLTAFGEFKYPNDIGPGVYDIHSPRVPTEAEVEHLLR 711
>SYFB_MYCPA (Q740J0) Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)| (Phenylalanine--tRNA ligase beta chain) (PheRS) Length = 828 Score = 28.9 bits (63), Expect = 7.1 Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 1/65 (1%) Frame = -1 Query: 472 VGVRHACLLAEPGALQQPHREGDALL-VDEVRHEVRVLQARGEGRAVAGLGPEAAVLHEV 296 +G H+ +L P +P +G A+L +D+V + + RG ++ GL E A +++ Sbjct: 133 LGADHSGILVLPPGTAEPGADGAAVLGLDDVIFHLAITPDRGYCMSLRGLAREIACAYDL 192 Query: 295 DVPRP 281 + P Sbjct: 193 EFVDP 197
>PURL_OCEIH (Q8ES96) Phosphoribosylformylglycinamidine synthase II (EC 6.3.5.3)| (FGAM synthase II) Length = 742 Score = 28.9 bits (63), Expect = 7.1 Identities = 15/38 (39%), Positives = 20/38 (52%) Frame = -1 Query: 367 VLQARGEGRAVAGLGPEAAVLHEVDVPRPPHAPHLLQG 254 VLQ GEG V +G E AV+ +++ P A QG Sbjct: 74 VLQGPGEGAGVIDIGDEQAVVFKIESHNHPSAVEPYQG 111
>PURL_BACHD (Q9KF57) Phosphoribosylformylglycinamidine synthase II (EC 6.3.5.3)| (FGAM synthase II) Length = 743 Score = 28.9 bits (63), Expect = 7.1 Identities = 14/39 (35%), Positives = 21/39 (53%) Frame = -1 Query: 370 RVLQARGEGRAVAGLGPEAAVLHEVDVPRPPHAPHLLQG 254 +VLQ GEG + +G E AV+ +++ P A QG Sbjct: 73 KVLQGPGEGAGIIDIGDEQAVVFKIESHNHPSAIEPYQG 111
>SYFB_PSEU2 (Q4ZUG2) Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)| (Phenylalanine--tRNA ligase beta chain) (PheRS) Length = 792 Score = 28.9 bits (63), Expect = 7.1 Identities = 15/40 (37%), Positives = 22/40 (55%) Frame = -1 Query: 400 LLVDEVRHEVRVLQARGEGRAVAGLGPEAAVLHEVDVPRP 281 L +D+ EV + RG+ +VAGL E L+ +V RP Sbjct: 150 LSLDDASIEVDLTPNRGDCLSVAGLAREVGALYAAEVTRP 189
>METE_NEIMB (Q9JZQ2) 5-methyltetrahydropteroyltriglutamate--homocysteine| methyltransferase (EC 2.1.1.14) (Methionine synthase, vitamin-B12 independent isozyme) (Cobalamin-independent methionine synthase) Length = 758 Score = 28.9 bits (63), Expect = 7.1 Identities = 14/52 (26%), Positives = 25/52 (48%) Frame = -1 Query: 412 EGDALLVDEVRHEVRVLQARGEGRAVAGLGPEAAVLHEVDVPRPPHAPHLLQ 257 + D + ++ R ++ +L A GE + +GP +H VP HLL+ Sbjct: 660 DADVITIETSRSDMELLTAFGEFQYPNDIGPGVYDIHSPRVPTEAEVEHLLR 711
>PURL_BACSU (P12042) Phosphoribosylformylglycinamidine synthase II (EC 6.3.5.3)| (FGAM synthase II) Length = 742 Score = 28.5 bits (62), Expect = 9.2 Identities = 14/39 (35%), Positives = 20/39 (51%) Frame = -1 Query: 370 RVLQARGEGRAVAGLGPEAAVLHEVDVPRPPHAPHLLQG 254 RVLQ GEG + +G AV+ +++ P A QG Sbjct: 73 RVLQGPGEGAGIVDIGDNQAVVFKIESHNHPSALEPYQG 111
>PURL_BACLD (Q65MS8) Phosphoribosylformylglycinamidine synthase II (EC 6.3.5.3)| (FGAM synthase II) Length = 742 Score = 28.5 bits (62), Expect = 9.2 Identities = 14/39 (35%), Positives = 20/39 (51%) Frame = -1 Query: 370 RVLQARGEGRAVAGLGPEAAVLHEVDVPRPPHAPHLLQG 254 RVLQ GEG + +G AV+ +++ P A QG Sbjct: 73 RVLQGPGEGAGIVDIGDNQAVVFKIESHNHPSAIEPYQG 111
>ZBT7A_RAT (Q9QZ48) Zinc finger and BTB domain-containing protein 7A| (Leukemia/lymphoma-related factor) (Osteoclast-derived zinc finger protein) Length = 569 Score = 28.5 bits (62), Expect = 9.2 Identities = 23/71 (32%), Positives = 29/71 (40%), Gaps = 8/71 (11%) Frame = -1 Query: 346 GRAVAGLGPEAAVLHEVDVPRPPHAPHLLQG--RRQDHRRQDVGRRQGQHLLQDLL---- 185 GRA A G E AV P P +P L G +D DV LLQ ++ Sbjct: 267 GRAGASTGEEEAVALSEAAPEPGDSPGFLSGAAEGEDGDAADVDGLAASTLLQQMMSSVG 326 Query: 184 --GANDNGARP 158 G +D +RP Sbjct: 327 RAGDSDEESRP 337 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.313 0.140 0.431 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 45,747,585 Number of Sequences: 219361 Number of extensions: 715960 Number of successful extensions: 1920 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 1910 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1920 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3130907202 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits)
