ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet09a05 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_197543.1| Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBb0060I05.14), mRNA Length = 519 Score = 234 bits (118), Expect = 2e-58 Identities = 296/354 (83%), Gaps = 6/354 (1%) Strand = Plus / Plus Query: 128 gcgctccgccggccccgggctccccgcgcttccgtcgct---gcccggcctcgcgtccca 184 |||||||| ||||| ||| ||||||||||||||| | | |||||||||||| ||||| Sbjct: 81 gcgctccgtcggcctcggcctccccgcgcttccgccattattgcccggcctcgcctccca 140 Query: 185 cggccaaccccgcgttgcctccttctgcaaaaggctcgcgaggaacgtggtgtcaatggc 244 |||||| ||||| || || ||||||||||| ||||| ||||||||||||||| | ||||| Sbjct: 141 cggccagccccgtgtcgcgtccttctgcaagaggctggcgaggaacgtggtggccatggc 200 Query: 245 cgccagtgag---ccggcggcgccgctggccgaaaacgccgagcttaccgagttgtttaa 301 || | ||| |||||||||||||| |||| ||||| ||| | |||||||| | || Sbjct: 201 ggcgggggaggcgccggcggcgccgctcgccgccaacgcggagatcaccgagttcatcaa 260 Query: 302 ctccttgaaacaagagtgggacagggtgggagacaagtacgcggtgaccacgctggccgt 361 | || | |||||||||||||||||| | | ||||||||||||||||| |||||||| || Sbjct: 261 cgccctcaaacaagagtgggacaggattgaggacaagtacgcggtgacgacgctggcggt 320 Query: 362 cgccgccacgctcggcatgtggagcgccggcggagtagtatcggcaatcgacaggctccc 421 ||| || ||||||| |||||||||||||||||||| ||||||||||| |||||||| || Sbjct: 321 cgctgcgtcgctcgggatgtggagcgccggcggagttgtatcggcaattgacaggcttcc 380 Query: 422 cgtggttccaggtctcatggaggtcgttggcatcggctacagcgggtggtttgc 475 | ||||| ||||||||||| | |||||||| |||||||||||||||||||| Sbjct: 381 tatcgttcctggtctcatggaagctgttggcattggctacagcgggtggtttgc 434
>dbj|AK066849.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013075C23, full insert sequence Length = 779 Score = 234 bits (118), Expect = 2e-58 Identities = 296/354 (83%), Gaps = 6/354 (1%) Strand = Plus / Plus Query: 128 gcgctccgccggccccgggctccccgcgcttccgtcgct---gcccggcctcgcgtccca 184 |||||||| ||||| ||| ||||||||||||||| | | |||||||||||| ||||| Sbjct: 159 gcgctccgtcggcctcggcctccccgcgcttccgccattattgcccggcctcgcctccca 218 Query: 185 cggccaaccccgcgttgcctccttctgcaaaaggctcgcgaggaacgtggtgtcaatggc 244 |||||| ||||| || || ||||||||||| ||||| ||||||||||||||| | ||||| Sbjct: 219 cggccagccccgtgtcgcgtccttctgcaagaggctggcgaggaacgtggtggccatggc 278 Query: 245 cgccagtgag---ccggcggcgccgctggccgaaaacgccgagcttaccgagttgtttaa 301 || | ||| |||||||||||||| |||| ||||| ||| | |||||||| | || Sbjct: 279 ggcgggggaggcgccggcggcgccgctcgccgccaacgcggagatcaccgagttcatcaa 338 Query: 302 ctccttgaaacaagagtgggacagggtgggagacaagtacgcggtgaccacgctggccgt 361 | || | |||||||||||||||||| | | ||||||||||||||||| |||||||| || Sbjct: 339 cgccctcaaacaagagtgggacaggattgaggacaagtacgcggtgacgacgctggcggt 398 Query: 362 cgccgccacgctcggcatgtggagcgccggcggagtagtatcggcaatcgacaggctccc 421 ||| || ||||||| |||||||||||||||||||| ||||||||||| |||||||| || Sbjct: 399 cgctgcgtcgctcgggatgtggagcgccggcggagttgtatcggcaattgacaggcttcc 458 Query: 422 cgtggttccaggtctcatggaggtcgttggcatcggctacagcgggtggtttgc 475 | ||||| ||||||||||| | |||||||| |||||||||||||||||||| Sbjct: 459 tatcgttcctggtctcatggaagctgttggcattggctacagcgggtggtttgc 512
>dbj|AK103995.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-018-F12, full insert sequence Length = 758 Score = 226 bits (114), Expect = 5e-56 Identities = 295/354 (83%), Gaps = 6/354 (1%) Strand = Plus / Plus Query: 128 gcgctccgccggccccgggctccccgcgcttccgtcgct---gcccggcctcgcgtccca 184 |||||||| ||||| ||| ||||||||||||||| | | |||||||||||| |||| Sbjct: 155 gcgctccgtcggcctcggcctccccgcgcttccgccattattgcccggcctcgcctcccg 214 Query: 185 cggccaaccccgcgttgcctccttctgcaaaaggctcgcgaggaacgtggtgtcaatggc 244 |||||| ||||| || || ||||||||||| ||||| ||||||||||||||| | ||||| Sbjct: 215 cggccagccccgtgtcgcgtccttctgcaagaggctggcgaggaacgtggtggccatggc 274 Query: 245 cgccagtgag---ccggcggcgccgctggccgaaaacgccgagcttaccgagttgtttaa 301 || | ||| |||||||||||||| |||| ||||| ||| | |||||||| | || Sbjct: 275 ggcgggggaggcgccggcggcgccgctcgccgccaacgcggagatcaccgagttcatcaa 334 Query: 302 ctccttgaaacaagagtgggacagggtgggagacaagtacgcggtgaccacgctggccgt 361 | || | |||||||||||||||||| | | ||||||||||||||||| |||||||| || Sbjct: 335 cgccctcaaacaagagtgggacaggattgaggacaagtacgcggtgacgacgctggcggt 394 Query: 362 cgccgccacgctcggcatgtggagcgccggcggagtagtatcggcaatcgacaggctccc 421 ||| || ||||||| |||||||||||||||||||| ||||||||||| |||||||| || Sbjct: 395 cgctgcgtcgctcgggatgtggagcgccggcggagttgtatcggcaattgacaggcttcc 454 Query: 422 cgtggttccaggtctcatggaggtcgttggcatcggctacagcgggtggtttgc 475 | ||||| ||||||||||| | |||||||| |||||||||||||||||||| Sbjct: 455 tatcgttcctggtctcatggaagctgttggcattggctacagcgggtggtttgc 508
>gb|AY107288.1| Zea mays PCO086668 mRNA sequence Length = 471 Score = 194 bits (98), Expect = 2e-46 Identities = 155/174 (89%) Strand = Plus / Plus Query: 306 ttgaaacaagagtgggacagggtgggagacaagtacgcggtgaccacgctggccgtcgcc 365 |||||| | |||||||||||| | | ||||||||||||||||||||||| ||||||||| Sbjct: 45 ttgaaaaaggagtgggacaggatcgaggacaagtacgcggtgaccacgctcgccgtcgcc 104 Query: 366 gccacgctcggcatgtggagcgccggcggagtagtatcggcaatcgacaggctccccgtg 425 |||||||| ||||||||||||||||| |||||||| ||||||||||| |||||||||||| Sbjct: 105 gccacgcttggcatgtggagcgccggtggagtagtgtcggcaatcgataggctccccgtg 164 Query: 426 gttccaggtctcatggaggtcgttggcatcggctacagcgggtggtttgcgtac 479 ||||| ||||| ||| ||| |||||| || || |||||||||||||| |||||| Sbjct: 165 gttcctggtctgatgcaggccgttggaattggatacagcgggtggttcgcgtac 218
>gb|AC092697.6| Oryza sativa chromosome 10 BAC OSJNBb0060I05 genomic sequence, complete sequence Length = 105841 Score = 91.7 bits (46), Expect = 2e-15 Identities = 79/90 (87%) Strand = Plus / Plus Query: 316 agtgggacagggtgggagacaagtacgcggtgaccacgctggccgtcgccgccacgctcg 375 ||||||||||| | | ||||||||||||||||| |||||||| ||||| || |||||| Sbjct: 90541 agtgggacaggattgaggacaagtacgcggtgacgacgctggcggtcgctgcgtcgctcg 90600 Query: 376 gcatgtggagcgccggcggagtagtatcgg 405 | |||||||||||||||||||| ||||||| Sbjct: 90601 ggatgtggagcgccggcggagttgtatcgg 90630 Score = 58.0 bits (29), Expect = 3e-05 Identities = 73/87 (83%), Gaps = 3/87 (3%) Strand = Plus / Plus Query: 128 gcgctccgccggccccgggctccccgcgcttccgtcgct---gcccggcctcgcgtccca 184 |||||||| ||||| ||| ||||||||||||||| | | |||||||||||| ||||| Sbjct: 90168 gcgctccgtcggcctcggcctccccgcgcttccgccattattgcccggcctcgcctccca 90227 Query: 185 cggccaaccccgcgttgcctccttctg 211 |||||| ||||| || || |||||||| Sbjct: 90228 cggccagccccgtgtcgcgtccttctg 90254 Score = 48.1 bits (24), Expect = 0.027 Identities = 54/64 (84%) Strand = Plus / Plus Query: 404 ggcaatcgacaggctccccgtggttccaggtctcatggaggtcgttggcatcggctacag 463 |||||| |||||||| || | ||||| ||||||||||| | |||||||| |||||||| Sbjct: 90738 ggcaattgacaggcttcctatcgttcctggtctcatggaagctgttggcattggctacag 90797 Query: 464 cggg 467 |||| Sbjct: 90798 cggg 90801
>gb|AC074196.14| Oryza sativa chromosome 10 BAC OSJNBa0040D23 genomic sequence, complete sequence Length = 134102 Score = 91.7 bits (46), Expect = 2e-15 Identities = 79/90 (87%) Strand = Plus / Plus Query: 316 agtgggacagggtgggagacaagtacgcggtgaccacgctggccgtcgccgccacgctcg 375 ||||||||||| | | ||||||||||||||||| |||||||| ||||| || |||||| Sbjct: 15187 agtgggacaggattgaggacaagtacgcggtgacgacgctggcggtcgctgcgtcgctcg 15246 Query: 376 gcatgtggagcgccggcggagtagtatcgg 405 | |||||||||||||||||||| ||||||| Sbjct: 15247 ggatgtggagcgccggcggagttgtatcgg 15276 Score = 58.0 bits (29), Expect = 3e-05 Identities = 73/87 (83%), Gaps = 3/87 (3%) Strand = Plus / Plus Query: 128 gcgctccgccggccccgggctccccgcgcttccgtcgct---gcccggcctcgcgtccca 184 |||||||| ||||| ||| ||||||||||||||| | | |||||||||||| ||||| Sbjct: 14814 gcgctccgtcggcctcggcctccccgcgcttccgccattattgcccggcctcgcctccca 14873 Query: 185 cggccaaccccgcgttgcctccttctg 211 |||||| ||||| || || |||||||| Sbjct: 14874 cggccagccccgtgtcgcgtccttctg 14900 Score = 48.1 bits (24), Expect = 0.027 Identities = 54/64 (84%) Strand = Plus / Plus Query: 404 ggcaatcgacaggctccccgtggttccaggtctcatggaggtcgttggcatcggctacag 463 |||||| |||||||| || | ||||| ||||||||||| | |||||||| |||||||| Sbjct: 15384 ggcaattgacaggcttcctatcgttcctggtctcatggaagctgttggcattggctacag 15443 Query: 464 cggg 467 |||| Sbjct: 15444 cggg 15447
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 91.7 bits (46), Expect = 2e-15 Identities = 79/90 (87%) Strand = Plus / Plus Query: 316 agtgggacagggtgggagacaagtacgcggtgaccacgctggccgtcgccgccacgctcg 375 ||||||||||| | | ||||||||||||||||| |||||||| ||||| || |||||| Sbjct: 20375039 agtgggacaggattgaggacaagtacgcggtgacgacgctggcggtcgctgcgtcgctcg 20375098 Query: 376 gcatgtggagcgccggcggagtagtatcgg 405 | |||||||||||||||||||| ||||||| Sbjct: 20375099 ggatgtggagcgccggcggagttgtatcgg 20375128 Score = 58.0 bits (29), Expect = 3e-05 Identities = 73/87 (83%), Gaps = 3/87 (3%) Strand = Plus / Plus Query: 128 gcgctccgccggccccgggctccccgcgcttccgtcgct---gcccggcctcgcgtccca 184 |||||||| ||||| ||| ||||||||||||||| | | |||||||||||| ||||| Sbjct: 20374666 gcgctccgtcggcctcggcctccccgcgcttccgccattattgcccggcctcgcctccca 20374725 Query: 185 cggccaaccccgcgttgcctccttctg 211 |||||| ||||| || || |||||||| Sbjct: 20374726 cggccagccccgtgtcgcgtccttctg 20374752 Score = 48.1 bits (24), Expect = 0.027 Identities = 54/64 (84%) Strand = Plus / Plus Query: 404 ggcaatcgacaggctccccgtggttccaggtctcatggaggtcgttggcatcggctacag 463 |||||| |||||||| || | ||||| ||||||||||| | |||||||| |||||||| Sbjct: 20375236 ggcaattgacaggcttcctatcgttcctggtctcatggaagctgttggcattggctacag 20375295 Query: 464 cggg 467 |||| Sbjct: 20375296 cggg 20375299
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 91.7 bits (46), Expect = 2e-15 Identities = 79/90 (87%) Strand = Plus / Plus Query: 316 agtgggacagggtgggagacaagtacgcggtgaccacgctggccgtcgccgccacgctcg 375 ||||||||||| | | ||||||||||||||||| |||||||| ||||| || |||||| Sbjct: 20386311 agtgggacaggattgaggacaagtacgcggtgacgacgctggcggtcgctgcgtcgctcg 20386370 Query: 376 gcatgtggagcgccggcggagtagtatcgg 405 | |||||||||||||||||||| ||||||| Sbjct: 20386371 ggatgtggagcgccggcggagttgtatcgg 20386400 Score = 58.0 bits (29), Expect = 3e-05 Identities = 73/87 (83%), Gaps = 3/87 (3%) Strand = Plus / Plus Query: 128 gcgctccgccggccccgggctccccgcgcttccgtcgct---gcccggcctcgcgtccca 184 |||||||| ||||| ||| ||||||||||||||| | | |||||||||||| ||||| Sbjct: 20385938 gcgctccgtcggcctcggcctccccgcgcttccgccattattgcccggcctcgcctccca 20385997 Query: 185 cggccaaccccgcgttgcctccttctg 211 |||||| ||||| || || |||||||| Sbjct: 20385998 cggccagccccgtgtcgcgtccttctg 20386024 Score = 48.1 bits (24), Expect = 0.027 Identities = 54/64 (84%) Strand = Plus / Plus Query: 404 ggcaatcgacaggctccccgtggttccaggtctcatggaggtcgttggcatcggctacag 463 |||||| |||||||| || | ||||| ||||||||||| | |||||||| |||||||| Sbjct: 20386508 ggcaattgacaggcttcctatcgttcctggtctcatggaagctgttggcattggctacag 20386567 Query: 464 cggg 467 |||| Sbjct: 20386568 cggg 20386571
>ref|XM_846773.1| PREDICTED: Canis familiaris similar to alanine aminotransferase 2 (LOC609510), mRNA Length = 1125 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Plus Query: 138 ggccccgggctccccgcgcttcc 160 ||||||||||||||||||||||| Sbjct: 1065 ggccccgggctccccgcgcttcc 1087
>emb|AL939108.1|SCO939108 Streptomyces coelicolor A3(2) complete genome; segment 5/29 Length = 339650 Score = 44.1 bits (22), Expect = 0.42 Identities = 22/22 (100%) Strand = Plus / Minus Query: 353 gctggccgtcgccgccacgctc 374 |||||||||||||||||||||| Sbjct: 242113 gctggccgtcgccgccacgctc 242092
>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome Length = 7074893 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 242 ggccgccagtgagccggcggcgccg 266 ||||||||||||||||| ||||||| Sbjct: 3376363 ggccgccagtgagccggtggcgccg 3376387
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 353 gctggccgtcgccgccacgct 373 ||||||||||||||||||||| Sbjct: 2422447 gctggccgtcgccgccacgct 2422427
>emb|BX640444.1| Bordetella bronchiseptica strain RB50, complete genome; segment 8/16 Length = 349008 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 260 ggcgccgctggccgaaaacg 279 |||||||||||||||||||| Sbjct: 121673 ggcgccgctggccgaaaacg 121654
>emb|BX640427.1| Bordetella parapertussis strain 12822, complete genome; segment 5/14 Length = 348997 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 260 ggcgccgctggccgaaaacg 279 |||||||||||||||||||| Sbjct: 44733 ggcgccgctggccgaaaacg 44714
>emb|BX640417.1| Bordetella pertussis strain Tohama I, complete genome; segment 7/12 Length = 348934 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 260 ggcgccgctggccgaaaacg 279 |||||||||||||||||||| Sbjct: 184708 ggcgccgctggccgaaaacg 184727
>gb|CP000135.1| Rhizobium etli CFN 42 plasmid p42b, complete sequence Length = 184338 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 37 cgaaggcatcgatctccatg 56 |||||||||||||||||||| Sbjct: 38540 cgaaggcatcgatctccatg 38559
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 253 agccggcggcgccgctggcc 272 |||||||||||||||||||| Sbjct: 5052673 agccggcggcgccgctggcc 5052692
>gb|AC091865.3| Homo sapiens chromosome 5 clone CTD-2354N18, complete sequence Length = 87256 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 6 aagtggtggtggtggcgaga 25 |||||||||||||||||||| Sbjct: 36789 aagtggtggtggtggcgaga 36770
>gb|AE016820.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome VII, complete sequence Length = 1476513 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 170 cggcctcgcgtcccacggcc 189 |||||||||||||||||||| Sbjct: 1071006 cggcctcgcgtcccacggcc 1071025
>gb|AC026722.4|AC026722 Homo sapiens chromosome 5 clone CTD-2203N22, complete sequence Length = 150162 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 6 aagtggtggtggtggcgaga 25 |||||||||||||||||||| Sbjct: 75964 aagtggtggtggtggcgaga 75945
>gb|CP000157.1| Erythrobacter litoralis HTCC2594, complete genome Length = 3052398 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 122 ggccgcgcgctccgccggccccgg 145 ||||||||||||||||||| |||| Sbjct: 1958156 ggccgcgcgctccgccggcaccgg 1958133
>gb|AE005061.1| Halobacterium sp. NRC-1 section 92 of 170 of the complete genome Length = 13579 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 343 cggtgaccacgctggccgtcgccg 366 |||||||||||||||||| ||||| Sbjct: 3180 cggtgaccacgctggccgacgccg 3203
>dbj|AB112921.1| Gordonia sp. TY-5 adh2 genes for alcohol dehydrogenase, complete cds Length = 1056 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 340 acgcggtgaccacgctggccgtcg 363 |||| ||||||||||||||||||| Sbjct: 212 acgccgtgaccacgctggccgtcg 235
>dbj|D50308.1| Lysobacter lactamgenus DNA for alpha-aminoadipyl-cysteinyl-valine synthetase, complete cds Length = 11401 Score = 40.1 bits (20), Expect = 6.5 Identities = 32/36 (88%) Strand = Plus / Plus Query: 359 cgtcgccgccacgctcggcatgtggagcgccggcgg 394 ||||| ||||||||||||| |||||| |||||||| Sbjct: 1104 cgtcgtcgccacgctcggcctgtggaaggccggcgg 1139 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,006,022 Number of Sequences: 3902068 Number of extensions: 3006022 Number of successful extensions: 77110 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 24 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 76563 Number of HSP's gapped (non-prelim): 547 length of query: 483 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 461 effective length of database: 17,147,199,772 effective search space: 7904859094892 effective search space used: 7904859094892 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
