ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet08h10 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AF498269.1| Haynaldia villosa clone kong32 mRNA Length = 1219 Score = 218 bits (110), Expect = 6e-54 Identities = 125/130 (96%) Strand = Plus / Plus Query: 82 aaatggccaccatcagcgccgccgcggcgaccaccgtcgtcgcccgtgccgcgatcgcca 141 ||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct: 690 aaatggctaccatcagcgccgccgcggcgaccaccgtcgtcgcccgtgccgccatcgcca 749 Query: 142 ggctgcaggccccaggtctgccccagctgaggacgaggggcgagagggtgaggtgcagct 201 ||| |||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct: 750 ggccgcaggccctaggtctgccccagctgaggacgaggagcgagagggtgaggtgcagct 809 Query: 202 actccaagga 211 |||||||||| Sbjct: 810 actccaagga 819 Score = 73.8 bits (37), Expect = 2e-10 Identities = 46/48 (95%), Gaps = 2/48 (4%) Strand = Plus / Plus Query: 25 cccgagcaagccacactctccagcaccagcagcggccggcggcaagca 72 ||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 628 cccgagcaagccacactctccagcaccagca--ggccggcggcaagca 673
>gb|AY103930.1| Zea mays PCO070877 mRNA sequence Length = 829 Score = 73.8 bits (37), Expect = 2e-10 Identities = 55/61 (90%) Strand = Plus / Plus Query: 84 atggccaccatcagcgccgccgcggcgaccaccgtcgtcgcccgtgccgcgatcgccagg 143 ||||||||| |||||||||||| || ||||||| |||| ||||| ||||||||||||||| Sbjct: 142 atggccaccgtcagcgccgccgtggtgaccaccatcgttgcccgcgccgcgatcgccagg 201 Query: 144 c 144 | Sbjct: 202 c 202 Score = 60.0 bits (30), Expect = 3e-06 Identities = 48/54 (88%) Strand = Plus / Plus Query: 167 gctgaggacgaggggcgagagggtgaggtgcagctactccaaggaggcgacccc 220 ||||||| ||||| ||||||||||| ||||||||||| ||||||| ||| |||| Sbjct: 237 gctgagggcgaggagcgagagggtgcggtgcagctacgccaaggacgcggcccc 290
>ref|NM_191445.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 480 Score = 65.9 bits (33), Expect = 5e-08 Identities = 45/49 (91%) Strand = Plus / Plus Query: 84 atggccaccatcagcgccgccgcggcgaccaccgtcgtcgcccgtgccg 132 ||||||||| |||||||||||||||||||| ||||||| ||||| |||| Sbjct: 1 atggccaccgtcagcgccgccgcggcgacctccgtcgttgcccgcgccg 49 Score = 63.9 bits (32), Expect = 2e-07 Identities = 38/40 (95%) Strand = Plus / Plus Query: 176 gaggggcgagagggtgaggtgcagctactccaaggaggcg 215 |||| |||||||||||||||||| |||||||||||||||| Sbjct: 79 gaggagcgagagggtgaggtgcaactactccaaggaggcg 118
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 65.9 bits (33), Expect = 5e-08 Identities = 45/49 (91%) Strand = Plus / Minus Query: 84 atggccaccatcagcgccgccgcggcgaccaccgtcgtcgcccgtgccg 132 ||||||||| |||||||||||||||||||| ||||||| ||||| |||| Sbjct: 32702470 atggccaccgtcagcgccgccgcggcgacctccgtcgttgcccgcgccg 32702422 Score = 63.9 bits (32), Expect = 2e-07 Identities = 38/40 (95%) Strand = Plus / Minus Query: 176 gaggggcgagagggtgaggtgcagctactccaaggaggcg 215 |||| |||||||||||||||||| |||||||||||||||| Sbjct: 32702272 gaggagcgagagggtgaggtgcaactactccaaggaggcg 32702233
>dbj|AP003265.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0490D09 Length = 154430 Score = 65.9 bits (33), Expect = 5e-08 Identities = 45/49 (91%) Strand = Plus / Minus Query: 84 atggccaccatcagcgccgccgcggcgaccaccgtcgtcgcccgtgccg 132 ||||||||| |||||||||||||||||||| ||||||| ||||| |||| Sbjct: 65265 atggccaccgtcagcgccgccgcggcgacctccgtcgttgcccgcgccg 65217 Score = 63.9 bits (32), Expect = 2e-07 Identities = 38/40 (95%) Strand = Plus / Minus Query: 176 gaggggcgagagggtgaggtgcagctactccaaggaggcg 215 |||| |||||||||||||||||| |||||||||||||||| Sbjct: 65067 gaggagcgagagggtgaggtgcaactactccaaggaggcg 65028
>dbj|AK119225.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-100-H08, full insert sequence Length = 1475 Score = 65.9 bits (33), Expect = 5e-08 Identities = 45/49 (91%) Strand = Plus / Plus Query: 84 atggccaccatcagcgccgccgcggcgaccaccgtcgtcgcccgtgccg 132 ||||||||| |||||||||||||||||||| ||||||| ||||| |||| Sbjct: 925 atggccaccgtcagcgccgccgcggcgacctccgtcgttgcccgcgccg 973 Score = 63.9 bits (32), Expect = 2e-07 Identities = 38/40 (95%) Strand = Plus / Plus Query: 176 gaggggcgagagggtgaggtgcagctactccaaggaggcg 215 |||| |||||||||||||||||| |||||||||||||||| Sbjct: 1014 gaggagcgagagggtgaggtgcaactactccaaggaggcg 1053
>dbj|AK119161.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-036-D04, full insert sequence Length = 639 Score = 65.9 bits (33), Expect = 5e-08 Identities = 45/49 (91%) Strand = Plus / Plus Query: 84 atggccaccatcagcgccgccgcggcgaccaccgtcgtcgcccgtgccg 132 ||||||||| |||||||||||||||||||| ||||||| ||||| |||| Sbjct: 68 atggccaccgtcagcgccgccgcggcgacctccgtcgttgcccgcgccg 116 Score = 63.9 bits (32), Expect = 2e-07 Identities = 38/40 (95%) Strand = Plus / Plus Query: 176 gaggggcgagagggtgaggtgcagctactccaaggaggcg 215 |||| |||||||||||||||||| |||||||||||||||| Sbjct: 157 gaggagcgagagggtgaggtgcaactactccaaggaggcg 196
>dbj|AK060476.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-012-F04, full insert sequence Length = 522 Score = 65.9 bits (33), Expect = 5e-08 Identities = 45/49 (91%) Strand = Plus / Plus Query: 84 atggccaccatcagcgccgccgcggcgaccaccgtcgtcgcccgtgccg 132 ||||||||| |||||||||||||||||||| ||||||| ||||| |||| Sbjct: 72 atggccaccgtcagcgccgccgcggcgacctccgtcgttgcccgcgccg 120 Score = 63.9 bits (32), Expect = 2e-07 Identities = 38/40 (95%) Strand = Plus / Plus Query: 176 gaggggcgagagggtgaggtgcagctactccaaggaggcg 215 |||| |||||||||||||||||| |||||||||||||||| Sbjct: 161 gaggagcgagagggtgaggtgcaactactccaaggaggcg 200
>dbj|AK060438.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-011-D03, full insert sequence Length = 635 Score = 65.9 bits (33), Expect = 5e-08 Identities = 45/49 (91%) Strand = Plus / Plus Query: 84 atggccaccatcagcgccgccgcggcgaccaccgtcgtcgcccgtgccg 132 ||||||||| |||||||||||||||||||| ||||||| ||||| |||| Sbjct: 72 atggccaccgtcagcgccgccgcggcgacctccgtcgttgcccgcgccg 120 Score = 63.9 bits (32), Expect = 2e-07 Identities = 38/40 (95%) Strand = Plus / Plus Query: 176 gaggggcgagagggtgaggtgcagctactccaaggaggcg 215 |||| |||||||||||||||||| |||||||||||||||| Sbjct: 161 gaggagcgagagggtgaggtgcaactactccaaggaggcg 200
>ref|XM_475670.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 375 Score = 46.1 bits (23), Expect = 0.051 Identities = 29/31 (93%) Strand = Plus / Plus Query: 176 gaggggcgagagggtgaggtgcagctactcc 206 |||||| ||||||||||||||| |||||||| Sbjct: 81 gaggggtgagagggtgaggtgcggctactcc 111
>gb|AC130601.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0108E17, complete sequence Length = 139829 Score = 46.1 bits (23), Expect = 0.051 Identities = 29/31 (93%) Strand = Plus / Plus Query: 176 gaggggcgagagggtgaggtgcagctactcc 206 |||||| ||||||||||||||| |||||||| Sbjct: 62525 gaggggtgagagggtgaggtgcggctactcc 62555
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 46.1 bits (23), Expect = 0.051 Identities = 29/31 (93%) Strand = Plus / Plus Query: 176 gaggggcgagagggtgaggtgcagctactcc 206 |||||| ||||||||||||||| |||||||| Sbjct: 24993672 gaggggtgagagggtgaggtgcggctactcc 24993702 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 216 acccctgccgccgccgcccg 235 |||||||||||||||||||| Sbjct: 20052948 acccctgccgccgccgcccg 20052967
>dbj|AK066345.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013064H24, full insert sequence Length = 741 Score = 46.1 bits (23), Expect = 0.051 Identities = 29/31 (93%) Strand = Plus / Plus Query: 176 gaggggcgagagggtgaggtgcagctactcc 206 |||||| ||||||||||||||| |||||||| Sbjct: 165 gaggggtgagagggtgaggtgcggctactcc 195
>gb|AY549197.1| Streptomyces tubercidicus ferredoxin (fdEA), ferredoxin reductase (freEA), and cytochrome P450 monooxygenase CYP147C1 (cypEA) genes, complete cds Length = 6486 Score = 44.1 bits (22), Expect = 0.20 Identities = 22/22 (100%) Strand = Plus / Plus Query: 104 cgcggcgaccaccgtcgtcgcc 125 |||||||||||||||||||||| Sbjct: 6182 cgcggcgaccaccgtcgtcgcc 6203
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 44.1 bits (22), Expect = 0.20 Identities = 22/22 (100%) Strand = Plus / Plus Query: 15 ccaagcaagacccgagcaagcc 36 |||||||||||||||||||||| Sbjct: 4433902 ccaagcaagacccgagcaagcc 4433923 Score = 42.1 bits (21), Expect = 0.80 Identities = 21/21 (100%) Strand = Plus / Plus Query: 94 tcagcgccgccgcggcgacca 114 ||||||||||||||||||||| Sbjct: 3277676 tcagcgccgccgcggcgacca 3277696 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 97 gcgccgccgcggcgaccacc 116 |||||||||||||||||||| Sbjct: 3465947 gcgccgccgcggcgaccacc 3465928
>gb|AC147812.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0073K23 map near R10571S, complete sequence Length = 161073 Score = 42.1 bits (21), Expect = 0.80 Identities = 21/21 (100%) Strand = Plus / Plus Query: 97 gcgccgccgcggcgaccaccg 117 ||||||||||||||||||||| Sbjct: 63338 gcgccgccgcggcgaccaccg 63358
>gb|AC108223.5| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0019A16, complete sequence Length = 175425 Score = 42.1 bits (21), Expect = 0.80 Identities = 21/21 (100%) Strand = Plus / Minus Query: 40 ctctccagcaccagcagcggc 60 ||||||||||||||||||||| Sbjct: 115176 ctctccagcaccagcagcggc 115156
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome Length = 4892717 Score = 42.1 bits (21), Expect = 0.80 Identities = 30/33 (90%) Strand = Plus / Plus Query: 113 caccgtcgtcgcccgtgccgcgatcgccaggct 145 ||||||||||||| | |||||||||| |||||| Sbjct: 2294086 caccgtcgtcgccagcgccgcgatcggcaggct 2294118 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 126 cgtgccgcgatcgccaggct 145 |||||||||||||||||||| Sbjct: 1588068 cgtgccgcgatcgccaggct 1588049 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 223 ccgccgccgcccgtggcgcc 242 |||||||||||||||||||| Sbjct: 1107608 ccgccgccgcccgtggcgcc 1107589
>gb|AF512431.1| Saccharothrix mutabilis subsp. capreolus nonribosomal peptide synthetase gene cluster, partial sequence Length = 28890 Score = 42.1 bits (21), Expect = 0.80 Identities = 21/21 (100%) Strand = Plus / Minus Query: 43 tccagcaccagcagcggccgg 63 ||||||||||||||||||||| Sbjct: 24378 tccagcaccagcagcggccgg 24358
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome Length = 4967148 Score = 42.1 bits (21), Expect = 0.80 Identities = 21/21 (100%) Strand = Plus / Plus Query: 219 cctgccgccgccgcccgtggc 239 ||||||||||||||||||||| Sbjct: 3802830 cctgccgccgccgcccgtggc 3802850
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 42.1 bits (21), Expect = 0.80 Identities = 21/21 (100%) Strand = Plus / Minus Query: 40 ctctccagcaccagcagcggc 60 ||||||||||||||||||||| Sbjct: 19246388 ctctccagcaccagcagcggc 19246368 Score = 42.1 bits (21), Expect = 0.80 Identities = 21/21 (100%) Strand = Plus / Minus Query: 97 gcgccgccgcggcgaccaccg 117 ||||||||||||||||||||| Sbjct: 3350956 gcgccgccgcggcgaccaccg 3350936 Score = 40.1 bits (20), Expect = 3.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 88 ccaccatcagcgccgccgcggcga 111 |||||| ||||||||||||||||| Sbjct: 14977085 ccaccaccagcgccgccgcggcga 14977062
>dbj|AK107512.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-129-E12, full insert sequence Length = 1901 Score = 42.1 bits (21), Expect = 0.80 Identities = 21/21 (100%) Strand = Plus / Plus Query: 97 gcgccgccgcggcgaccaccg 117 ||||||||||||||||||||| Sbjct: 331 gcgccgccgcggcgaccaccg 351
>gb|AF076784.1|AF076784 Oryctolagus cuniculus serum amyloid A-activating factor SAF-1 mRNA, complete cds Length = 2535 Score = 42.1 bits (21), Expect = 0.80 Identities = 27/29 (93%) Strand = Plus / Plus Query: 98 cgccgccgcggcgaccaccgtcgtcgccc 126 |||||||||||| ||| |||||||||||| Sbjct: 487 cgccgccgcggccaccgccgtcgtcgccc 515
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 42.1 bits (21), Expect = 0.80 Identities = 21/21 (100%) Strand = Plus / Minus Query: 40 ctctccagcaccagcagcggc 60 ||||||||||||||||||||| Sbjct: 19405937 ctctccagcaccagcagcggc 19405917 Score = 42.1 bits (21), Expect = 0.80 Identities = 21/21 (100%) Strand = Plus / Minus Query: 97 gcgccgccgcggcgaccaccg 117 ||||||||||||||||||||| Sbjct: 3359661 gcgccgccgcggcgaccaccg 3359641 Score = 40.1 bits (20), Expect = 3.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 88 ccaccatcagcgccgccgcggcga 111 |||||| ||||||||||||||||| Sbjct: 15058780 ccaccaccagcgccgccgcggcga 15058757
>gb|AY754866.1| Zea mays INDETERMINATE-related protein 9 mRNA, complete cds Length = 2383 Score = 40.1 bits (20), Expect = 3.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 220 ctgccgccgccgcccgtggcgccg 243 |||||||||||| ||||||||||| Sbjct: 903 ctgccgccgccggccgtggcgccg 880
>gb|AC167665.2| Culex pipiens quinquefasciatus, clone Culex pipiens quinquefasciatus-3940135D9, complete sequence Length = 93659 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 88 ccaccatcagcgccgccgcg 107 |||||||||||||||||||| Sbjct: 45575 ccaccatcagcgccgccgcg 45556
>ref|NM_196817.1| Oryza sativa (japonica cultivar-group) unknown protein (OSJNBa0018F16.3), mRNA Length = 2157 Score = 40.1 bits (20), Expect = 3.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 98 cgccgccgcggcgaccaccgtcgtcgcc 125 ||||||||||| | |||||||||||||| Sbjct: 324 cgccgccgcggaggccaccgtcgtcgcc 351
>ref|NM_195907.1| Oryza sativa (japonica cultivar-group) putative vacuolar sorting receptor protein (OSJNBb0078C13.14), mRNA Length = 1932 Score = 40.1 bits (20), Expect = 3.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 88 ccaccatcagcgccgccgcggcga 111 ||||||||| |||||||||||||| Sbjct: 73 ccaccatcaccgccgccgcggcga 50
>ref|NM_186617.2| Oryza sativa (japonica cultivar-group), mRNA Length = 2691 Score = 40.1 bits (20), Expect = 3.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 206 caaggaggcgacccctgccgccgccgcc 233 ||||||||||||| | |||||||||||| Sbjct: 658 caaggaggcgaccgccgccgccgccgcc 685
>gb|AC130607.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0017D10, complete sequence Length = 149870 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 216 acccctgccgccgccgcccg 235 |||||||||||||||||||| Sbjct: 51273 acccctgccgccgccgcccg 51292
>ref|XM_881821.1| PREDICTED: Bos taurus similar to Y4C6B.5, transcript variant 2 (LOC511097), mRNA Length = 3516 Score = 40.1 bits (20), Expect = 3.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 44 ccagcaccagcagcggccggcggc 67 |||||||||||||||| ||||||| Sbjct: 358 ccagcaccagcagcgggcggcggc 335
>ref|XM_588367.2| PREDICTED: Bos taurus similar to Y4C6B.5, transcript variant 1 (LOC511097), mRNA Length = 1797 Score = 40.1 bits (20), Expect = 3.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 44 ccagcaccagcagcggccggcggc 67 |||||||||||||||| ||||||| Sbjct: 358 ccagcaccagcagcgggcggcggc 335
>gb|CP000359.1| Deinococcus geothermalis DSM 11300, complete genome Length = 2467205 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 166 agctgaggacgaggggcgag 185 |||||||||||||||||||| Sbjct: 1683389 agctgaggacgaggggcgag 1683370
>gb|AC135864.5| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0071K13, complete sequence Length = 176150 Score = 40.1 bits (20), Expect = 3.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 88 ccaccatcagcgccgccgcggcga 111 |||||| ||||||||||||||||| Sbjct: 86872 ccaccaccagcgccgccgcggcga 86849
>gb|AY639949.1| Comamonas sp. JS46 mnb locus, partial sequence Length = 9155 Score = 40.1 bits (20), Expect = 3.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 221 tgccgccgccgcccgtggcgccgg 244 |||||||| ||||||||||||||| Sbjct: 4752 tgccgccggcgcccgtggcgccgg 4729
>gb|AC117252.3| Mus musculus BAC clone RP24-381C17 from chromosome 6, complete sequence Length = 129945 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 138 gccaggctgcaggccccagg 157 |||||||||||||||||||| Sbjct: 126221 gccaggctgcaggccccagg 126240
>gb|CP000316.1| Polaromonas sp. JS666, complete genome Length = 5200264 Score = 40.1 bits (20), Expect = 3.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 129 gccgcgatcgccaggctgcaggcc 152 ||||| |||||||||||||||||| Sbjct: 658250 gccgcaatcgccaggctgcaggcc 658227
>gb|CP000271.1| Burkholderia xenovorans LB400 chromosome 2, complete sequence Length = 3363523 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 88 ccaccatcagcgccgccgcg 107 |||||||||||||||||||| Sbjct: 308125 ccaccatcagcgccgccgcg 308106
>emb|Z98741.1|MLCB22 Mycobacterium leprae cosmid B22 Length = 40281 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 101 cgccgcggcgaccaccgtcg 120 |||||||||||||||||||| Sbjct: 24036 cgccgcggcgaccaccgtcg 24055
>gb|CP000088.1| Thermobifida fusca YX, complete genome Length = 3642249 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 112 ccaccgtcgtcgcccgtgcc 131 |||||||||||||||||||| Sbjct: 1975471 ccaccgtcgtcgcccgtgcc 1975490
>gb|AC091666.4| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBb0078C13, complete sequence Length = 140553 Score = 40.1 bits (20), Expect = 3.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 88 ccaccatcagcgccgccgcggcga 111 ||||||||| |||||||||||||| Sbjct: 130885 ccaccatcaccgccgccgcggcga 130862
>emb|AL939128.1|SCO939128 Streptomyces coelicolor A3(2) complete genome; segment 25/29 Length = 296500 Score = 40.1 bits (20), Expect = 3.1 Identities = 26/28 (92%) Strand = Plus / Minus Query: 216 acccctgccgccgccgcccgtggcgccg 243 ||||||||||||||| |||||| ||||| Sbjct: 22843 acccctgccgccgccccccgtgccgccg 22816
>emb|AL583920.1|MLEPRTN4 Mycobacterium leprae strain TN complete genome; segment 4/10 Length = 348450 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 101 cgccgcggcgaccaccgtcg 120 |||||||||||||||||||| Sbjct: 11386 cgccgcggcgaccaccgtcg 11367
>emb|BX511117.4| Mouse DNA sequence from clone RP23-143C1 on chromosome 11 Contains a basic transcription factor 3 (Btf3) pseudogene, complete sequence Length = 72981 Score = 40.1 bits (20), Expect = 3.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 29 agcaagccacactctccagcacca 52 |||||||||||||||||| ||||| Sbjct: 51098 agcaagccacactctccatcacca 51075
>dbj|BA000038.2| Vibrio vulnificus YJ016 DNA, chromosome II, complete sequence Length = 1857073 Score = 40.1 bits (20), Expect = 3.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 177 aggggcgagagggtgaggtgcagc 200 |||||| ||||||||||||||||| Sbjct: 1542484 aggggctagagggtgaggtgcagc 1542461
>gb|AE005918.1| Caulobacter crescentus CB15 section 244 of 359 of the complete genome Length = 14873 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 88 ccaccatcagcgccgccgcg 107 |||||||||||||||||||| Sbjct: 4917 ccaccatcagcgccgccgcg 4936
>gb|AC025905.3| Oryza sativa (japonica cultivar-group) chromosome 10 clone nbxb0018F16, complete sequence Length = 179157 Score = 40.1 bits (20), Expect = 3.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 98 cgccgccgcggcgaccaccgtcgtcgcc 125 ||||||||||| | |||||||||||||| Sbjct: 40730 cgccgccgcggaggccaccgtcgtcgcc 40757
>dbj|AP008231.1| Synechococcus elongatus PCC 6301 DNA, complete genome Length = 2696255 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 217 cccctgccgccgccgcccgt 236 |||||||||||||||||||| Sbjct: 1640260 cccctgccgccgccgcccgt 1640241
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 94 tcagcgccgccgcggcgacc 113 |||||||||||||||||||| Sbjct: 3137251 tcagcgccgccgcggcgacc 3137270
>gb|AC079634.3|AC079634 Genomic Sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0045C13, from Chromosome 10, complete sequence Length = 161250 Score = 40.1 bits (20), Expect = 3.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 88 ccaccatcagcgccgccgcggcga 111 ||||||||| |||||||||||||| Sbjct: 135549 ccaccatcaccgccgccgcggcga 135572
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 40.1 bits (20), Expect = 3.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 98 cgccgccgcggcgaccaccgtcgtcgcc 125 ||||||||||| | |||||||||||||| Sbjct: 16161841 cgccgccgcggaggccaccgtcgtcgcc 16161868 Score = 40.1 bits (20), Expect = 3.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 88 ccaccatcagcgccgccgcggcga 111 ||||||||| |||||||||||||| Sbjct: 9903070 ccaccatcaccgccgccgcggcga 9903093
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 91 ccatcagcgccgccgcggcg 110 |||||||||||||||||||| Sbjct: 13704950 ccatcagcgccgccgcggcg 13704931
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 3.1 Identities = 26/28 (92%) Strand = Plus / Minus Query: 206 caaggaggcgacccctgccgccgccgcc 233 ||||||||||||| | |||||||||||| Sbjct: 6785292 caaggaggcgaccgccgccgccgccgcc 6785265
>gb|AC155649.4| Mus musculus 6 BAC RP24-234M19 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 152831 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 138 gccaggctgcaggccccagg 157 |||||||||||||||||||| Sbjct: 104779 gccaggctgcaggccccagg 104760
>dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome Length = 4659019 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 175 cgaggggcgagagggtgagg 194 |||||||||||||||||||| Sbjct: 83786 cgaggggcgagagggtgagg 83805
>dbj|AP005197.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0592C06 Length = 160071 Score = 40.1 bits (20), Expect = 3.1 Identities = 26/28 (92%) Strand = Plus / Minus Query: 206 caaggaggcgacccctgccgccgccgcc 233 ||||||||||||| | |||||||||||| Sbjct: 79426 caaggaggcgaccgccgccgccgccgcc 79399
>dbj|AP005904.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:B1040D06 Length = 155034 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 91 ccatcagcgccgccgcggcg 110 |||||||||||||||||||| Sbjct: 103064 ccatcagcgccgccgcggcg 103045
>ref|XM_319930.2| Anopheles gambiae str. PEST ENSANGP00000016732 (ENSANGG00000014243), partial mRNA Length = 3498 Score = 40.1 bits (20), Expect = 3.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 217 cccctgccgccgccgcccgtggcgccgg 244 ||||||||||| ||||||||| |||||| Sbjct: 2932 cccctgccgccaccgcccgtgccgccgg 2959
>dbj|AK107502.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-129-E02, full insert sequence Length = 2691 Score = 40.1 bits (20), Expect = 3.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 206 caaggaggcgacccctgccgccgccgcc 233 ||||||||||||| | |||||||||||| Sbjct: 658 caaggaggcgaccgccgccgccgccgcc 685
>dbj|AK101916.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033071I02, full insert sequence Length = 2290 Score = 40.1 bits (20), Expect = 3.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 98 cgccgccgcggcgaccaccgtcgtcgcc 125 ||||||||||| | |||||||||||||| Sbjct: 427 cgccgccgcggaggccaccgtcgtcgcc 454
>dbj|AK102067.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033082F19, full insert sequence Length = 2230 Score = 40.1 bits (20), Expect = 3.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 98 cgccgccgcggcgaccaccgtcgtcgcc 125 ||||||||||| | |||||||||||||| Sbjct: 367 cgccgccgcggaggccaccgtcgtcgcc 394
>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence Length = 5888780 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 221 tgccgccgccgcccgtggcg 240 |||||||||||||||||||| Sbjct: 1186842 tgccgccgccgcccgtggcg 1186823
>emb|AL646053.1| Ralstonia solanacearum GMI1000 megaplasmid complete sequence Length = 2094509 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 86 ggccaccatcagcgccgccg 105 |||||||||||||||||||| Sbjct: 2021385 ggccaccatcagcgccgccg 2021404
>gb|BT023966.1| Zea mays clone EL01N0404H03 mRNA sequence Length = 1926 Score = 40.1 bits (20), Expect = 3.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 220 ctgccgccgccgcccgtggcgccg 243 |||||||||||| ||||||||||| Sbjct: 495 ctgccgccgccggccgtggcgccg 472
>dbj|AK061020.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-204-C09, full insert sequence Length = 1497 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 216 acccctgccgccgccgcccg 235 |||||||||||||||||||| Sbjct: 1035 acccctgccgccgccgcccg 1016
>dbj|AK058277.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-013-C06, full insert sequence Length = 1571 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 216 acccctgccgccgccgcccg 235 |||||||||||||||||||| Sbjct: 181 acccctgccgccgccgcccg 200
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence Length = 3809201 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 115 ccgtcgtcgcccgtgccgcg 134 |||||||||||||||||||| Sbjct: 2513621 ccgtcgtcgcccgtgccgcg 2513602
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 40.1 bits (20), Expect = 3.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 98 cgccgccgcggcgaccaccgtcgtcgcc 125 ||||||||||| | |||||||||||||| Sbjct: 16170082 cgccgccgcggaggccaccgtcgtcgcc 16170109 Score = 40.1 bits (20), Expect = 3.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 88 ccaccatcagcgccgccgcggcga 111 ||||||||| |||||||||||||| Sbjct: 9909109 ccaccatcaccgccgccgcggcga 9909132
>gb|CP000100.1| Synechococcus elongatus PCC 7942, complete genome Length = 2695903 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 217 cccctgccgccgccgcccgt 236 |||||||||||||||||||| Sbjct: 2676526 cccctgccgccgccgcccgt 2676545
>dbj|AP001099.5| Homo sapiens genomic DNA, chromosome 18 clone:RP11-883A18, complete sequence Length = 164343 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 33 agccacactctccagcacca 52 |||||||||||||||||||| Sbjct: 109361 agccacactctccagcacca 109342 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,592,656 Number of Sequences: 3902068 Number of extensions: 2592656 Number of successful extensions: 81113 Number of sequences better than 10.0: 70 Number of HSP's better than 10.0 without gapping: 75 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 78350 Number of HSP's gapped (non-prelim): 2762 length of query: 244 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 222 effective length of database: 17,147,199,772 effective search space: 3806678349384 effective search space used: 3806678349384 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
