ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet08h05 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY228552.1| Hordeum vulgare agmatine coumaroyltransferase (ACT) mRNA, complete cds Length = 1508 Score = 591 bits (298), Expect = e-166 Identities = 298/298 (100%) Strand = Plus / Plus Query: 13 ttcttcgtcgcgtggagccaggccacccgcggcgccgccatcgaccccgtcccggtgcac 72 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 494 ttcttcgtcgcgtggagccaggccacccgcggcgccgccatcgaccccgtcccggtgcac 553 Query: 73 gaccgtgcttccttcttccatccccgcgaaccgctgcacgtcgagtacgagcaccgtggc 132 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 554 gaccgtgcttccttcttccatccccgcgaaccgctgcacgtcgagtacgagcaccgtggc 613 Query: 133 gtcgagttcaagccctacgagaaggcacacgacgttgtctgtggtgcggacggcgacgag 192 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 614 gtcgagttcaagccctacgagaaggcacacgacgttgtctgtggtgcggacggcgacgag 673 Query: 193 gacgaggtggtggtgaacaaggtgcacttcagccgggagttcatctccaagctcaaggcg 252 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 674 gacgaggtggtggtgaacaaggtgcacttcagccgggagttcatctccaagctcaaggcg 733 Query: 253 caggcgtcggctggcgcgcccagaccctgcagcaccctgcagtgcgtggtggcacacc 310 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 734 caggcgtcggctggcgcgcccagaccctgcagcaccctgcagtgcgtggtggcacacc 791
>gb|AY234333.1| Triticum aestivum putative agmatine coumaroyltransferase mRNA, partial cds Length = 1220 Score = 480 bits (242), Expect = e-132 Identities = 284/298 (95%) Strand = Plus / Plus Query: 13 ttcttcgtcgcgtggagccaggccacccgcggcgccgccatcgaccccgtcccggtgcac 72 ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 229 ttcttcgtcgcctggagccaggccacccgcggtgccgccatcgaccccgtcccggtgcac 288 Query: 73 gaccgtgcttccttcttccatccccgcgaaccgctgcacgtcgagtacgagcaccgtggc 132 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 289 gaccgcgcttccttcttccatccccgcgaaccgctgcacgtcgagtacgagcaccgtggc 348 Query: 133 gtcgagttcaagccctacgagaaggcacacgacgttgtctgtggtgcggacggcgacgag 192 |||||||||||||||| |||||||| ||||||||||| |||||||| || |||||||| Sbjct: 349 gtcgagttcaagccctgcgagaaggtgcacgacgttgtatgtggtgctgatggcgacgac 408 Query: 193 gacgaggtggtggtgaacaaggtgcacttcagccgggagttcatctccaagctcaaggcg 252 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 409 gacgaggtggtggtgaacaaggtgcacttcagccgggagttcatctccaggctcaaggcg 468 Query: 253 caggcgtcggctggcgcgcccagaccctgcagcaccctgcagtgcgtggtggcacacc 310 ||||||||||||||||||||||| || |||||||||||||||||||||||||| |||| Sbjct: 469 caggcgtcggctggcgcgcccaggccgtgcagcaccctgcagtgcgtggtggcgcacc 526
>ref|XM_474243.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1293 Score = 143 bits (72), Expect = 4e-31 Identities = 114/128 (89%) Strand = Plus / Plus Query: 183 cggcgacgaggacgaggtggtggtgaacaaggtgcacttcagccgggagttcatctccaa 242 ||||||||| |||||||||||| | |||||||||||||| |||||||| |||||||| || Sbjct: 606 cggcgacgacgacgaggtggtgataaacaaggtgcacttgagccgggaattcatctcgaa 665 Query: 243 gctcaaggcgcaggcgtcggctggcgcgcccagaccctgcagcaccctgcagtgcgtggt 302 ||||||| ||||||||||||||||||||| | | || | |||||| |||||||||||||| Sbjct: 666 gctcaagtcgcaggcgtcggctggcgcgcaccggccgtacagcacgctgcagtgcgtggt 725 Query: 303 ggcacacc 310 ||| |||| Sbjct: 726 ggcgcacc 733 Score = 58.0 bits (29), Expect = 2e-05 Identities = 38/41 (92%) Strand = Plus / Plus Query: 112 gtcgagtacgagcaccgtggcgtcgagttcaagccctacga 152 ||||||| ||||||||||||||| ||||||||||| ||||| Sbjct: 532 gtcgagttcgagcaccgtggcgtggagttcaagccgtacga 572 Score = 50.1 bits (25), Expect = 0.004 Identities = 25/25 (100%) Strand = Plus / Plus Query: 26 ggagccaggccacccgcggcgccgc 50 ||||||||||||||||||||||||| Sbjct: 447 ggagccaggccacccgcggcgccgc 471
>emb|AL606646.3|OSJN00091 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0087O24, complete sequence Length = 146168 Score = 143 bits (72), Expect = 4e-31 Identities = 114/128 (89%) Strand = Plus / Plus Query: 183 cggcgacgaggacgaggtggtggtgaacaaggtgcacttcagccgggagttcatctccaa 242 ||||||||| |||||||||||| | |||||||||||||| |||||||| |||||||| || Sbjct: 10946 cggcgacgacgacgaggtggtgataaacaaggtgcacttgagccgggaattcatctcgaa 11005 Query: 243 gctcaaggcgcaggcgtcggctggcgcgcccagaccctgcagcaccctgcagtgcgtggt 302 ||||||| ||||||||||||||||||||| | | || | |||||| |||||||||||||| Sbjct: 11006 gctcaagtcgcaggcgtcggctggcgcgcaccggccgtacagcacgctgcagtgcgtggt 11065 Query: 303 ggcacacc 310 ||| |||| Sbjct: 11066 ggcgcacc 11073 Score = 115 bits (58), Expect = 9e-23 Identities = 73/78 (93%) Strand = Plus / Minus Query: 13 ttcttcgtcgcgtggagccaggccacccgcggcgccgccatcgaccccgtcccggtgcac 72 |||||| ||||||||||||||||||||||||||| ||||||| ||||||||||||||||| Sbjct: 14747 ttcttcctcgcgtggagccaggccacccgcggcgtcgccatccaccccgtcccggtgcac 14688 Query: 73 gaccgtgcttccttcttc 90 ||||| || ||||||||| Sbjct: 14687 gaccgcgcctccttcttc 14670 Score = 85.7 bits (43), Expect = 8e-14 Identities = 75/85 (88%), Gaps = 3/85 (3%) Strand = Plus / Minus Query: 182 acggcgacgaggacgaggtggtggtga---acaaggtgcacttcagccgggagttcatct 238 ||||| |||| | |||||||||||||| |||||||||||||||| |||||||||||| Sbjct: 14566 acggccacgacggcgaggtggtggtgacacacaaggtgcacttcagtagggagttcatct 14507 Query: 239 ccaagctcaaggcgcaggcgtcggc 263 ||||||||||||||| |||||||| Sbjct: 14506 ccaagctcaaggcgctcgcgtcggc 14482 Score = 58.0 bits (29), Expect = 2e-05 Identities = 38/41 (92%) Strand = Plus / Plus Query: 112 gtcgagtacgagcaccgtggcgtcgagttcaagccctacga 152 ||||||| ||||||||||||||| ||||||||||| ||||| Sbjct: 10872 gtcgagttcgagcaccgtggcgtggagttcaagccgtacga 10912 Score = 50.1 bits (25), Expect = 0.004 Identities = 28/29 (96%) Strand = Plus / Minus Query: 282 cagcaccctgcagtgcgtggtggcacacc 310 |||||||||||||||||||||||| |||| Sbjct: 14460 cagcaccctgcagtgcgtggtggcgcacc 14432 Score = 50.1 bits (25), Expect = 0.004 Identities = 25/25 (100%) Strand = Plus / Plus Query: 26 ggagccaggccacccgcggcgccgc 50 ||||||||||||||||||||||||| Sbjct: 10787 ggagccaggccacccgcggcgccgc 10811
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 143 bits (72), Expect = 4e-31 Identities = 114/128 (89%) Strand = Plus / Plus Query: 183 cggcgacgaggacgaggtggtggtgaacaaggtgcacttcagccgggagttcatctccaa 242 ||||||||| |||||||||||| | |||||||||||||| |||||||| |||||||| || Sbjct: 33960049 cggcgacgacgacgaggtggtgataaacaaggtgcacttgagccgggaattcatctcgaa 33960108 Query: 243 gctcaaggcgcaggcgtcggctggcgcgcccagaccctgcagcaccctgcagtgcgtggt 302 ||||||| ||||||||||||||||||||| | | || | |||||| |||||||||||||| Sbjct: 33960109 gctcaagtcgcaggcgtcggctggcgcgcaccggccgtacagcacgctgcagtgcgtggt 33960168 Query: 303 ggcacacc 310 ||| |||| Sbjct: 33960169 ggcgcacc 33960176 Score = 115 bits (58), Expect = 9e-23 Identities = 73/78 (93%) Strand = Plus / Minus Query: 13 ttcttcgtcgcgtggagccaggccacccgcggcgccgccatcgaccccgtcccggtgcac 72 |||||| ||||||||||||||||||||||||||| ||||||| ||||||||||||||||| Sbjct: 33963850 ttcttcctcgcgtggagccaggccacccgcggcgtcgccatccaccccgtcccggtgcac 33963791 Query: 73 gaccgtgcttccttcttc 90 ||||| || ||||||||| Sbjct: 33963790 gaccgcgcctccttcttc 33963773 Score = 85.7 bits (43), Expect = 8e-14 Identities = 75/85 (88%), Gaps = 3/85 (3%) Strand = Plus / Minus Query: 182 acggcgacgaggacgaggtggtggtga---acaaggtgcacttcagccgggagttcatct 238 ||||| |||| | |||||||||||||| |||||||||||||||| |||||||||||| Sbjct: 33963669 acggccacgacggcgaggtggtggtgacacacaaggtgcacttcagtagggagttcatct 33963610 Query: 239 ccaagctcaaggcgcaggcgtcggc 263 ||||||||||||||| |||||||| Sbjct: 33963609 ccaagctcaaggcgctcgcgtcggc 33963585 Score = 58.0 bits (29), Expect = 2e-05 Identities = 38/41 (92%) Strand = Plus / Plus Query: 112 gtcgagtacgagcaccgtggcgtcgagttcaagccctacga 152 ||||||| ||||||||||||||| ||||||||||| ||||| Sbjct: 33959975 gtcgagttcgagcaccgtggcgtggagttcaagccgtacga 33960015 Score = 50.1 bits (25), Expect = 0.004 Identities = 28/29 (96%) Strand = Plus / Minus Query: 282 cagcaccctgcagtgcgtggtggcacacc 310 |||||||||||||||||||||||| |||| Sbjct: 33963563 cagcaccctgcagtgcgtggtggcgcacc 33963535 Score = 50.1 bits (25), Expect = 0.004 Identities = 25/25 (100%) Strand = Plus / Plus Query: 26 ggagccaggccacccgcggcgccgc 50 ||||||||||||||||||||||||| Sbjct: 33959890 ggagccaggccacccgcggcgccgc 33959914
>dbj|AK109743.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-146-E07, full insert sequence Length = 1640 Score = 143 bits (72), Expect = 4e-31 Identities = 114/128 (89%) Strand = Plus / Plus Query: 183 cggcgacgaggacgaggtggtggtgaacaaggtgcacttcagccgggagttcatctccaa 242 ||||||||| |||||||||||| | |||||||||||||| |||||||| |||||||| || Sbjct: 760 cggcgacgacgacgaggtggtgataaacaaggtgcacttgagccgggaattcatctcgaa 819 Query: 243 gctcaaggcgcaggcgtcggctggcgcgcccagaccctgcagcaccctgcagtgcgtggt 302 ||||||| ||||||||||||||||||||| | | || | |||||| |||||||||||||| Sbjct: 820 gctcaagtcgcaggcgtcggctggcgcgcaccggccgtacagcacgctgcagtgcgtggt 879 Query: 303 ggcacacc 310 ||| |||| Sbjct: 880 ggcgcacc 887 Score = 103 bits (52), Expect = 3e-19 Identities = 118/140 (84%) Strand = Plus / Plus Query: 13 ttcttcgtcgcgtggagccaggccacccgcggcgccgccatcgaccccgtcccggtgcac 72 |||||| |||||||||||||||||||||||||||||||| || |||| ||||| |||||| Sbjct: 587 ttcttcctcgcgtggagccaggccacccgcggcgccgccttccaccctgtccccgtgcac 646 Query: 73 gaccgtgcttccttcttccatccccgcgaaccgctgcacgtcgagtacgagcaccgtggc 132 ||||| | ||||||||| || ||||| | | | ||||||| ||||||||||||| Sbjct: 647 gaccgcgtctccttcttcgcgccgcgcgacactcccaaggtcgagttcgagcaccgtggc 706 Query: 133 gtcgagttcaagccctacga 152 || ||||||||||| ||||| Sbjct: 707 gtggagttcaagccgtacga 726
>ref|XM_474244.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1350 Score = 115 bits (58), Expect = 9e-23 Identities = 73/78 (93%) Strand = Plus / Plus Query: 13 ttcttcgtcgcgtggagccaggccacccgcggcgccgccatcgaccccgtcccggtgcac 72 |||||| ||||||||||||||||||||||||||| ||||||| ||||||||||||||||| Sbjct: 490 ttcttcctcgcgtggagccaggccacccgcggcgtcgccatccaccccgtcccggtgcac 549 Query: 73 gaccgtgcttccttcttc 90 ||||| || ||||||||| Sbjct: 550 gaccgcgcctccttcttc 567 Score = 85.7 bits (43), Expect = 8e-14 Identities = 75/85 (88%), Gaps = 3/85 (3%) Strand = Plus / Plus Query: 182 acggcgacgaggacgaggtggtggtga---acaaggtgcacttcagccgggagttcatct 238 ||||| |||| | |||||||||||||| |||||||||||||||| |||||||||||| Sbjct: 671 acggccacgacggcgaggtggtggtgacacacaaggtgcacttcagtagggagttcatct 730 Query: 239 ccaagctcaaggcgcaggcgtcggc 263 ||||||||||||||| |||||||| Sbjct: 731 ccaagctcaaggcgctcgcgtcggc 755 Score = 50.1 bits (25), Expect = 0.004 Identities = 28/29 (96%) Strand = Plus / Plus Query: 282 cagcaccctgcagtgcgtggtggcacacc 310 |||||||||||||||||||||||| |||| Sbjct: 777 cagcaccctgcagtgcgtggtggcgcacc 805
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 46.1 bits (23), Expect = 0.066 Identities = 26/27 (96%) Strand = Plus / Plus Query: 29 gccaggccacccgcggcgccgccatcg 55 |||||||||||| |||||||||||||| Sbjct: 430734 gccaggccaccctcggcgccgccatcg 430760
>dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome Length = 4659019 Score = 44.1 bits (22), Expect = 0.26 Identities = 25/26 (96%) Strand = Plus / Minus Query: 31 caggccacccgcggcgccgccatcga 56 ||||||| |||||||||||||||||| Sbjct: 698783 caggccatccgcggcgccgccatcga 698758
>ref|XM_465240.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1890 Score = 42.1 bits (21), Expect = 1.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 180 ggacggcgacgaggacgaggtggtg 204 |||||||||||||||||| |||||| Sbjct: 981 ggacggcgacgaggacgacgtggtg 1005
>ref|XM_507475.1| PREDICTED Oryza sativa (japonica cultivar-group), P0572D06.2 mRNA Length = 2167 Score = 42.1 bits (21), Expect = 1.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 180 ggacggcgacgaggacgaggtggtg 204 |||||||||||||||||| |||||| Sbjct: 1219 ggacggcgacgaggacgacgtggtg 1243
>ref|XM_506788.2| PREDICTED Oryza sativa (japonica cultivar-group), P0572D06.2 mRNA Length = 2830 Score = 42.1 bits (21), Expect = 1.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 180 ggacggcgacgaggacgaggtggtg 204 |||||||||||||||||| |||||| Sbjct: 1433 ggacggcgacgaggacgacgtggtg 1457
>ref|XM_596207.2| PREDICTED: Bos taurus similar to myosin light chain kinase (LOC518025), mRNA Length = 1518 Score = 42.1 bits (21), Expect = 1.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 225 ccgggagttcatctccaagct 245 ||||||||||||||||||||| Sbjct: 1317 ccgggagttcatctccaagct 1337
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 42.1 bits (21), Expect = 1.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 180 ggacggcgacgaggacgaggtggtg 204 |||||||||||||||||| |||||| Sbjct: 12503801 ggacggcgacgaggacgacgtggtg 12503777
>dbj|AP004798.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0572D06 Length = 148920 Score = 42.1 bits (21), Expect = 1.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 180 ggacggcgacgaggacgaggtggtg 204 |||||||||||||||||| |||||| Sbjct: 8334 ggacggcgacgaggacgacgtggtg 8310
>dbj|AK107002.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-120-C10, full insert sequence Length = 2167 Score = 42.1 bits (21), Expect = 1.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 180 ggacggcgacgaggacgaggtggtg 204 |||||||||||||||||| |||||| Sbjct: 1219 ggacggcgacgaggacgacgtggtg 1243
>dbj|AK106848.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-118-A09, full insert sequence Length = 2830 Score = 42.1 bits (21), Expect = 1.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 180 ggacggcgacgaggacgaggtggtg 204 |||||||||||||||||| |||||| Sbjct: 1433 ggacggcgacgaggacgacgtggtg 1457
>dbj|AK102703.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033103O07, full insert sequence Length = 1890 Score = 42.1 bits (21), Expect = 1.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 180 ggacggcgacgaggacgaggtggtg 204 |||||||||||||||||| |||||| Sbjct: 981 ggacggcgacgaggacgacgtggtg 1005
>ref|NM_102471.3| Arabidopsis thaliana unknown protein AT1G27090 mRNA, complete cds Length = 1551 Score = 40.1 bits (20), Expect = 4.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 184 ggcgacgaggacgaggtggtggtg 207 ||||| |||||||||||||||||| Sbjct: 1231 ggcgaggaggacgaggtggtggtg 1254
>ref|NM_192143.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 339 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 237 ctccaagctcaaggcgcagg 256 |||||||||||||||||||| Sbjct: 207 ctccaagctcaaggcgcagg 226
>ref|NM_184874.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1041 Score = 40.1 bits (20), Expect = 4.1 Identities = 32/36 (88%) Strand = Plus / Plus Query: 181 gacggcgacgaggacgaggtggtggtgaacaaggtg 216 |||||||| ||||| |||| ||||||||||| |||| Sbjct: 697 gacggcgaggaggaggaggaggtggtgaacagggtg 732
>gb|AC079736.13| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0003G23, complete sequence Length = 135931 Score = 40.1 bits (20), Expect = 4.1 Identities = 32/36 (88%) Strand = Plus / Plus Query: 181 gacggcgacgaggacgaggtggtggtgaacaaggtg 216 |||||||| ||||| |||| ||||||||||| |||| Sbjct: 72959 gacggcgaggaggaggaggaggtggtgaacagggtg 72994
>ref|XM_583699.2| PREDICTED: Bos taurus CE5 protein-like (LOC507141), mRNA Length = 783 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 35 ccacccgcggcgccgccatc 54 |||||||||||||||||||| Sbjct: 59 ccacccgcggcgccgccatc 78
>gb|AC116450.17| Mus musculus chromosome 7, clone RP24-249O20, complete sequence Length = 142066 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 229 gagttcatctccaagctcaa 248 |||||||||||||||||||| Sbjct: 107332 gagttcatctccaagctcaa 107351
>gb|AY317642.1| Mus musculus olfactory receptor Olfr533 (Olfr533) gene, complete cds Length = 963 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 229 gagttcatctccaagctcaa 248 |||||||||||||||||||| Sbjct: 947 gagttcatctccaagctcaa 928
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 4.1 Identities = 32/36 (88%) Strand = Plus / Minus Query: 181 gacggcgacgaggacgaggtggtggtgaacaaggtg 216 |||||||| ||||| |||| ||||||||||| |||| Sbjct: 26761253 gacggcgaggaggaggaggaggtggtgaacagggtg 26761218
>gb|AC132344.3| Mus musculus BAC clone RP24-177A17 from chromosome 13, complete sequence Length = 169661 Score = 40.1 bits (20), Expect = 4.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 200 tggtggtgaacaaggtgcacttca 223 |||||||||||||||||| ||||| Sbjct: 39999 tggtggtgaacaaggtgctcttca 39976
>gb|AC124537.5| Mus musculus BAC clone RP23-333J6 from chromosome 13, complete sequence Length = 186870 Score = 40.1 bits (20), Expect = 4.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 200 tggtggtgaacaaggtgcacttca 223 |||||||||||||||||| ||||| Sbjct: 185493 tggtggtgaacaaggtgctcttca 185470
>gb|AC117670.15| Mus musculus chromosome 7, clone RP23-383P11, complete sequence Length = 219661 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 229 gagttcatctccaagctcaa 248 |||||||||||||||||||| Sbjct: 161923 gagttcatctccaagctcaa 161904
>ref|NM_001001889.1| Danio rerio catenin, beta 2 (ctnnb2), mRNA Length = 3550 Score = 40.1 bits (20), Expect = 4.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 186 cgacgaggacgaggtggtggtgaa 209 |||||||||| ||||||||||||| Sbjct: 647 cgacgaggaccaggtggtggtgaa 670
>gb|AY091390.1| Arabidopsis thaliana unknown protein (At1g27090) mRNA, complete cds Length = 1294 Score = 40.1 bits (20), Expect = 4.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 184 ggcgacgaggacgaggtggtggtg 207 ||||| |||||||||||||||||| Sbjct: 1073 ggcgaggaggacgaggtggtggtg 1096
>gb|AY074367.1| Arabidopsis thaliana unknown protein (At1g27090) mRNA, complete cds Length = 1552 Score = 40.1 bits (20), Expect = 4.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 184 ggcgacgaggacgaggtggtggtg 207 ||||| |||||||||||||||||| Sbjct: 1231 ggcgaggaggacgaggtggtggtg 1254
>gb|AC151612.2| Emiliania huxleyi clone JGIACCU-13I1, complete sequence Length = 35427 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 180 ggacggcgacgaggacgagg 199 |||||||||||||||||||| Sbjct: 32903 ggacggcgacgaggacgagg 32884
>gb|AF329680.1| Danio rerio beta-catenin 2 mRNA, complete cds Length = 3550 Score = 40.1 bits (20), Expect = 4.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 186 cgacgaggacgaggtggtggtgaa 209 |||||||||| ||||||||||||| Sbjct: 647 cgacgaggaccaggtggtggtgaa 670
>gb|AE012420.1| Xanthomonas campestris pv. campestris str. ATCC 33913, section 328 of 460 of the complete genome Length = 13708 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 267 cgcgcccagaccctgcagca 286 |||||||||||||||||||| Sbjct: 7837 cgcgcccagaccctgcagca 7818
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome Length = 4967148 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 269 cgcccagaccctgcagcacc 288 |||||||||||||||||||| Sbjct: 4462729 cgcccagaccctgcagcacc 4462748
>gb|BC056276.1| Danio rerio catenin, beta 2, mRNA (cDNA clone MGC:65770 IMAGE:6789078), complete cds Length = 3600 Score = 40.1 bits (20), Expect = 4.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 186 cgacgaggacgaggtggtggtgaa 209 |||||||||| ||||||||||||| Sbjct: 644 cgacgaggaccaggtggtggtgaa 667
>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome Length = 4352825 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 189 cgaggacgaggtggtggtga 208 |||||||||||||||||||| Sbjct: 3716953 cgaggacgaggtggtggtga 3716972
>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome Length = 5148708 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 267 cgcgcccagaccctgcagca 286 |||||||||||||||||||| Sbjct: 1329195 cgcgcccagaccctgcagca 1329214
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 4.1 Identities = 32/36 (88%) Strand = Plus / Minus Query: 181 gacggcgacgaggacgaggtggtggtgaacaaggtg 216 |||||||| ||||| |||| ||||||||||| |||| Sbjct: 26852576 gacggcgaggaggaggaggaggtggtgaacagggtg 26852541
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 237 ctccaagctcaaggcgcagg 256 |||||||||||||||||||| Sbjct: 28532373 ctccaagctcaaggcgcagg 28532354
>ref|NM_001011815.1| Mus musculus olfactory receptor 533 (Olfr533), mRNA Length = 963 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 229 gagttcatctccaagctcaa 248 |||||||||||||||||||| Sbjct: 947 gagttcatctccaagctcaa 928
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 178 gcggacggcgacgaggacga 197 |||||||||||||||||||| Sbjct: 5632372 gcggacggcgacgaggacga 5632391
>gb|AC000348.2|AC000348 Genomic sequence for Arabidopsis thaliana BAC T7N9 from chromosome I, complete sequence Length = 111566 Score = 40.1 bits (20), Expect = 4.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 184 ggcgacgaggacgaggtggtggtg 207 ||||| |||||||||||||||||| Sbjct: 45865 ggcgaggaggacgaggtggtggtg 45842
>gb|CP000252.1| Syntrophus aciditrophicus SB, complete genome Length = 3179300 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 36 cacccgcggcgccgccatcg 55 |||||||||||||||||||| Sbjct: 2988002 cacccgcggcgccgccatcg 2988021
>dbj|AP003450.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0034C09 Length = 170226 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 237 ctccaagctcaaggcgcagg 256 |||||||||||||||||||| Sbjct: 58812 ctccaagctcaaggcgcagg 58793
>dbj|AK111438.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-183-A04, full insert sequence Length = 1587 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 237 ctccaagctcaaggcgcagg 256 |||||||||||||||||||| Sbjct: 1002 ctccaagctcaaggcgcagg 983
>dbj|AK064665.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-115-B07, full insert sequence Length = 1424 Score = 40.1 bits (20), Expect = 4.1 Identities = 32/36 (88%) Strand = Plus / Plus Query: 181 gacggcgacgaggacgaggtggtggtgaacaaggtg 216 |||||||| ||||| |||| ||||||||||| |||| Sbjct: 666 gacggcgaggaggaggaggaggtggtgaacagggtg 701
>gb|AF081810.1|AF081810 Lymantria dispar nucleopolyhedrovirus, complete genome Length = 161046 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 180 ggacggcgacgaggacgagg 199 |||||||||||||||||||| Sbjct: 56855 ggacggcgacgaggacgagg 56836
>gb|AE000782.1| Archaeoglobus fulgidus DSM 4304, complete genome Length = 2178400 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 138 gttcaagccctacgagaagg 157 |||||||||||||||||||| Sbjct: 876310 gttcaagccctacgagaagg 876329
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 40.1 bits (20), Expect = 4.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 240 caagctcaaggcgcaggcgtcggc 263 ||||||||||| |||||||||||| Sbjct: 249842 caagctcaaggagcaggcgtcggc 249819
>gb|U79644.1|LDU79644 Lymantria dispar nucleopolyhedrovirus, isolate 163-2, 25K FP fusion protein gene, complete cds Length = 650 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 180 ggacggcgacgaggacgagg 199 |||||||||||||||||||| Sbjct: 65 ggacggcgacgaggacgagg 46 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,241,454 Number of Sequences: 3902068 Number of extensions: 2241454 Number of successful extensions: 63850 Number of sequences better than 10.0: 52 Number of HSP's better than 10.0 without gapping: 52 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 62994 Number of HSP's gapped (non-prelim): 853 length of query: 310 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 288 effective length of database: 17,147,199,772 effective search space: 4938393534336 effective search space used: 4938393534336 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
