ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet08h04 |
|---|---|
| Clone Library Name | barley_pub |
>HCBT1_DIACA (O24645) Anthranilate N-benzoyltransferase protein 1 (EC 2.3.1.144)| (Anthranilate N-hydroxycinnamoyl/benzoyltransferase 1) Length = 445 Score = 53.5 bits (127), Expect = 1e-07 Identities = 35/114 (30%), Positives = 58/114 (50%), Gaps = 3/114 (2%) Frame = +1 Query: 10 EFFVAWSQATRGAAIDPVPVHDRASFFHPREPLHVEYEHRGVEFKPYEKA--HDVVCGAD 183 EF +W++ +G PVHDR PR P ++Y H +F+P+ + ++++ G Sbjct: 174 EFNNSWARIAKGLLPALEPVHDRYLHLRPRNPPQIKYSHS--QFEPFVPSLPNELLDGKT 231 Query: 184 GDEDEVVVNKVHFSREFISKLKAQAS-AGAPRPCSTLQCVVAHLWRSMTMARGL 342 + + SRE I+ LK + + ST + V AH+WRS++ ARGL Sbjct: 232 NKSQTLFI----LSREQINTLKQKLDLSNNTTRLSTYEVVAAHVWRSVSKARGL 281
>HCBT3_DIACA (O23918) Anthranilate N-benzoyltransferase protein 3 (EC 2.3.1.144)| (Anthranilate N-hydroxycinnamoyl/benzoyltransferase 3) Length = 445 Score = 48.9 bits (115), Expect = 3e-06 Identities = 34/114 (29%), Positives = 55/114 (48%), Gaps = 3/114 (2%) Frame = +1 Query: 10 EFFVAWSQATRGAAIDPVPVHDRASFFHPREPLHVEYEHRGVEFKPYEKA--HDVVCGAD 183 EF +W++ +G PVHDR PR P ++Y H +F+P+ + +++ G Sbjct: 174 EFNNSWARIAKGLLPALEPVHDRYLHLCPRNPPQIKYTHS--QFEPFVPSLPKELLDGKT 231 Query: 184 GDEDEVVVNKVHFSREFISKLKAQAS-AGAPRPCSTLQCVVAHLWRSMTMARGL 342 + SRE I+ LK + + ST + V H+WRS++ ARGL Sbjct: 232 SKSQTL----FKLSREQINTLKQKLDWSNTTTRLSTYEVVAGHVWRSVSKARGL 281
>HCBT2_DIACA (O23917) Anthranilate N-benzoyltransferase protein 2 (EC 2.3.1.144)| (Anthranilate N-hydroxycinnamoyl/benzoyltransferase 2) Length = 446 Score = 48.1 bits (113), Expect = 5e-06 Identities = 34/115 (29%), Positives = 56/115 (48%), Gaps = 4/115 (3%) Frame = +1 Query: 10 EFFVAWSQATRGAAIDPVPVHDRASFFHPREPLHVEYEHRGVEFKPYEKA--HDVVCGAD 183 EF +W++ +G PVHDR R P ++Y H +F+P+ + ++++ G Sbjct: 174 EFNNSWARIAKGLLPALEPVHDRYLHLRLRNPPQIKYTHS--QFEPFVPSLPNELLDGKT 231 Query: 184 GDEDEVVVNKVHFSREFISKLKAQA--SAGAPRPCSTLQCVVAHLWRSMTMARGL 342 + SRE I+ LK + S+ ST + V H+WRS++ ARGL Sbjct: 232 NKSQTLF----KLSREQINTLKQKLDLSSNTTTRLSTYEVVAGHVWRSVSKARGL 282
>ADA28_HUMAN (Q9UKQ2) ADAM 28 precursor (EC 3.4.24.-) (A disintegrin and| metalloproteinase domain 28) (Metalloproteinase-like, disintegrin-like, and cysteine-rich protein-L) (MDC-L) (eMDC II) (ADAM23) Length = 775 Score = 32.7 bits (73), Expect = 0.23 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%) Frame = +1 Query: 73 DRASFFHPREPLHVE-YEHRGVEFKPYEKAHDVVCGADG 186 D+ F P P+H + EH ++ P EK +D CG DG Sbjct: 135 DQRYFIEPLSPIHRDGQEHALFKYNPDEKNYDSTCGMDG 173
>ADA28_MACFA (Q9XSL6) ADAM 28 precursor (EC 3.4.24.-) (A disintegrin and| metalloproteinase domain 28) (eMDC II) Length = 776 Score = 31.6 bits (70), Expect = 0.51 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%) Frame = +1 Query: 85 FFHPREPLHVE-YEHRGVEFKPYEKAHDVVCGADG 186 F P P+H + EH ++ P EK +D CG DG Sbjct: 140 FIEPLSPIHRDGQEHALFKYDPEEKNYDSTCGTDG 174
>ORC1_MOUSE (Q9Z1N2) Origin recognition complex subunit 1| Length = 840 Score = 29.3 bits (64), Expect = 2.5 Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 5/69 (7%) Frame = +1 Query: 97 REPLHVEYEHRGVEFKPYEKAHDVVCGADGD-----EDEVVVNKVHFSREFISKLKAQAS 261 +EP+ HR ++ +C DGD E+E V ++ EFIS L + S Sbjct: 364 KEPIRTSRVHRKSSLLTLKRIRQQLCLLDGDDRDQEEEESVDSESEEEDEFISSLPTRNS 423 Query: 262 AGAPRPCST 288 G R T Sbjct: 424 LGQSRTRQT 432
>SYE_PYRKO (Q5JH16) Glutamyl-tRNA synthetase (EC 6.1.1.17) (Glutamate--tRNA| ligase) (GluRS) Length = 573 Score = 28.5 bits (62), Expect = 4.3 Identities = 21/63 (33%), Positives = 27/63 (42%), Gaps = 1/63 (1%) Frame = +1 Query: 7 REFFVAWSQATRGAAIDPVPVH-DRASFFHPREPLHVEYEHRGVEFKPYEKAHDVVCGAD 183 R FFVA DP+P++ + A F PLH +Y RGV +E V D Sbjct: 412 RYFFVA----------DPIPMYVEGAQEFTAEIPLHPDYPERGVRRLKFEPDKPVYVSKD 461 Query: 184 GDE 192 E Sbjct: 462 DME 464
>UNC5A_RAT (O08721) Netrin receptor UNC5A precursor (Unc-5 homolog A) (Unc-5| homolog 1) Length = 898 Score = 28.5 bits (62), Expect = 4.3 Identities = 12/20 (60%), Positives = 15/20 (75%), Gaps = 2/20 (10%) Frame = -3 Query: 119 YSTCSGS--RGWKKEARSCT 66 +S CS S RGW+K +RSCT Sbjct: 251 WSVCSASCGRGWQKRSRSCT 270
>UNC5A_MOUSE (Q8K1S4) Netrin receptor UNC5A precursor (Unc-5 homolog A) (Unc-5| homolog 1) Length = 898 Score = 28.5 bits (62), Expect = 4.3 Identities = 12/20 (60%), Positives = 15/20 (75%), Gaps = 2/20 (10%) Frame = -3 Query: 119 YSTCSGS--RGWKKEARSCT 66 +S CS S RGW+K +RSCT Sbjct: 251 WSVCSASCGRGWQKRSRSCT 270
>POLG_RHDVS (Q86117) Genome polyprotein (p254) [Contains: p16; p23; Helicase| (2C-like protein) (P2C); 3A-like protein; Viral genome-linked protein (VPg); Thiol protease P3C (EC 3.4.22.-); RNA-directed RNA polymerase (EC 2.7.7.48); Capsid protein VP60, sub Length = 2344 Score = 28.5 bits (62), Expect = 4.3 Identities = 22/83 (26%), Positives = 35/83 (42%), Gaps = 1/83 (1%) Frame = +1 Query: 73 DRASFFHPREPLHVEYEHRGVEFKPYEKAHDVVCG-ADGDEDEVVVNKVHFSREFISKLK 249 +R +F +P +Y+ + +K Y + V A D++ N+VH SR K++ Sbjct: 721 NRFNFVYP----DAQYDQALLMWKQYFVMYGCVARLAKNFVDDIPYNQVHISRASDPKIE 776 Query: 250 AQASAGAPRPCSTLQCVVAHLWR 318 C QC HLWR Sbjct: 777 G---------CVEYQCKFQHLWR 790
>POLG_RHDVB (Q89273) Genome polyprotein (p254) [Contains: p16; p23; Helicase| (2C-like protein) (P2C); 3A-like protein; Viral genome-linked protein (VPg); Thiol protease P3C (EC 3.4.22.-); RNA-directed RNA polymerase (EC 2.7.7.48); Capsid protein VP60, sub Length = 2344 Score = 28.5 bits (62), Expect = 4.3 Identities = 22/83 (26%), Positives = 35/83 (42%), Gaps = 1/83 (1%) Frame = +1 Query: 73 DRASFFHPREPLHVEYEHRGVEFKPYEKAHDVVCG-ADGDEDEVVVNKVHFSREFISKLK 249 +R +F +P +Y+ + +K Y + V A D++ N+VH SR K++ Sbjct: 721 NRFNFVYP----DAQYDQALLMWKQYFVMYGCVARLAKNFVDDIPYNQVHISRASDPKIE 776 Query: 250 AQASAGAPRPCSTLQCVVAHLWR 318 C QC HLWR Sbjct: 777 G---------CVEYQCKFQHLWR 790
>POLG_RHDVA (Q86119) Genome polyprotein (p254) [Contains: p16; p23; Helicase| (2C-like protein) (P2C); 3A-like protein; Viral genome-linked protein (VPg); Thiol protease P3C (EC 3.4.22.-); RNA-directed RNA polymerase (EC 2.7.7.48); Capsid protein VP60, sub Length = 2344 Score = 28.5 bits (62), Expect = 4.3 Identities = 22/83 (26%), Positives = 35/83 (42%), Gaps = 1/83 (1%) Frame = +1 Query: 73 DRASFFHPREPLHVEYEHRGVEFKPYEKAHDVVCG-ADGDEDEVVVNKVHFSREFISKLK 249 +R +F +P +Y+ + +K Y + V A D++ N+VH SR K++ Sbjct: 721 NRFNFVYP----DAQYDQALLMWKQYFVMYGCVARLAKNFVDDIPYNQVHISRASDPKIE 776 Query: 250 AQASAGAPRPCSTLQCVVAHLWR 318 C QC HLWR Sbjct: 777 G---------CVEYQCKFQHLWR 790
>YBX2A_XENLA (P21574) Y-box-binding protein 2-A (Cytoplasmic RNA-binding protein| p56) (mRNP4) Length = 336 Score = 28.5 bits (62), Expect = 4.3 Identities = 21/43 (48%), Positives = 24/43 (55%), Gaps = 1/43 (2%) Frame = +3 Query: 210 QGALQPGVHLQAQGAGVGWRAQTLQHPAVRGGTPV-AEHDDGA 335 QGA Q V AQG G +A+ QHPA GTP + DDGA Sbjct: 281 QGATQ--VAATAQGEG---KAEPTQHPASEEGTPSDSPTDDGA 318
>PO3F3_RAT (Q63262) POU domain, class 3, transcription factor 3| (Brain-specific homeobox/POU domain protein 1) (Brain-1) (Brn-1 protein) Length = 497 Score = 28.1 bits (61), Expect = 5.6 Identities = 16/27 (59%), Positives = 18/27 (66%), Gaps = 2/27 (7%) Frame = +3 Query: 249 GAGVGWRAQTLQHPA-VRGGTP-VAEH 323 G G G AQ+L HP VRG TP +AEH Sbjct: 243 GGGAGGGAQSLVHPGLVRGDTPELAEH 269
>ATG7_MOUSE (Q9D906) Autophagy-related protein 7 (APG7-like)| (Ubiquitin-activating enzyme E1-like protein) (mAGP7) Length = 698 Score = 28.1 bits (61), Expect = 5.6 Identities = 17/77 (22%), Positives = 34/77 (44%), Gaps = 11/77 (14%) Frame = +1 Query: 97 REPLHVEYEHRGVEFKPYEKAHDVVCGADG-----------DEDEVVVNKVHFSREFISK 243 R P+ ++ + + E A+D +C A+G D+D V+V+ + +F Sbjct: 159 RGPVSLDQRLSPKQIQALEHAYDDLCRAEGVTALPYFLFKYDDDTVLVSLLKHYSDFFQG 218 Query: 244 LKAQASAGAPRPCSTLQ 294 + + + G PC+ Q Sbjct: 219 QRTKITVGVYDPCNLAQ 235
>PO3F3_MOUSE (P31361) POU domain, class 3, transcription factor 3| (Brain-specific homeobox/POU domain protein 1) (Brain-1) (Brn-1 protein) Length = 495 Score = 28.1 bits (61), Expect = 5.6 Identities = 16/27 (59%), Positives = 18/27 (66%), Gaps = 2/27 (7%) Frame = +3 Query: 249 GAGVGWRAQTLQHPA-VRGGTP-VAEH 323 G G G AQ+L HP VRG TP +AEH Sbjct: 241 GGGAGGGAQSLVHPGLVRGDTPELAEH 267
>PO3F3_HUMAN (P20264) POU domain, class 3, transcription factor 3| (Brain-specific homeobox/POU domain protein 1) (Brain-1) (Brn-1 protein) Length = 500 Score = 28.1 bits (61), Expect = 5.6 Identities = 16/27 (59%), Positives = 18/27 (66%), Gaps = 2/27 (7%) Frame = +3 Query: 249 GAGVGWRAQTLQHPA-VRGGTP-VAEH 323 G G G AQ+L HP VRG TP +AEH Sbjct: 244 GGGAGGGAQSLVHPGLVRGDTPELAEH 270
>POLG_RHDVF (P27410) Genome polyprotein (p254) [Contains: p16; p23; Helicase| (2C-like protein) (P2C); 3A-like protein; Viral genome-linked protein (VPg); Thiol protease P3C (EC 3.4.22.-); RNA-directed RNA polymerase (EC 2.7.7.48); Capsid protein VP60, sub Length = 2344 Score = 27.7 bits (60), Expect = 7.3 Identities = 14/42 (33%), Positives = 19/42 (45%) Frame = +1 Query: 193 DEVVVNKVHFSREFISKLKAQASAGAPRPCSTLQCVVAHLWR 318 D++ N+VH SR K++ C QC HLWR Sbjct: 758 DDIPYNQVHISRASDPKIEG---------CVEYQCKFQHLWR 790
>POLG_RHDV3 (P27411) Genome polyprotein (p254) [Contains: p16; p23; Helicase| (2C-like protein) (P2C); 3A-like protein; Viral genome-linked protein (VPg); Thiol protease P3C (EC 3.4.22.-); RNA-directed RNA polymerase (EC 2.7.7.48); Capsid protein VP60, sub Length = 2344 Score = 27.7 bits (60), Expect = 7.3 Identities = 14/42 (33%), Positives = 19/42 (45%) Frame = +1 Query: 193 DEVVVNKVHFSREFISKLKAQASAGAPRPCSTLQCVVAHLWR 318 D++ N+VH SR K++ C QC HLWR Sbjct: 758 DDIPYNQVHISRASDPKIEG---------CVEYQCKFQHLWR 790
>SYFB_STRCO (O88054) Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)| (Phenylalanine--tRNA ligase beta chain) (PheRS) Length = 840 Score = 27.7 bits (60), Expect = 7.3 Identities = 11/23 (47%), Positives = 17/23 (73%) Frame = -3 Query: 296 HCRVLQGLGAPADACALSLEMNS 228 H RVL+ LG PA CA+ L++++ Sbjct: 708 HPRVLKTLGLPARTCAMELDLDA 730
>ARGD_METKA (Q8TUZ5) Acetylornithine aminotransferase (EC 2.6.1.11) (ACOAT)| Length = 389 Score = 27.3 bits (59), Expect = 9.6 Identities = 19/67 (28%), Positives = 27/67 (40%) Frame = +1 Query: 16 FVAWSQATRGAAIDPVPVHDRASFFHPREPLHVEYEHRGVEFKPYEKAHDVVCGADGDED 195 F+A+ G + + + F P EPL E+EH PY + V D D Sbjct: 124 FIAFEGGFHGRTMGALSATWKPEFREPFEPLVPEFEH-----VPYGDVNAVEKAIDDDTA 178 Query: 196 EVVVNKV 216 V+V V Sbjct: 179 AVIVEPV 185
>CVMT1_OCIBA (Q93WU3) Chavicol O-methyltransferase (EC 2.1.1.146) ((Iso)eugenol| O-methyltransferase CVOMT1) (S-adenosysl-L-methionine:(Iso)eugenol O-methyltransferase CVOMT1) Length = 356 Score = 27.3 bits (59), Expect = 9.6 Identities = 12/31 (38%), Positives = 19/31 (61%) Frame = +1 Query: 163 DVVCGADGDEDEVVVNKVHFSREFISKLKAQ 255 DVV G + D DEV+ +++HF +S A+ Sbjct: 291 DVVVGVNHDVDEVLEDQLHFDMAMMSYFNAK 321
>NOB1_MOUSE (Q8BW10) RNA-binding protein NOB1| Length = 403 Score = 27.3 bits (59), Expect = 9.6 Identities = 15/47 (31%), Positives = 22/47 (46%) Frame = +1 Query: 55 DPVPVHDRASFFHPREPLHVEYEHRGVEFKPYEKAHDVVCGADGDED 195 +P +S HP LH+ H + KP ++A D ADG E+ Sbjct: 106 EPEKAKVSSSIQHPETALHISGFHLPSKSKPLQEAVDRGHAADGPEN 152 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 36,640,392 Number of Sequences: 219361 Number of extensions: 590992 Number of successful extensions: 2091 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 2036 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2087 length of database: 80,573,946 effective HSP length: 90 effective length of database: 60,831,456 effective search space used: 1459954944 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
