ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name baet08h01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_185174.1| Oryza sativa (japonica cultivar-group), mRNA 74 3e-10
2gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 74 3e-10
3dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 74 3e-10
4gb|AC092559.4| Oryza sativa chromosome 3 BAC OSJNBb0096M04 genom... 74 3e-10
5gb|AC096688.4| Oryza sativa chromosome 3 BAC OSJNBa0015N08 genom... 74 3e-10
6gb|AC147004.2| Homo sapiens chromosome 8, clone RP13-895A16, com... 44 0.28
7emb|AL022316.2|HS126B4 Human DNA sequence from clone CTA-126B4 o... 42 1.1
8dbj|AB004268.1| Canis familiaris mRNA for CYP2D15, complete cds 42 1.1
9ref|NM_001003333.1| Canis familiaris cytochrome P450 2D (CYP2D15... 42 1.1
10gb|AC006409.2|AC006409 Homo sapiens Chromosome 11q12.2 PAC clone... 42 1.1
11dbj|AP003559.3| Homo sapiens genomic DNA, chromosome 11 clone:RP... 42 1.1
12dbj|D17397.1|DOGCYP2D Canis familiaris CYP2D mRNA for P-450 2D, ... 42 1.1
13gb|U65744.1|HSU65744 Human chromosome 11 cosmid A9 including cel... 42 1.1
14emb|AL714021.12| Mouse DNA sequence from clone RP23-305F20 on ch... 42 1.1
15ref|XM_507838.1| PREDICTED: Pan troglodytes a disintegrin-like a... 40 4.4
16ref|XM_464369.1| Oryza sativa (japonica cultivar-group), mRNA 40 4.4
17gb|AC158954.17| Mus musculus chromosome 15, clone RP23-213P14, c... 40 4.4
18ref|NM_184766.1| Oryza sativa (japonica cultivar-group), mRNA 40 4.4
19emb|AL360298.14| Human DNA sequence from clone RP11-39H13 on chr... 40 4.4
20emb|AL049773.1|HS10618A Human DNA sequence from clone RP5-1061O1... 40 4.4
21emb|AL035404.20|HS144F13 Human DNA sequence from clone RP1-144F1... 40 4.4
22ref|XM_775510.1| PREDICTED: Strongylocentrotus purpuratus simila... 40 4.4
23gb|AE008847.1| Salmonella typhimurium LT2, section 151 of 220 of... 40 4.4
24emb|AL939122.1|SCO939122 Streptomyces coelicolor A3(2) complete ... 40 4.4
25emb|AL627278.1| Salmonella enterica serovar Typhi (Salmonella ty... 40 4.4
26dbj|AP008232.1| Sodalis glossinidius str. 'morsitans' DNA, compl... 40 4.4
27emb|CR607285.1| full-length cDNA clone CS0DF038YK15 of Fetal bra... 40 4.4
28gb|CP000267.1| Rhodoferax ferrireducens DSM 15236, complete genome 40 4.4
29gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome 40 4.4
30gb|AC084404.8|AC084404 Oryza sativa chromosome 3 BAC OSJNBa0026A... 40 4.4
31dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.4
32gb|AC084319.5|AC084319 Oryza sativa chromosome 3 BAC OSJNBa0004B... 40 4.4
33gb|AC006487.9| Homo sapiens chromosome 17, clone RP5-1029K10, co... 40 4.4
34gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 40 4.4
35gb|AC115109.2| Homo sapiens BAC clone RP11-78I10 from 2, complet... 40 4.4
36gb|CP000026.1| Salmonella enterica subsp. enterica serovar Parat... 40 4.4
37dbj|AK181794.1| Mus musculus cDNA, clone:Y0G0119H09, strand:unsp... 40 4.4
38dbj|AP004000.3| Oryza sativa (japonica cultivar-group) genomic D... 40 4.4
39dbj|AP003990.3| Oryza sativa (japonica cultivar-group) genomic D... 40 4.4
40dbj|AK068907.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 4.4
41gb|AC171271.4| Mus musculus chromosome 5, clone RP24-99D19, comp... 40 4.4
42gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi... 40 4.4
43gb|AE017220.1| Salmonella enterica subsp. enterica serovar Chole... 40 4.4
44dbj|AP000781.6| Homo sapiens genomic DNA, chromosome 11 clone:RP... 40 4.4
45gb|AC084070.57| Mus musculus strain C57BL/6J chromosome 5 clone ... 40 4.4
46gb|AC123681.12| Mus musculus chromosome 15, clone RP23-287O20, c... 40 4.4
47gb|L25602.1|MUSBMP2A Mus musculus bone morphogenetic protein 2 (... 40 4.4
48emb|AL807764.9| Mouse DNA sequence from clone RP23-400F8 on chro... 40 4.4
49gb|M64683.1|STMACTII Streptomyces coelicolor ORF1-4 (actII) gene... 40 4.4 
>ref|NM_185174.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1584

 Score = 73.8 bits (37), Expect = 3e-10
 Identities = 58/65 (89%)
 Strand = Plus / Plus

                                                                       
Query: 266 ctggcccggcggcacgggccggtgatgatggtccggctgggcatggtcccggcggtggtg 325
           ||||| |||||||||||||||||||||||| | |||||||||  ||| ||||||||||||
Sbjct: 223 ctggcgcggcggcacgggccggtgatgatgctgcggctgggcgcggtgccggcggtggtg 282

                
Query: 326 ctgtc 330
            ||||
Sbjct: 283 gtgtc 287
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 73.8 bits (37), Expect = 3e-10
 Identities = 58/65 (89%)
 Strand = Plus / Plus

                                                                            
Query: 266      ctggcccggcggcacgggccggtgatgatggtccggctgggcatggtcccggcggtggtg 325
                ||||| |||||||||||||||||||||||| | |||||||||  ||| ||||||||||||
Sbjct: 35474293 ctggcgcggcggcacgggccggtgatgatgctgcggctgggcgcggtgccggcggtggtg 35474352

                     
Query: 326      ctgtc 330
                 ||||
Sbjct: 35474353 gtgtc 35474357



 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 218      ggcaacctgcaccagatcgg 237
                ||||||||||||||||||||
Sbjct: 20358072 ggcaacctgcaccagatcgg 20358091
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 73.8 bits (37), Expect = 3e-10
 Identities = 58/65 (89%)
 Strand = Plus / Plus

                                                                            
Query: 266      ctggcccggcggcacgggccggtgatgatggtccggctgggcatggtcccggcggtggtg 325
                ||||| |||||||||||||||||||||||| | |||||||||  ||| ||||||||||||
Sbjct: 35564365 ctggcgcggcggcacgggccggtgatgatgctgcggctgggcgcggtgccggcggtggtg 35564424

                     
Query: 326      ctgtc 330
                 ||||
Sbjct: 35564425 gtgtc 35564429



 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 218      ggcaacctgcaccagatcgg 237
                ||||||||||||||||||||
Sbjct: 20351101 ggcaacctgcaccagatcgg 20351120
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>gb|AC092559.4| Oryza sativa chromosome 3 BAC OSJNBb0096M04 genomic sequence, complete
             sequence
          Length = 133846

 Score = 73.8 bits (37), Expect = 3e-10
 Identities = 58/65 (89%)
 Strand = Plus / Minus

                                                                         
Query: 266   ctggcccggcggcacgggccggtgatgatggtccggctgggcatggtcccggcggtggtg 325
             ||||| |||||||||||||||||||||||| | |||||||||  ||| ||||||||||||
Sbjct: 13333 ctggcgcggcggcacgggccggtgatgatgctgcggctgggcgcggtgccggcggtggtg 13274

                  
Query: 326   ctgtc 330
              ||||
Sbjct: 13273 gtgtc 13269
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>gb|AC096688.4| Oryza sativa chromosome 3 BAC OSJNBa0015N08 genomic sequence,
            complete sequence
          Length = 145290

 Score = 73.8 bits (37), Expect = 3e-10
 Identities = 58/65 (89%)
 Strand = Plus / Plus

                                                                        
Query: 266  ctggcccggcggcacgggccggtgatgatggtccggctgggcatggtcccggcggtggtg 325
            ||||| |||||||||||||||||||||||| | |||||||||  ||| ||||||||||||
Sbjct: 7256 ctggcgcggcggcacgggccggtgatgatgctgcggctgggcgcggtgccggcggtggtg 7315

                 
Query: 326  ctgtc 330
             ||||
Sbjct: 7316 gtgtc 7320
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>gb|AC147004.2| Homo sapiens chromosome 8, clone RP13-895A16, complete sequence
          Length = 109297

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                             
Query: 99  tcctcctcctcccactggcctccttcctcctcac 132
           ||||||||||| ||| || |||||||||||||||
Sbjct: 95  tcctcctcctcacacgggactccttcctcctcac 128
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>emb|AL022316.2|HS126B4 Human DNA sequence from clone CTA-126B4 on chromosome 22q13.2-13.31,
             complete sequence
          Length = 156212

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 94    agccatcctcctcctcccact 114
             |||||||||||||||||||||
Sbjct: 57880 agccatcctcctcctcccact 57860
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>dbj|AB004268.1| Canis familiaris mRNA for CYP2D15, complete cds
          Length = 1631

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 207 tgcccatggtgggcaacctgc 227
           |||||||||||||||||||||
Sbjct: 180 tgcccatggtgggcaacctgc 200
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>ref|NM_001003333.1| Canis familiaris cytochrome P450 2D (CYP2D15), mRNA
          Length = 1665

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 207 tgcccatggtgggcaacctgc 227
           |||||||||||||||||||||
Sbjct: 214 tgcccatggtgggcaacctgc 234
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>gb|AC006409.2|AC006409 Homo sapiens Chromosome 11q12.2 PAC clone pDJ52b24 containing homology
             to human acidic ribosomal phosphoprotein PO cds, complete
             sequence
          Length = 114339

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 99    tcctcctcctcccactggcct 119
             |||||||||||||||||||||
Sbjct: 81415 tcctcctcctcccactggcct 81395
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>dbj|AP003559.3| Homo sapiens genomic DNA, chromosome 11 clone:RP11-794G24, complete
              sequence
          Length = 181439

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 99     tcctcctcctcccactggcct 119
              |||||||||||||||||||||
Sbjct: 141764 tcctcctcctcccactggcct 141784
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>dbj|D17397.1|DOGCYP2D Canis familiaris CYP2D mRNA for P-450 2D, complete cds
          Length = 1665

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 207 tgcccatggtgggcaacctgc 227
           |||||||||||||||||||||
Sbjct: 214 tgcccatggtgggcaacctgc 234
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>gb|U65744.1|HSU65744 Human chromosome 11 cosmid A9 including cellutagmin II gene, complete
             sequence
          Length = 40108

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 99    tcctcctcctcccactggcct 119
             |||||||||||||||||||||
Sbjct: 13359 tcctcctcctcccactggcct 13339
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>emb|AL714021.12| Mouse DNA sequence from clone RP23-305F20 on chromosome X, complete
              sequence
          Length = 182607

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 115    ggcctccttcctcctcacccg 135
              |||||||||||||||||||||
Sbjct: 172263 ggcctccttcctcctcacccg 172283
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>ref|XM_507838.1| PREDICTED: Pan troglodytes a disintegrin-like and metalloprotease
            (reprolysin type) with thrombospondin type 1 motif, 14
            (LOC450513), mRNA
          Length = 6843

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 105  tcctcccactggcctccttc 124
            ||||||||||||||||||||
Sbjct: 1879 tcctcccactggcctccttc 1860
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>ref|XM_464369.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1791

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 53/64 (82%)
 Strand = Plus / Plus

                                                                       
Query: 172 tggcggccttaggctgccaccgtgcccgtggaggctgcccatggtgggcaacctgcacca 231
           ||||||| | |||||||| ||  | |||||| |||||||  || | ||||||||||||||
Sbjct: 155 tggcggcatgaggctgccgcctgggccgtggcggctgccggtgatcggcaacctgcacca 214

               
Query: 232 gatc 235
           ||||
Sbjct: 215 gatc 218
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>gb|AC158954.17| Mus musculus chromosome 15, clone RP23-213P14, complete sequence
          Length = 188940

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 95     gccatcctcctcctcccact 114
              ||||||||||||||||||||
Sbjct: 124798 gccatcctcctcctcccact 124817
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>ref|NM_184766.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 435

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 218 ggcaacctgcaccagatcgg 237
           ||||||||||||||||||||
Sbjct: 131 ggcaacctgcaccagatcgg 150
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>emb|AL360298.14| Human DNA sequence from clone RP11-39H13 on chromosome 1 Contains a
             novel gene, complete sequence
          Length = 107835

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 99    tcctcctcctcccactggcctcct 122
             |||| |||||||||||||||||||
Sbjct: 32468 tccttctcctcccactggcctcct 32445
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>emb|AL049773.1|HS10618A Human DNA sequence from clone RP5-1061O18 on chromosome 22q13.32-13.33
             Contains a GSS, complete sequence
          Length = 45333

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 37    aatggctgctgcttcccttg 56
             ||||||||||||||||||||
Sbjct: 44209 aatggctgctgcttcccttg 44190
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>emb|AL035404.20|HS144F13 Human DNA sequence from clone RP1-144F13 on chromosome 1p33-34.3 Contains
              the HEYL gene for hairy/enhancer-of-split related protein
              with YRPW-like motif, a novel gene, the NT5C1A gene for
              cytosolic IA 5'-nucleotidase, the HPCAL4 gene for
              hippocalcin like 4, a novel pseudogene, the 5' end of the
              PPIE gene for peptidylprolyl isomerase E (cyclophilin E)
              and six CpG islands, complete sequence
          Length = 154412

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 307    catggtcccggcggtggtgc 326
              ||||||||||||||||||||
Sbjct: 132555 catggtcccggcggtggtgc 132536
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>ref|XM_775510.1| PREDICTED: Strongylocentrotus purpuratus similar to Ly1 antibody
           reactive clone (LOC575094), mRNA
          Length = 2335

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 25  ccaagcaggaacaatggctgctgc 48
           |||| |||||||||||||||||||
Sbjct: 387 ccaaacaggaacaatggctgctgc 410
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>gb|AE008847.1| Salmonella typhimurium LT2, section 151 of 220 of the complete genome
          Length = 20604

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 301   gctgggcatggtcccggcggtggtgctg 328
             |||||||||| | |||||||||||||||
Sbjct: 13366 gctgggcatgattccggcggtggtgctg 13339
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>emb|AL939122.1|SCO939122 Streptomyces coelicolor A3(2) complete genome; segment 19/29
          Length = 311000

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 246    cccaccgggacctggcacgg 265
              ||||||||||||||||||||
Sbjct: 153613 cccaccgggacctggcacgg 153594
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>emb|AL627278.1| Salmonella enterica serovar Typhi (Salmonella typhi) strain CT18,
             complete chromosome; segment 14/20
          Length = 258050

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 301   gctgggcatggtcccggcggtggtgctg 328
             |||||||||| | |||||||||||||||
Sbjct: 22602 gctgggcatgattccggcggtggtgctg 22575
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>dbj|AP008232.1| Sodalis glossinidius str. 'morsitans' DNA, complete genome
          Length = 4171146

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 301    gctgggcatggtcccggcggtggtgctg 328
              |||||||||| | |||||||||||||||
Sbjct: 472538 gctgggcatgattccggcggtggtgctg 472565
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>emb|CR607285.1| full-length cDNA clone CS0DF038YK15 of Fetal brain of Homo sapiens
           (human)
          Length = 1946

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 28  agcaggaacaatggctgctgcttc 51
           |||||||| |||||||||||||||
Sbjct: 301 agcaggaataatggctgctgcttc 324
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>gb|CP000267.1| Rhodoferax ferrireducens DSM 15236, complete genome
          Length = 4712337

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 260     gcacggctggcccggcggca 279
               ||||||||||||||||||||
Sbjct: 1534988 gcacggctggcccggcggca 1535007
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>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome
          Length = 4352825

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 273    ggcggcacgggccggtgatg 292
              ||||||||||||||||||||
Sbjct: 685540 ggcggcacgggccggtgatg 685559
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>gb|AC084404.8|AC084404 Oryza sativa chromosome 3 BAC OSJNBa0026A15 genomic sequence, complete
              sequence
          Length = 156929

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 218    ggcaacctgcaccagatcgg 237
              ||||||||||||||||||||
Sbjct: 153379 ggcaacctgcaccagatcgg 153398
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 53/64 (82%)
 Strand = Plus / Plus

                                                                           
Query: 172     tggcggccttaggctgccaccgtgcccgtggaggctgcccatggtgggcaacctgcacca 231
               ||||||| | |||||||| ||  | |||||| |||||||  || | ||||||||||||||
Sbjct: 4765301 tggcggcatgaggctgccgcctgggccgtggcggctgccggtgatcggcaacctgcacca 4765360

                   
Query: 232     gatc 235
               ||||
Sbjct: 4765361 gatc 4765364
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>gb|AC084319.5|AC084319 Oryza sativa chromosome 3 BAC OSJNBa0004B24 genomic sequence,
            complete sequence
          Length = 152883

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 218  ggcaacctgcaccagatcgg 237
            ||||||||||||||||||||
Sbjct: 2372 ggcaacctgcaccagatcgg 2391
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>gb|AC006487.9| Homo sapiens chromosome 17, clone RP5-1029K10, complete sequence
          Length = 186617

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 91    tgtagccatcctcctcctcc 110
             ||||||||||||||||||||
Sbjct: 32940 tgtagccatcctcctcctcc 32959
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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 310     ggtcccggcggtggtgctgt 329
               ||||||||||||||||||||
Sbjct: 4702487 ggtcccggcggtggtgctgt 4702506
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>gb|AC115109.2| Homo sapiens BAC clone RP11-78I10 from 2, complete sequence
          Length = 59356

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 104   ctcctcccactggcctcctt 123
             ||||||||||||||||||||
Sbjct: 20101 ctcctcccactggcctcctt 20120
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>gb|CP000026.1| Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150
          Length = 4585229

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                           
Query: 301     gctgggcatggtcccggcggtggtgctg 328
               |||||||||| | |||||||||||||||
Sbjct: 3181560 gctgggcatgattccggcggtggtgctg 3181533
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>dbj|AK181794.1| Mus musculus cDNA, clone:Y0G0119H09, strand:unspecified
          Length = 304

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 189 caccgtgcccgtggaggctg 208
           ||||||||||||||||||||
Sbjct: 258 caccgtgcccgtggaggctg 239
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>dbj|AP004000.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1115_B01
          Length = 129329

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 53/64 (82%)
 Strand = Plus / Plus

                                                                         
Query: 172   tggcggccttaggctgccaccgtgcccgtggaggctgcccatggtgggcaacctgcacca 231
             ||||||| | |||||||| ||  | |||||| |||||||  || | ||||||||||||||
Sbjct: 45891 tggcggcatgaggctgccgcctgggccgtggcggctgccggtgatcggcaacctgcacca 45950

                 
Query: 232   gatc 235
             ||||
Sbjct: 45951 gatc 45954
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>dbj|AP003990.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
            clone:OJ1073_F05
          Length = 124252

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 53/64 (82%)
 Strand = Plus / Plus

                                                                        
Query: 172  tggcggccttaggctgccaccgtgcccgtggaggctgcccatggtgggcaacctgcacca 231
            ||||||| | |||||||| ||  | |||||| |||||||  || | ||||||||||||||
Sbjct: 7460 tggcggcatgaggctgccgcctgggccgtggcggctgccggtgatcggcaacctgcacca 7519

                
Query: 232  gatc 235
            ||||
Sbjct: 7520 gatc 7523
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>dbj|AK068907.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023002L07, full
           insert sequence
          Length = 1791

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 53/64 (82%)
 Strand = Plus / Plus

                                                                       
Query: 172 tggcggccttaggctgccaccgtgcccgtggaggctgcccatggtgggcaacctgcacca 231
           ||||||| | |||||||| ||  | |||||| |||||||  || | ||||||||||||||
Sbjct: 155 tggcggcatgaggctgccgcctgggccgtggcggctgccggtgatcggcaacctgcacca 214

               
Query: 232 gatc 235
           ||||
Sbjct: 215 gatc 218
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>gb|AC171271.4| Mus musculus chromosome 5, clone RP24-99D19, complete sequence
          Length = 170255

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 112   actggcctccttcctcctcacccg 135
             ||||||| ||||||||||||||||
Sbjct: 71688 actggccaccttcctcctcacccg 71665
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>gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome
          Length = 4791961

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                           
Query: 301     gctgggcatggtcccggcggtggtgctg 328
               |||||||||| | |||||||||||||||
Sbjct: 3214097 gctgggcatgattccggcggtggtgctg 3214070
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>gb|AE017220.1| Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67,
               complete genome
          Length = 4755700

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                           
Query: 301     gctgggcatggtcccggcggtggtgctg 328
               |||||||||| | |||||||||||||||
Sbjct: 3333176 gctgggcatgattccggcggtggtgctg 3333149
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>dbj|AP000781.6| Homo sapiens genomic DNA, chromosome 11 clone:RP11-872D17, complete
             sequence
          Length = 190251

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 28    agcaggaacaatggctgctgcttc 51
             |||||||| |||||||||||||||
Sbjct: 58496 agcaggaataatggctgctgcttc 58473
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>gb|AC084070.57| Mus musculus strain C57BL/6J chromosome 5 clone rp23-268d19, complete
              sequence
          Length = 347166

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 112    actggcctccttcctcctcacccg 135
              ||||||| ||||||||||||||||
Sbjct: 268405 actggccaccttcctcctcacccg 268428
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>gb|AC123681.12| Mus musculus chromosome 15, clone RP23-287O20, complete sequence
          Length = 172148

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 95   gccatcctcctcctcccact 114
            ||||||||||||||||||||
Sbjct: 8884 gccatcctcctcctcccact 8903
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>gb|L25602.1|MUSBMP2A Mus musculus bone morphogenetic protein 2 (BMP-2) gene, complete
           cds
          Length = 11605

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 109 cccactggcctccttcctcc 128
           ||||||||||||||||||||
Sbjct: 921 cccactggcctccttcctcc 940
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>emb|AL807764.9| Mouse DNA sequence from clone RP23-400F8 on chromosome 4, complete
             sequence
          Length = 226637

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 99    tcctcctcctcccactggcctcct 122
             ||||||||||||| ||||||||||
Sbjct: 74039 tcctcctcctccctctggcctcct 74016
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>gb|M64683.1|STMACTII Streptomyces coelicolor ORF1-4 (actII) gene, complete cds
          Length = 5900

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 246 cccaccgggacctggcacgg 265
           ||||||||||||||||||||
Sbjct: 623 cccaccgggacctggcacgg 604


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,632,430
Number of Sequences: 3902068
Number of extensions: 3632430
Number of successful extensions: 78861
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 78380
Number of HSP's gapped (non-prelim): 484
length of query: 334
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 312
effective length of database: 17,147,199,772
effective search space: 5349926328864
effective search space used: 5349926328864
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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