ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet08g05 |
|---|---|
| Clone Library Name | barley_pub |
>RNPS1_RAT (Q6AYK1) RNA-binding protein with serine-rich domain 1| Length = 305 Score = 32.0 bits (71), Expect = 0.41 Identities = 24/71 (33%), Positives = 32/71 (45%), Gaps = 7/71 (9%) Frame = -3 Query: 297 TRPLAPWQPTPSQSQHEAPDHTVRRWTAPPPLRFRAKPRSARRSSG-------WQVAHAA 139 T LAPW P P + P RR PPP+ R+ PR RRS + + + Sbjct: 236 TAVLAPW-PRPPPRRFSPP----RRMLPPPPMWRRSPPRMRRRSRSPRRRSPVRRRSRSP 290 Query: 138 GKRNAKQSSSS 106 G+R + SSS Sbjct: 291 GRRRHRSRSSS 301
>RNPS1_PONPY (Q5NVM8) RNA-binding protein with serine-rich domain 1| Length = 305 Score = 32.0 bits (71), Expect = 0.41 Identities = 24/71 (33%), Positives = 32/71 (45%), Gaps = 7/71 (9%) Frame = -3 Query: 297 TRPLAPWQPTPSQSQHEAPDHTVRRWTAPPPLRFRAKPRSARRSSG-------WQVAHAA 139 T LAPW P P + P RR PPP+ R+ PR RRS + + + Sbjct: 236 TAVLAPW-PRPPPRRFSPP----RRMLPPPPMWRRSPPRMRRRSRSPRRRSPVRRRSRSP 290 Query: 138 GKRNAKQSSSS 106 G+R + SSS Sbjct: 291 GRRRHRSRSSS 301
>RNPS1_MOUSE (Q99M28) RNA-binding protein with serine-rich domain 1| Length = 305 Score = 32.0 bits (71), Expect = 0.41 Identities = 24/71 (33%), Positives = 32/71 (45%), Gaps = 7/71 (9%) Frame = -3 Query: 297 TRPLAPWQPTPSQSQHEAPDHTVRRWTAPPPLRFRAKPRSARRSSG-------WQVAHAA 139 T LAPW P P + P RR PPP+ R+ PR RRS + + + Sbjct: 236 TAVLAPW-PRPPPRRFSPP----RRMLPPPPMWRRSPPRMRRRSRSPRRRSPVRRRSRSP 290 Query: 138 GKRNAKQSSSS 106 G+R + SSS Sbjct: 291 GRRRHRSRSSS 301
>RNPS1_MACFA (Q4R5N1) RNA-binding protein with serine-rich domain 1| Length = 305 Score = 32.0 bits (71), Expect = 0.41 Identities = 24/71 (33%), Positives = 32/71 (45%), Gaps = 7/71 (9%) Frame = -3 Query: 297 TRPLAPWQPTPSQSQHEAPDHTVRRWTAPPPLRFRAKPRSARRSSG-------WQVAHAA 139 T LAPW P P + P RR PPP+ R+ PR RRS + + + Sbjct: 236 TAVLAPW-PRPPPRRFSPP----RRMLPPPPMWRRSPPRMRRRSRSPRRRSPVRRRSRSP 290 Query: 138 GKRNAKQSSSS 106 G+R + SSS Sbjct: 291 GRRRHRSRSSS 301
>RNPS1_HUMAN (Q15287) RNA-binding protein with serine-rich domain 1 (SR-related| protein LDC2) Length = 305 Score = 32.0 bits (71), Expect = 0.41 Identities = 24/71 (33%), Positives = 32/71 (45%), Gaps = 7/71 (9%) Frame = -3 Query: 297 TRPLAPWQPTPSQSQHEAPDHTVRRWTAPPPLRFRAKPRSARRSSG-------WQVAHAA 139 T LAPW P P + P RR PPP+ R+ PR RRS + + + Sbjct: 236 TAVLAPW-PRPPPRRFSPP----RRMLPPPPMWRRSPPRMRRRSRSPRRRSPVRRRSRSP 290 Query: 138 GKRNAKQSSSS 106 G+R + SSS Sbjct: 291 GRRRHRSRSSS 301
>RNPS1_XENLA (Q5XG24) RNA-binding protein with serine-rich domain 1| Length = 283 Score = 30.0 bits (66), Expect = 1.6 Identities = 16/41 (39%), Positives = 19/41 (46%) Frame = -3 Query: 288 LAPWQPTPSQSQHEAPDHTVRRWTAPPPLRFRAKPRSARRS 166 L PW P + P RR PPP+ R+ PR RRS Sbjct: 216 LTPWPMRPMPRRFSPP----RRMLPPPPMWRRSPPRMRRRS 252
>SYS1_ENTFA (Q839Q8) Seryl-tRNA synthetase 1 (EC 6.1.1.11) (Serine--tRNA ligase| 1) (SerRS 1) Length = 423 Score = 30.0 bits (66), Expect = 1.6 Identities = 21/65 (32%), Positives = 28/65 (43%), Gaps = 4/65 (6%) Frame = -3 Query: 291 PLAPWQPTPSQSQHEAPDHTVRRWTAPPPLRFRAKPRSARRSSGWQVAHAAG----KRNA 124 P P + P + EA + VRRW+ P F KP W++ A G +R A Sbjct: 105 PNLPHESVPVGAD-EAANVEVRRWSTPKTFSFEPKPH-------WEIGEALGILDFERGA 156 Query: 123 KQSSS 109 K S S Sbjct: 157 KVSGS 161
>LPXK_BORPE (Q7VVB2) Tetraacyldisaccharide 4'-kinase (EC 2.7.1.130) (Lipid A| 4'-kinase) Length = 347 Score = 29.3 bits (64), Expect = 2.7 Identities = 22/81 (27%), Positives = 32/81 (39%), Gaps = 1/81 (1%) Frame = -3 Query: 294 RPLAPW-QPTPSQSQHEAPDHTVRRWTAPPPLRFRAKPRSARRSSGWQVAHAAGKRNAKQ 118 R LA W +PT +Q + T+ A PP R A + +Q AG R A Sbjct: 221 RQLAMWLEPTHAQRVTDGATRTLADLAALPPARLAAAAGIGNPARFFQTLEQAGIRPAHT 280 Query: 117 SSSSQHFAMESAAMCAQTREL 55 + H+A + A +L Sbjct: 281 LALPDHYAYAQSPFTALDADL 301
>LPXK_BORPA (Q7W7F7) Tetraacyldisaccharide 4'-kinase (EC 2.7.1.130) (Lipid A| 4'-kinase) Length = 347 Score = 29.3 bits (64), Expect = 2.7 Identities = 22/81 (27%), Positives = 32/81 (39%), Gaps = 1/81 (1%) Frame = -3 Query: 294 RPLAPW-QPTPSQSQHEAPDHTVRRWTAPPPLRFRAKPRSARRSSGWQVAHAAGKRNAKQ 118 R LA W +PT +Q + T+ A PP R A + +Q AG R A Sbjct: 221 RQLAMWLEPTHAQRVTDGATRTLADLAALPPARLAAAAGIGNPARFFQTLEQAGIRPAHT 280 Query: 117 SSSSQHFAMESAAMCAQTREL 55 + H+A + A +L Sbjct: 281 LALPDHYAYAQSPFTALDADL 301
>LPXK_BORBR (Q7WKU5) Tetraacyldisaccharide 4'-kinase (EC 2.7.1.130) (Lipid A| 4'-kinase) Length = 347 Score = 29.3 bits (64), Expect = 2.7 Identities = 22/81 (27%), Positives = 32/81 (39%), Gaps = 1/81 (1%) Frame = -3 Query: 294 RPLAPW-QPTPSQSQHEAPDHTVRRWTAPPPLRFRAKPRSARRSSGWQVAHAAGKRNAKQ 118 R LA W +PT +Q + T+ A PP R A + +Q AG R A Sbjct: 221 RQLAMWLEPTHAQRVTDGATRTLADLAALPPARLAAAAGIGNPARFFQTLEQAGIRPAHT 280 Query: 117 SSSSQHFAMESAAMCAQTREL 55 + H+A + A +L Sbjct: 281 LALPDHYAYAQSPFTALDADL 301
>KTNA1_HUMAN (O75449) Katanin p60 ATPase-containing subunit A1 (EC 3.6.4.3)| (Katanin p60 subunit A1) (p60 katanin) Length = 491 Score = 29.3 bits (64), Expect = 2.7 Identities = 20/77 (25%), Positives = 33/77 (42%), Gaps = 7/77 (9%) Frame = -3 Query: 258 SQHEAPDHTVRRWTAPPPLRFRAKPRSARR-SSGWQVAHAAGKRNA------KQSSSSQH 100 +QH+ P W+ P P+ R P +R SS + + G R + + S+ + H Sbjct: 86 AQHDLPASEGEVWSMPVPVERRPSPGPRKRQSSQYSDPKSHGNRPSTTVRVHRSSAQNVH 145 Query: 99 FAMESAAMCAQTRELNK 49 A C + +E NK Sbjct: 146 NDRGKAVRCREKKEQNK 162
>KTNA1_XENLA (Q9PUL2) Katanin p60 ATPase-containing subunit (EC 3.6.4.3)| (Katanin p60 subunit) (p60 katanin) (Fragment) Length = 486 Score = 29.3 bits (64), Expect = 2.7 Identities = 12/32 (37%), Positives = 16/32 (50%) Frame = -3 Query: 258 SQHEAPDHTVRRWTAPPPLRFRAKPRSARRSS 163 +QHE P H W+ P P+ R P +R S Sbjct: 86 TQHEFPSHDGEVWSLPVPVERRPSPGPRKRQS 117
>MYRIP_HUMAN (Q8NFW9) Rab effector MyRIP (Myosin-VIIa- and Rab-interacting| protein) (Exophilin-8) (Slp homolog lacking C2 domains c) Length = 859 Score = 29.3 bits (64), Expect = 2.7 Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 2/60 (3%) Frame = -3 Query: 216 APPPLRFRAKPRSARRSSGWQVAHAAGKRNAKQSSSSQHFAMESA--AMCAQTRELNKKP 43 APPP R AKP+S + + A + S S + F A +C ++R L + P Sbjct: 362 APPPTRLLAKPKSGTFQALEVASSVASAYDEMGSDSEEDFDWSEALSKLCPRSRALPRNP 421
>PMYT1_XENLA (Q91618) Membrane-associated tyrosine- and threonine-specific| cdc2-inhibitory kinase (EC 2.7.11.1) (Myt1 kinase) Length = 548 Score = 28.9 bits (63), Expect = 3.5 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 4/35 (11%) Frame = +1 Query: 154 LPPRRPTRAA----GLGPEPQRRWCRPPPHGVVWR 246 LPPR P ++A + P QR W +P P V +R Sbjct: 44 LPPRPPVKSALPVSRIFPNKQRSWSQPRPQSVSFR 78
>FUSB_BURCE (P24127) Fusaric acid resistance protein fusB| Length = 142 Score = 28.9 bits (63), Expect = 3.5 Identities = 15/46 (32%), Positives = 18/46 (39%), Gaps = 5/46 (10%) Frame = +3 Query: 96 RNAGCC-----CSAWRFSCQRRARPATPTTYARCGAWPGTSEAVVP 218 R++GC CS WR C R P P A S A+ P Sbjct: 96 RSSGCSRSSRSCSCWRSPCGSRCAPPAPRATATSAVTASCSPAIRP 141
>Y11K_STRFR (P26800) Hypothetical 11.4 kDa protein (ORF1)| Length = 99 Score = 28.5 bits (62), Expect = 4.5 Identities = 17/47 (36%), Positives = 19/47 (40%), Gaps = 2/47 (4%) Frame = -3 Query: 297 TRPLAPWQPTPSQSQHEAPDHTVRRWTAPP--PLRFRAKPRSARRSS 163 T P A W P S P R PP R R +PRS+R S Sbjct: 38 TLPSAAWDPVGSVRTQVTPSRAAPRTCQPPAWSSRRRGRPRSSRARS 84
>ACHA4_HUMAN (P43681) Neuronal acetylcholine receptor protein, alpha-4 subunit| precursor Length = 627 Score = 28.5 bits (62), Expect = 4.5 Identities = 13/27 (48%), Positives = 15/27 (55%) Frame = +1 Query: 154 LPPRRPTRAAGLGPEPQRRWCRPPPHG 234 LPP++P A P P CR PPHG Sbjct: 429 LPPQQPLEAEKASPHPSPGPCR-PPHG 454
>SMN_RAT (O35876) Survival motor neuron protein| Length = 289 Score = 28.5 bits (62), Expect = 4.5 Identities = 14/26 (53%), Positives = 16/26 (61%), Gaps = 1/26 (3%) Frame = +1 Query: 154 LPPRRPTRAAGLGP-EPQRRWCRPPP 228 LPP P AGLGP +P R+ PPP Sbjct: 190 LPPPPPVPGAGLGPGKPGLRFSGPPP 215
>NORK_PEA (Q8LKZ1) Nodulation receptor kinase precursor (EC 2.7.11.1)| Length = 924 Score = 28.1 bits (61), Expect = 5.9 Identities = 11/21 (52%), Positives = 13/21 (61%), Gaps = 2/21 (9%) Frame = +2 Query: 236 WSGASCC--DWEGVGCHGANG 292 WSG C W+GV C G+NG Sbjct: 383 WSGDPCMLFPWKGVACDGSNG 403
>GUC2G_MOUSE (Q6TL19) Guanylate cyclase 2G precursor (EC 4.6.1.2) (Guanylyl| cyclase receptor G) (mGC-G) Length = 1100 Score = 28.1 bits (61), Expect = 5.9 Identities = 13/24 (54%), Positives = 14/24 (58%) Frame = -3 Query: 249 EAPDHTVRRWTAPPPLRFRAKPRS 178 EA DH+ WTAP LR R P S Sbjct: 716 EATDHSELYWTAPELLRLRESPCS 739
>URB1_USTMA (P40349) Siderophore biosynthesis regulatory protein URBS1| Length = 950 Score = 28.1 bits (61), Expect = 5.9 Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 2/86 (2%) Frame = -3 Query: 294 RPLAPWQPTPSQSQHEAPDHTVRRWTAPPPLRFRAKPRSARRSSGWQVAHAAGKRNAKQS 115 RP+AP +P + + +V + PP+R PR +R SS HAA + + Sbjct: 46 RPIAPADRSPERVSQHSRGASVHDADSLPPIR----PRGSRPSS--PSGHAADR-----A 94 Query: 114 SSSQHFAMESAAMCAQT--RELNKKP 43 SS H A +A + A++ R L + P Sbjct: 95 PSSHHNASSTATVPARSTARSLFRDP 120
>G7C_RAT (Q6MG64) Protein G7c precursor| Length = 892 Score = 28.1 bits (61), Expect = 5.9 Identities = 13/35 (37%), Positives = 18/35 (51%) Frame = +3 Query: 168 TYARCGAWPGTSEAVVPSTSARCGLAPRAAIGKVW 272 T++ P T+ A++PST G A R GK W Sbjct: 842 THSAAPVLPPTTPALLPSTLVTRGRAGRGTTGKTW 876
>CTPA_MYCLE (P46839) Cation-transporting P-type ATPase A (EC 3.6.3.-)| Length = 780 Score = 28.1 bits (61), Expect = 5.9 Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 1/34 (2%) Frame = -3 Query: 234 TVRRWTAPPPLRFRAKPRSARRSSGWQ-VAHAAG 136 TV+RW PPP R R+ S +S + VAH G Sbjct: 740 TVKRWRCPPPTRLRSTACSPVDASPLRPVAHRTG 773
>HMGN1_HUMAN (P05114) Nonhistone chromosomal protein HMG-14 (High-mobility group| nucleosome-binding domain-containing protein 1) Length = 99 Score = 27.7 bits (60), Expect = 7.7 Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 2/45 (4%) Frame = -3 Query: 249 EAPDHTVRRWTAPPPLRFRAKPR--SARRSSGWQVAHAAGKRNAK 121 E P R +A PP + AKP+ +A+ S + GKR AK Sbjct: 14 EEPKRRSARLSAKPPAKVEAKPKKAAAKDKSSDKKVQTKGKRGAK 58
>NUC1_YEAST (P08466) Mitochondrial nuclease (EC 3.1.30.-)| Length = 329 Score = 27.7 bits (60), Expect = 7.7 Identities = 18/57 (31%), Positives = 25/57 (43%) Frame = -3 Query: 207 PLRFRAKPRSARRSSGWQVAHAAGKRNAKQSSSSQHFAMESAAMCAQTRELNKKPFW 37 P +FR K R RS G+ H A +AK S + + MC Q E + +W Sbjct: 119 PEKFRGKLRDYFRS-GYDRGHQAPAADAKFSQQAMDDTFYLSNMCPQVGEGFNRDYW 174
>PI5PA_HUMAN (Q15735) Phosphatidylinositol 4,5-bisphosphate 5-phosphatase A (EC| 3.1.3.56) Length = 1006 Score = 27.7 bits (60), Expect = 7.7 Identities = 14/41 (34%), Positives = 19/41 (46%) Frame = -3 Query: 282 PWQPTPSQSQHEAPDHTVRRWTAPPPLRFRAKPRSARRSSG 160 P P P +S +P H+ R PP A PR +S+G Sbjct: 339 PPLPKPPRSPSRSPSHSPNRSPCVPPAPDMALPRLGTQSTG 379 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 45,348,255 Number of Sequences: 219361 Number of extensions: 814932 Number of successful extensions: 3497 Number of sequences better than 10.0: 26 Number of HSP's better than 10.0 without gapping: 3242 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3483 length of database: 80,573,946 effective HSP length: 75 effective length of database: 64,121,871 effective search space used: 1538924904 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
