ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baet08g01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1XYLT_LACBR (O52733) D-xylose-proton symporter (D-xylose transpor... 30 2.3
2MYCT_HUMAN (Q96QE2) Proton myo-inositol cotransporter (H(+)-myo-... 30 2.3
3CSBC_BACSU (P46333) Probable metabolite transport protein csbC 29 3.0
4MYCT_RAT (Q921A2) Proton myo-inositol cotransporter (H(+)-myo-in... 29 3.9

>XYLT_LACBR (O52733) D-xylose-proton symporter (D-xylose transporter)|
          Length = 457

 Score = 29.6 bits (65), Expect = 2.3
 Identities = 12/17 (70%), Positives = 16/17 (94%)
 Frame = +3

Query: 141 LMGYDSGVMSGAMLFIK 191
           L GYD+GV+SGA+LFI+
Sbjct: 19  LFGYDTGVISGAILFIQ 35



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>MYCT_HUMAN (Q96QE2) Proton myo-inositol cotransporter (H(+)-myo-inositol|
           cotransporter) (Hmit)
          Length = 629

 Score = 29.6 bits (65), Expect = 2.3
 Identities = 12/17 (70%), Positives = 15/17 (88%)
 Frame = +3

Query: 141 LMGYDSGVMSGAMLFIK 191
           L GYD+GV+SGAML +K
Sbjct: 75  LFGYDTGVVSGAMLLLK 91



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>CSBC_BACSU (P46333) Probable metabolite transport protein csbC|
          Length = 461

 Score = 29.3 bits (64), Expect = 3.0
 Identities = 12/16 (75%), Positives = 15/16 (93%)
 Frame = +3

Query: 141 LMGYDSGVMSGAMLFI 188
           L GYD+GV+SGA+LFI
Sbjct: 20  LYGYDTGVISGALLFI 35



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>MYCT_RAT (Q921A2) Proton myo-inositol cotransporter (H(+)-myo-inositol|
           cotransporter) (Hmit)
          Length = 618

 Score = 28.9 bits (63), Expect = 3.9
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +3

Query: 99  YAVACXXXXXXXXXLMGYDSGVMSGAMLFIK 191
           +  A          L GYD+GV+SGAML ++
Sbjct: 50  FVYAAAAFSALGGFLFGYDTGVVSGAMLLLR 80


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,198,576
Number of Sequences: 219361
Number of extensions: 51548
Number of successful extensions: 98
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 80,573,946
effective HSP length: 39
effective length of database: 72,018,867
effective search space used: 1728452808
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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