Clone Information

BLAST Search Result

Clone Name	baet08d07
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	Y4095_ARATH (Q9M160) Protein At4g00950	33	0.25
2	SRRM1_PONPY (Q5R5Q2) Serine/arginine repetitive matrix protein 1	28	0.48
3	SRRM1_HUMAN (Q8IYB3) Serine/arginine repetitive matrix protein 1...	28	0.48
4	SGO1_NEUCR (Q872U8) Shugoshin	32	0.73
5	IF2_MYCTU (P65131) Translation initiation factor IF-2	31	1.2
6	IF2_MYCBO (P65132) Translation initiation factor IF-2	31	1.2
7	TTC16_MACFA (Q95LZ5) Tetratricopeptide repeat protein 16 (TPR re...	31	1.2
8	MBD6_HUMAN (Q96DN6) Methyl-CpG-binding domain protein 6 (Methyl-...	27	1.3
9	VGLZ_EHV1K (P32515) Glycoprotein precursor	31	1.6
10	YLPM1_MOUSE (Q9R0I7) YLP motif-containing protein 1 (Nuclear pro...	31	1.6
11	YLPM1_HUMAN (P49750) YLP motif-containing protein 1 (Nuclear pro...	30	2.1
12	GRB10_MOUSE (Q60760) Growth factor receptor-bound protein 10 (GR...	30	2.1
13	TAF4_HUMAN (O00268) Transcription initiation factor TFIID subuni...	27	2.1
14	POLN_RUBVT (P13889) Nonstructural polyprotein [Contains: Proteas...	30	2.8
15	POLN_RUBVM (Q86500) Nonstructural polyprotein [Contains: Proteas...	30	2.8
16	IF2_MYCLE (Q9Z5I9) Translation initiation factor IF-2	30	2.8
17	CS016_HUMAN (Q8ND99) Protein C19orf16	25	2.9
18	MMPLB_STRCO (O54101) Putative membrane protein SCO5905	30	3.6
19	SRRM1_CHICK (Q5ZMJ9) Serine/arginine repetitive matrix protein 1	30	3.6
20	CS007_HUMAN (Q9UPT8) Zinc finger CCCH-type domain-containing pro...	30	3.6
21	BAT3_MOUSE (Q9Z1R2) Large proline-rich protein BAT3 (HLA-B-assoc...	30	3.6
22	TTC16_HUMAN (Q8NEE8) Tetratricopeptide repeat protein 16 (TPR re...	29	4.7
23	POLN_HEVBU (P29324) Non-structural polyprotein (EC 2.7.7.48) (RN...	29	4.7
24	RANB9_HUMAN (Q96S59) Ran-binding protein 9 (RanBP9) (RanBP7) (Ra...	29	4.7
25	IAA4_ORYSA (Q59AF4) Auxin-responsive protein IAA4 (Indoleacetic ...	29	4.7
26	AB1IP_MOUSE (Q8R5A3) Amyloid beta A4 precursor protein-binding f...	29	4.7
27	YCAD_SHIFL (Q83RZ5) MFS-type transporter protein ycaD	29	4.7
28	YCAD_ECOLI (P21503) MFS-type transporter protein ycaD	29	4.7
29	YCAD_ECOL6 (Q8FJC1) MFS-type transporter protein ycaD	29	4.7
30	YCAD_ECO57 (Q8XEB7) MFS-type transporter protein ycaD	29	4.7
31	SRRM1_MOUSE (Q52KI8) Serine/arginine repetitive matrix protein 1...	29	4.7
32	IF2_NOCFA (Q5YSC6) Translation initiation factor IF-2	29	4.7
33	CS007_MOUSE (Q6ZPZ3) Zinc finger CCCH-type domain-containing pro...	29	4.7
34	KLF5_HUMAN (Q13887) Krueppel-like factor 5 (Intestinal-enriched ...	29	6.2
35	TEGU_EBV (P03186) Large tegument protein	29	6.2
36	IE63_MCMVS (Q69154) Transcriptional regulator IE63 homolog (Prot...	29	6.2
37	KLF5_MOUSE (Q9Z0Z7) Krueppel-like factor 5 (Intestinal-enriched ...	29	6.2
38	ADRB1_MACMU (P47899) Beta-1 adrenergic receptor (Beta-1 adrenoce...	28	8.1
39	POLN_HEVPA (P33424) Non-structural polyprotein (EC 2.7.7.48) (RN...	28	8.1
40	SGS3_DROSI (P13729) Salivary glue protein Sgs-3 precursor	28	8.1
41	SETD8_MOUSE (Q2YDW7) Histone-lysine N-methyltransferase, H4 lysi...	28	8.1
42	LIX1L_RAT (Q5PQQ7) LIX1-like protein	28	8.1
43	YG3D_YEAST (P53281) Protein YGR136W	28	8.1
44	CSKI2_MOUSE (Q8VHK1) Caskin-2	28	8.1

>Y4095_ARATH (Q9M160) Protein At4g00950|
          Length = 291

 Score = 33.5 bits (75), Expect = 0.25
 Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
 Frame = +2

Query: 242 SSAGAVPFLWESQPGTPK-NAASDTAMPPLTPPPSYYSAAAKKH 370
           S + +VPF WE +PG PK ++ S ++    +P  SY S+  + H
Sbjct: 39  SISASVPFSWEEEPGKPKQHSTSSSSSSSSSPLTSYSSSPFETH 82

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>SRRM1_PONPY (Q5R5Q2) Serine/arginine repetitive matrix protein 1|
          Length = 917

 Score = 28.5 bits (62), Expect(2) = 0.48
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = +3

Query: 189 SPGTAPPRRRPSGSTTACPPP 251
           SP  +PPRRR   S  A PPP
Sbjct: 389 SPSASPPRRRHRPSPPATPPP 409



 Score = 22.7 bits (47), Expect(2) = 0.48
 Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 4/43 (9%)
 Frame = +2

Query: 320 PPLTPPPSYYSAAAKKHAPRKGKAAGGRKFR----PSRILGSI 436
           PP TPPP        +H+P   ++   RK R    P R  G +
Sbjct: 403 PPATPPPK------TRHSPTPQQSNRTRKSRVSVSPGRTSGKV 439

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>SRRM1_HUMAN (Q8IYB3) Serine/arginine repetitive matrix protein 1|
           (Ser/Arg-related nuclear matrix protein) (SR-related
           nuclear matrix protein of 160 kDa) (SRm160)
          Length = 904

 Score = 28.5 bits (62), Expect(2) = 0.48
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = +3

Query: 189 SPGTAPPRRRPSGSTTACPPP 251
           SP  +PPRRR   S  A PPP
Sbjct: 389 SPSASPPRRRHRPSPPATPPP 409



 Score = 22.7 bits (47), Expect(2) = 0.48
 Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 4/43 (9%)
 Frame = +2

Query: 320 PPLTPPPSYYSAAAKKHAPRKGKAAGGRKFR----PSRILGSI 436
           PP TPPP        +H+P   ++   RK R    P R  G +
Sbjct: 403 PPATPPPK------TRHSPTPQQSNRTRKSRVSVSPGRTSGKV 439

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>SGO1_NEUCR (Q872U8) Shugoshin|
          Length = 774

 Score = 32.0 bits (71), Expect = 0.73
 Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = +2

Query: 281 PGTPKNAASDTAMPPLTPPPSYYSAAAKKHAP-RKGKAA 394
           PGTP+ A+  T +   TPPP++ S+  +   P R+ +AA
Sbjct: 437 PGTPERASESTVVTHDTPPPAHISSNGETSRPSRRARAA 475

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>IF2_MYCTU (P65131) Translation initiation factor IF-2|
          Length = 900

 Score = 31.2 bits (69), Expect = 1.2
 Identities = 43/154 (27%), Positives = 60/154 (38%), Gaps = 11/154 (7%)
 Frame = +2

Query: 2   SLPPPLQDCNNSQGHGPSVSLCQSRDTSVHPSMAATVGNGKDREEAEVHRNQRQGGXXXX 181
           S P P +    S G GP  SL ++ D ++   MAA  GNGK    A   +    GG    
Sbjct: 55  SKPAPAKGTAKSPGKGPDKSLDKALDAAI--DMAA--GNGK--ATAAPAKAADSGGAAIV 108

Query: 182 XXXXXXX----XXXXPSFRVYYGVSSAGAVPFLWESQPG--TPK--NAASDTAMP---PL 328
                          PS +  +   + GA P     +PG  TP+  N    +A P   P+
Sbjct: 109 SPTTPAAPEPPTAVPPSPQAPHPGMAPGARPGP-VPKPGIRTPRVGNNPFSSAQPADRPI 167

Query: 329 TPPPSYYSAAAKKHAPRKGKAAGGRKFRPSRILG 430
             PP+     A+   PR G + G    RP   +G
Sbjct: 168 PRPPAPRPGTARPGVPRPGASPGSMPPRPGGAVG 201

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>IF2_MYCBO (P65132) Translation initiation factor IF-2|
          Length = 900

 Score = 31.2 bits (69), Expect = 1.2
 Identities = 43/154 (27%), Positives = 60/154 (38%), Gaps = 11/154 (7%)
 Frame = +2

Query: 2   SLPPPLQDCNNSQGHGPSVSLCQSRDTSVHPSMAATVGNGKDREEAEVHRNQRQGGXXXX 181
           S P P +    S G GP  SL ++ D ++   MAA  GNGK    A   +    GG    
Sbjct: 55  SKPAPAKGTAKSPGKGPDKSLDKALDAAI--DMAA--GNGK--ATAAPAKAADSGGAAIV 108

Query: 182 XXXXXXX----XXXXPSFRVYYGVSSAGAVPFLWESQPG--TPK--NAASDTAMP---PL 328
                          PS +  +   + GA P     +PG  TP+  N    +A P   P+
Sbjct: 109 SPTTPAAPEPPTAVPPSPQAPHPGMAPGARPGP-VPKPGIRTPRVGNNPFSSAQPADRPI 167

Query: 329 TPPPSYYSAAAKKHAPRKGKAAGGRKFRPSRILG 430
             PP+     A+   PR G + G    RP   +G
Sbjct: 168 PRPPAPRPGTARPGVPRPGASPGSMPPRPGGAVG 201

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>TTC16_MACFA (Q95LZ5) Tetratricopeptide repeat protein 16 (TPR repeat protein|
           16)
          Length = 872

 Score = 31.2 bits (69), Expect = 1.2
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +2

Query: 308 DTAMPPLTPPPSYYSAAAKKHAPRKGKAAGGRKFRPSRI 424
           +T+  P   P    +  + +  PRK KAA GR +RPS++
Sbjct: 749 ETSQGPRQEPSKTKTTRSPRQRPRKVKAARGRSWRPSKL 787

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>MBD6_HUMAN (Q96DN6) Methyl-CpG-binding domain protein 6 (Methyl-CpG-binding|
           protein MBD6)
          Length = 1003

 Score = 27.3 bits (59), Expect(2) = 1.3
 Identities = 20/61 (32%), Positives = 26/61 (42%)
 Frame = +2

Query: 239 VSSAGAVPFLWESQPGTPKNAASDTAMPPLTPPPSYYSAAAKKHAPRKGKAAGGRKFRPS 418
           V   GA PFL  S      +AA+    PPL PP +      +  AP    A+     RPS
Sbjct: 310 VEGPGAPPFLASSL----LSAAAKAQHPPLPPPSTLQGRRPRAQAP---SASHSSSLRPS 362

Query: 419 R 421
           +
Sbjct: 363 Q 363



 Score = 22.3 bits (46), Expect(2) = 1.3
 Identities = 10/23 (43%), Positives = 11/23 (47%)
 Frame = +3

Query: 186 CSPGTAPPRRRPSGSTTACPPPA 254
           CS    PP   PS +  A P PA
Sbjct: 263 CSDALTPPPLPPSNNLPAHPGPA 285

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>VGLZ_EHV1K (P32515) Glycoprotein precursor|
          Length = 383

 Score = 30.8 bits (68), Expect = 1.6
 Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 8/52 (15%)
 Frame = +2

Query: 284 GTPKNAASDTAMPPLT---PPPSYYSAA-----AKKHAPRKGKAAGGRKFRP 415
           GT  +++S T  PP T   PP S ++++     A+KHA      AGGR+  P
Sbjct: 45  GTTNSSSSPTTSPPTTSSSPPTSTHTSSPSTANAQKHAGHHRGRAGGRRGSP 96

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>YLPM1_MOUSE (Q9R0I7) YLP motif-containing protein 1 (Nuclear protein ZAP3)|
          Length = 1386

 Score = 30.8 bits (68), Expect = 1.6
 Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 7/49 (14%)
 Frame = +2

Query: 251 GAVPFLWESQPGTPK------NAASDTAMPPLTPPPSYY-SAAAKKHAP 376
           G VP   ES P +P          S + MPP  PPPSYY  ++A+ + P
Sbjct: 138 GLVPMELESPPESPPVPPGSYMPPSQSYMPPPQPPPSYYPPSSAQPYLP 186

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>YLPM1_HUMAN (P49750) YLP motif-containing protein 1 (Nuclear protein ZAP3)|
           (ZAP113)
          Length = 1951

 Score = 30.4 bits (67), Expect = 2.1
 Identities = 17/39 (43%), Positives = 19/39 (48%), Gaps = 6/39 (15%)
 Frame = +2

Query: 251 GAVPFLWESQPGTPK------NAASDTAMPPLTPPPSYY 349
           G VP   ES P +P          S + MPP  PPPSYY
Sbjct: 137 GLVPMELESPPESPPVPPGSYMPPSQSYMPPPQPPPSYY 175

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>GRB10_MOUSE (Q60760) Growth factor receptor-bound protein 10 (GRB10 adaptor|
           protein)
          Length = 621

 Score = 30.4 bits (67), Expect = 2.1
 Identities = 13/49 (26%), Positives = 24/49 (48%)
 Frame = +2

Query: 260 PFLWESQPGTPKNAASDTAMPPLTPPPSYYSAAAKKHAPRKGKAAGGRK 406
           P L  + PG+P + A  +  PP + PP+ +    +K  P +     G++
Sbjct: 87  PELTGAAPGSPPSVAPSSLPPPPSQPPAKHCGRCEKWIPGENTRGNGKR 135

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>TAF4_HUMAN (O00268) Transcription initiation factor TFIID subunit 4|
           (Transcription initiation factor TFIID 135 kDa subunit)
           (TAF(II)135) (TAFII-135) (TAFII135) (TAFII-130)
           (TAFII130)
          Length = 1085

 Score = 26.6 bits (57), Expect(2) = 2.1
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = +2

Query: 281 PGTPKNAASDTAMPPLTPPPSYYSAAAKKHAPRKGKAAGG 400
           PG P  A   TA P + PP +  +  +   AP    AAGG
Sbjct: 284 PGHP--AGPPTAAPAVPPPAAAQNGGSAGAAPAPAPAAGG 321



 Score = 22.3 bits (46), Expect(2) = 2.1
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +3

Query: 189 SPGTAPPRRRPSGSTTACPP 248
           +P  APP   P+ +T A PP
Sbjct: 265 APAAAPPPPPPAPATLARPP 284

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>POLN_RUBVT (P13889) Nonstructural polyprotein [Contains: Protease (EC|
           3.4.22.-) (p150); RNA-directed RNA polymerase/helicase
           (EC 2.7.7.48) (EC 3.6.1.-) (p90)]
          Length = 2115

 Score = 30.0 bits (66), Expect = 2.8
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -2

Query: 96  DGWTDVSLLWHRETEGPCPCELLQSWRGGGS 4
           D W D+ + WH + +G CP +     RG G+
Sbjct: 205 DDWDDLGIAWHLDHDGGCPADC----RGAGA 231

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>POLN_RUBVM (Q86500) Nonstructural polyprotein [Contains: Protease (EC|
           3.4.22.-) (p150); RNA-directed RNA polymerase/helicase
           (EC 2.7.7.48) (EC 3.6.1.-) (p90)]
          Length = 2115

 Score = 30.0 bits (66), Expect = 2.8
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -2

Query: 96  DGWTDVSLLWHRETEGPCPCELLQSWRGGGS 4
           D W D+ + WH + +G CP +     RG G+
Sbjct: 205 DDWDDLGIAWHLDHDGGCPADC----RGAGA 231

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>IF2_MYCLE (Q9Z5I9) Translation initiation factor IF-2|
          Length = 924

 Score = 30.0 bits (66), Expect = 2.8
 Identities = 17/44 (38%), Positives = 21/44 (47%)
 Frame = +2

Query: 290 PKNAASDTAMPPLTPPPSYYSAAAKKHAPRKGKAAGGRKFRPSR 421
           P ++A   A P   PP    SA+    +PR G A GG   RP R
Sbjct: 181 PFSSAQSVARPIPRPPAPRPSASPSSMSPRPGGAVGGGGPRPPR 224

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>CS016_HUMAN (Q8ND99) Protein C19orf16|
          Length = 567

 Score = 25.0 bits (53), Expect(2) = 2.9
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +3

Query: 192 PGTAPPRRRPSGSTTACPPP 251
           PG  P ++ PSG  T+C  P
Sbjct: 47  PGPPPCQKAPSGPVTSCKAP 66



 Score = 23.5 bits (49), Expect(2) = 2.9
 Identities = 16/44 (36%), Positives = 17/44 (38%)
 Frame = +2

Query: 260 PFLWESQPGTPKNAASDTAMPPLTPPPSYYSAAAKKHAPRKGKA 391
           PFL +     P   AS    PP   PP    A A    PRK  A
Sbjct: 66  PFLVDQSQKLPAVPASSWKPPPGLAPPQ--KAPAASAPPRKAPA 107

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>MMPLB_STRCO (O54101) Putative membrane protein SCO5905|
          Length = 847

 Score = 29.6 bits (65), Expect = 3.6
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +2

Query: 266 LWESQPGTPKNAASDTAMPPLTPPPSYYSA 355
           LW ++PGTP+  ++ T+ PP    P+  +A
Sbjct: 704 LWPARPGTPQTPSTPTSEPPSADAPAARAA 733

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>SRRM1_CHICK (Q5ZMJ9) Serine/arginine repetitive matrix protein 1|
          Length = 888

 Score = 29.6 bits (65), Expect = 3.6
 Identities = 14/26 (53%), Positives = 15/26 (57%)
 Frame = +3

Query: 189 SPGTAPPRRRPSGSTTACPPPARCRS 266
           SP  +PPRRR   S  A PPP   RS
Sbjct: 386 SPSASPPRRRHRPSPPASPPPKPRRS 411

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>CS007_HUMAN (Q9UPT8) Zinc finger CCCH-type domain-containing protein C19orf7|
          Length = 1303

 Score = 29.6 bits (65), Expect = 3.6
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +2

Query: 272 ESQPGTPKNAASDTAMPPLTPPPS 343
           E+ PGTP    S++  PP  PPPS
Sbjct: 2   EAAPGTPPPPPSESPPPPSPPPPS 25

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>BAT3_MOUSE (Q9Z1R2) Large proline-rich protein BAT3 (HLA-B-associated|
           transcript 3)
          Length = 1154

 Score = 29.6 bits (65), Expect = 3.6
 Identities = 19/57 (33%), Positives = 24/57 (42%), Gaps = 8/57 (14%)
 Frame = +2

Query: 254 AVPFLWESQPGTPKNA--------ASDTAMPPLTPPPSYYSAAAKKHAPRKGKAAGG 400
           A P +  + PG P           AS TA PP  PPP    A  ++  P  G  +GG
Sbjct: 650 ASPTITVAMPGVPAFLQGMTDFLQASQTAPPPPPPPPPPPPAPEQQSTPPPGSPSGG 706

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>TTC16_HUMAN (Q8NEE8) Tetratricopeptide repeat protein 16 (TPR repeat protein|
           16)
          Length = 873

 Score = 29.3 bits (64), Expect = 4.7
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +2

Query: 323 PLTPPPSYYSAAAKKHAPRKGKAAGGRKFRPSRI 424
           P   P    +  + +  PRK KAA GR +RPS++
Sbjct: 755 PRQEPSKTKTTRSPRQRPRKVKAARGRSWRPSKV 788

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>POLN_HEVBU (P29324) Non-structural polyprotein (EC 2.7.7.48) (RNA-directed RNA|
           polymerase/Helicase)
          Length = 1693

 Score = 29.3 bits (64), Expect = 4.7
 Identities = 20/56 (35%), Positives = 24/56 (42%), Gaps = 3/56 (5%)
 Frame = +2

Query: 239 VSSAGAVPFLWESQPGTPKNAASDTAMPPLTPP---PSYYSAAAKKHAPRKGKAAG 397
           VSS       + S+P  P  AA+ T   PL PP   PS   +A     P  G  AG
Sbjct: 711 VSSPARPDLGFMSEPSIPSRAATPTLAAPLPPPAPDPSPPPSAPALAEPASGATAG 766

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>RANB9_HUMAN (Q96S59) Ran-binding protein 9 (RanBP9) (RanBP7) (Ran-binding|
           protein M) (RanBPM) (BPM90) (BPM-L)
          Length = 729

 Score = 29.3 bits (64), Expect = 4.7
 Identities = 24/70 (34%), Positives = 30/70 (42%), Gaps = 4/70 (5%)
 Frame = +2

Query: 236 GVSSAGAVPFLWESQPGTPKNAASDTAMPPLTPPPSYYSAAAKKHAPRKGKAAG----GR 403
           G+ +A A   L    P  P  AA     PP  PP S  + A+   AP  G AAG    G 
Sbjct: 59  GLGAAAAALLLHPPPPPPPATAAPPPPPPPPPPPASAAAPASGPPAP-PGLAAGPGPAGG 117

Query: 404 KFRPSRILGS 433
              P+ + GS
Sbjct: 118 APTPALVAGS 127

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>IAA4_ORYSA (Q59AF4) Auxin-responsive protein IAA4 (Indoleacetic acid-induced|
           protein 4)
          Length = 203

 Score = 29.3 bits (64), Expect = 4.7
 Identities = 30/127 (23%), Positives = 45/127 (35%)
 Frame = +2

Query: 47  GPSVSLCQSRDTSVHPSMAATVGNGKDREEAEVHRNQRQGGXXXXXXXXXXXXXXXPSFR 226
           G  +S   S D+S HP+++ T      R +     + R G                    
Sbjct: 6   GGGMSPSSSMDSSTHPALSTTSSAATARRDLST--DLRLGLSLSTSSSSSL--------- 54

Query: 227 VYYGVSSAGAVPFLWESQPGTPKNAASDTAMPPLTPPPSYYSAAAKKHAPRKGKAAGGRK 406
               + +A A     +S P TP+N+      PP+ P          + A +K  AAGG  
Sbjct: 55  ----LQAAAAAAAADDSIPSTPRNSQVHADWPPIKP--------FLRSALQKASAAGGGG 102

Query: 407 FRPSRIL 427
            R  R L
Sbjct: 103 ARRRRTL 109

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>AB1IP_MOUSE (Q8R5A3) Amyloid beta A4 precursor protein-binding family B member|
           1-interacting protein (APBB1-interacting protein 1)
           (Proline-rich EVH1 ligand 1) (PREL-1) (Proline-rich
           protein 48)
          Length = 670

 Score = 29.3 bits (64), Expect = 4.7
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +2

Query: 281 PGTPKNAASDTAMPPLTPPPSYYSAAAKKHAP 376
           P  P  A  D+A+PP  PPP   S    K +P
Sbjct: 594 PPPPPAAVEDSALPPPPPPPPCLSQEITKSSP 625

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>YCAD_SHIFL (Q83RZ5) MFS-type transporter protein ycaD|
          Length = 382

 Score = 29.3 bits (64), Expect = 4.7
 Identities = 11/16 (68%), Positives = 14/16 (87%)
 Frame = -3

Query: 77  LCSGTERRRGRVLASY 30
           +CSGT R RGR+LA+Y
Sbjct: 120 MCSGTSRNRGRLLAAY 135

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>YCAD_ECOLI (P21503) MFS-type transporter protein ycaD|
          Length = 382

 Score = 29.3 bits (64), Expect = 4.7
 Identities = 11/16 (68%), Positives = 14/16 (87%)
 Frame = -3

Query: 77  LCSGTERRRGRVLASY 30
           +CSGT R RGR+LA+Y
Sbjct: 120 MCSGTSRNRGRLLAAY 135

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>YCAD_ECOL6 (Q8FJC1) MFS-type transporter protein ycaD|
          Length = 382

 Score = 29.3 bits (64), Expect = 4.7
 Identities = 11/16 (68%), Positives = 14/16 (87%)
 Frame = -3

Query: 77  LCSGTERRRGRVLASY 30
           +CSGT R RGR+LA+Y
Sbjct: 120 MCSGTSRNRGRLLAAY 135

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>YCAD_ECO57 (Q8XEB7) MFS-type transporter protein ycaD|
          Length = 382

 Score = 29.3 bits (64), Expect = 4.7
 Identities = 11/16 (68%), Positives = 14/16 (87%)
 Frame = -3

Query: 77  LCSGTERRRGRVLASY 30
           +CSGT R RGR+LA+Y
Sbjct: 120 MCSGTSRNRGRLLAAY 135

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>SRRM1_MOUSE (Q52KI8) Serine/arginine repetitive matrix protein 1|
           (Plenty-of-prolines 101)
          Length = 946

 Score = 29.3 bits (64), Expect = 4.7
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +3

Query: 189 SPGTAPPRRRPSGSTTACPPP 251
           SP  +PPRRR   S+ A PPP
Sbjct: 387 SPSASPPRRRHRPSSPATPPP 407

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>IF2_NOCFA (Q5YSC6) Translation initiation factor IF-2|
          Length = 969

 Score = 29.3 bits (64), Expect = 4.7
 Identities = 19/52 (36%), Positives = 25/52 (48%)
 Frame = +2

Query: 278 QPGTPKNAASDTAMPPLTPPPSYYSAAAKKHAPRKGKAAGGRKFRPSRILGS 433
           +PG P+   S  +MPP   P      A  +  PR G +AGGR  RP    G+
Sbjct: 239 RPGGPR--PSPGSMPPRPNP-----GAMPQRTPRPGPSAGGRPGRPGGAPGA 283

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>CS007_MOUSE (Q6ZPZ3) Zinc finger CCCH-type domain-containing protein C19orf7|
           homolog
          Length = 1304

 Score = 29.3 bits (64), Expect = 4.7
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +2

Query: 272 ESQPGTPKNAASDTAMPPLTPPPS 343
           E+ PGTP    S++  PP  PPPS
Sbjct: 2   EAVPGTPPPPPSESPPPPSPPPPS 25

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>KLF5_HUMAN (Q13887) Krueppel-like factor 5 (Intestinal-enriched krueppel-like|
           factor) (Colon krueppel-like factor) (Transcription
           factor BTEB2) (Basic transcription element-binding
           protein 2) (BTE-binding protein 2) (GC box-binding
           protein 2)
          Length = 457

 Score = 28.9 bits (63), Expect = 6.2
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = +2

Query: 275 SQPGTPKNAASDTAMPPLTPPPSYYSAAAKKHA 373
           S+PG+P   A    +  LTPPPSY +  A K A
Sbjct: 307 SEPGSPDRQAE--MLQNLTPPPSYAATIASKLA 337

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>TEGU_EBV (P03186) Large tegument protein|
          Length = 3149

 Score = 28.9 bits (63), Expect = 6.2
 Identities = 17/57 (29%), Positives = 22/57 (38%)
 Frame = +2

Query: 236  GVSSAGAVPFLWESQPGTPKNAASDTAMPPLTPPPSYYSAAAKKHAPRKGKAAGGRK 406
            GV+SA   P    S   TP N  +  A PPL    +      +K+    G   G  K
Sbjct: 1136 GVASAPGAPISPASPSATPANHDNPEATPPLADTAALTIPVIEKYIANAGSIVGAAK 1192

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>IE63_MCMVS (Q69154) Transcriptional regulator IE63 homolog (Protein UL69)|
          Length = 841

 Score = 28.9 bits (63), Expect = 6.2
 Identities = 15/48 (31%), Positives = 22/48 (45%)
 Frame = +2

Query: 272 ESQPGTPKNAASDTAMPPLTPPPSYYSAAAKKHAPRKGKAAGGRKFRP 415
           + QP T    +S TA  P  P P   S A+++  P K  ++  R   P
Sbjct: 598 QQQPETTSKESSKTAAMPPPPSPCSPSPASRERRPSKSPSSSPRPHDP 645

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>KLF5_MOUSE (Q9Z0Z7) Krueppel-like factor 5 (Intestinal-enriched krueppel-like|
           factor) (Transcription factor BTEB2) (Basic
           transcription element-binding protein 2) (BTE-binding
           protein 2)
          Length = 446

 Score = 28.9 bits (63), Expect = 6.2
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = +2

Query: 275 SQPGTPKNAASDTAMPPLTPPPSYYSAAAKKHA 373
           S+PG+P   A    +  LTPPPSY +  A K A
Sbjct: 296 SEPGSPDRQAE--MLQNLTPPPSYAATIASKLA 326

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>ADRB1_MACMU (P47899) Beta-1 adrenergic receptor (Beta-1 adrenoceptor) (Beta-1|
           adrenoreceptor)
          Length = 480

 Score = 28.5 bits (62), Expect = 8.1
 Identities = 18/51 (35%), Positives = 27/51 (52%)
 Frame = +2

Query: 275 SQPGTPKNAASDTAMPPLTPPPSYYSAAAKKHAPRKGKAAGGRKFRPSRIL 427
           ++P +P  + S + +P   P P   +AAA   AP     AG R  RPSR++
Sbjct: 270 ARPPSPSPSPSPSPVPAPPPGPPRPAAAAATTAPLVNGRAGKR--RPSRLV 318

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>POLN_HEVPA (P33424) Non-structural polyprotein (EC 2.7.7.48) (RNA-directed RNA|
           polymerase/Helicase)
          Length = 1693

 Score = 28.5 bits (62), Expect = 8.1
 Identities = 18/50 (36%), Positives = 22/50 (44%)
 Frame = +2

Query: 275 SQPGTPKNAASDTAMPPLTPPPSYYSAAAKKHAPRKGKAAGGRKFRPSRI 424
           S+P  P  AA+ T   PL PP    S      AP +G+ A G   R   I
Sbjct: 723 SEPSIPSRAATPTPAAPLPPPAPDPSPTLS--APARGEPAPGATARAPAI 770

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>SGS3_DROSI (P13729) Salivary glue protein Sgs-3 precursor|
          Length = 217

 Score = 28.5 bits (62), Expect = 8.1
 Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = +3

Query: 189 SPGTAPPRRR-PSGSTTACPPPARCRSCG 272
           +P T P +   P+ +TT  P P  C+SCG
Sbjct: 147 TPKTKPTKHTTPTTTTTTTPKPCGCKSCG 175

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>SETD8_MOUSE (Q2YDW7) Histone-lysine N-methyltransferase, H4 lysine-20 specific|
           (EC 2.1.1.43) (Histone H4-K20 methyltransferase)
           (H4-K20-HMTase) (SET domain containing lysine
           methyltransferase 8) (SET domain-containing protein 8)
          Length = 349

 Score = 28.5 bits (62), Expect = 8.1
 Identities = 23/52 (44%), Positives = 24/52 (46%), Gaps = 15/52 (28%)
 Frame = +2

Query: 296 NAASDTAMPPLTPPPSYYS---AAAK---------KHAPRK---GKAAGGRK 406
           N  S+ A PP TPPPS  S   A AK         K APRK   GK    RK
Sbjct: 127 NQKSEAAEPPKTPPPSCDSTNVAVAKQALKKSLKGKQAPRKKSQGKTQQNRK 178

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>LIX1L_RAT (Q5PQQ7) LIX1-like protein|
          Length = 338

 Score = 28.5 bits (62), Expect = 8.1
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = +2

Query: 236 GVSSAGAVPFLWESQPGTPKNAASDTAMPPLTPPP 340
           GV   G +  L     G P +AA+  A PP  PPP
Sbjct: 14  GVGGRGTLRALRPGVTGAPTSAATPPAGPPPAPPP 48

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>YG3D_YEAST (P53281) Protein YGR136W|
          Length = 241

 Score = 28.5 bits (62), Expect = 8.1
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +2

Query: 263 FLWESQPGTPKNAASDTAMPPLTPPPSYYSAAAK 364
           F   + P + + A+S T   P  PPPSY  AA++
Sbjct: 111 FTRSASPKSAEAASSSTVSRPSVPPPSYEPAASQ 144

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>CSKI2_MOUSE (Q8VHK1) Caskin-2|
          Length = 1201

 Score = 28.5 bits (62), Expect = 8.1
 Identities = 19/60 (31%), Positives = 25/60 (41%), Gaps = 3/60 (5%)
 Frame = +2

Query: 281 PGTPKN---AASDTAMPPLTPPPSYYSAAAKKHAPRKGKAAGGRKFRPSRILGSILMATR 451
           PG P+     A   A PP  P P   S +  +  P +G+A G  +      LGS    TR
Sbjct: 771 PGVPRAFSYLAGSPAAPPDPPRPKRRSHSLSRPGPAEGEAEGEAEGPVGSALGSYATLTR 830


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,527,601
Number of Sequences: 219361
Number of extensions: 715360
Number of successful extensions: 4288
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 3614
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4245
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2735358828
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result