ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baet07h12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 151 1e-33
2dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 151 1e-33
3gb|AC137699.1| Genomic sequence for Oryza sativa, Nipponbare str... 151 1e-33
4dbj|AK099791.1| Oryza sativa (japonica cultivar-group) cDNA clon... 151 1e-33
5ref|NM_191406.1| Oryza sativa (japonica cultivar-group), predic... 101 1e-18
6dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 101 1e-18
7dbj|AP003106.1| Oryza sativa (japonica cultivar-group) genomic D... 101 1e-18
8dbj|AP003371.5| Oryza sativa (japonica cultivar-group) genomic D... 101 1e-18
9dbj|AK105465.1| Oryza sativa (japonica cultivar-group) cDNA clon... 101 1e-18
10dbj|AK101775.1| Oryza sativa (japonica cultivar-group) cDNA clon... 101 1e-18
11ref|NM_115014.2| Arabidopsis thaliana kinase AT3G51550 mRNA, com... 62 9e-07
12emb|AL133452.1|ATF26O13 Arabidopsis thaliana DNA chromosome 3, B... 62 9e-07
13emb|AL132968.1|ATT18N14 Arabidopsis thaliana DNA chromosome 3, B... 62 9e-07
14emb|BX824707.1|CNS0A7VC Arabidopsis thaliana Full-length cDNA Co... 62 9e-07
15emb|AJ242671.1|ATH242671 Arabidopsis thaliana mRNA for putative ... 62 9e-07
16ref|XM_476281.1| Oryza sativa (japonica cultivar-group), predic... 56 5e-05
17gb|AC130609.2| Oryza sativa (japonica cultivar-group) chromosome... 56 5e-05
18gb|AC135923.2| Oryza sativa (japonica cultivar-group) chromosome... 56 5e-05
19gb|AY035053.1| Arabidopsis thaliana putative receptor-protein ki... 56 5e-05
20dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 56 5e-05
21dbj|AK121335.1| Oryza sativa (japonica cultivar-group) cDNA clon... 56 5e-05
22dbj|AK100616.1| Oryza sativa (japonica cultivar-group) cDNA clon... 56 5e-05
23gb|AY107387.1| Zea mays PCO149313 mRNA sequence 52 8e-04
24dbj|AB088042.1| Vibrio parahaemolyticus genes for probable two-c... 44 0.20
25emb|AL359881.28| Human DNA sequence from clone RP11-338N10 on ch... 40 3.1
26emb|AL158040.14| Human DNA sequence from clone RP11-360G10 on ch... 40 3.1
27dbj|BA000032.2| Vibrio parahaemolyticus RIMD 2210633 DNA, chromo... 40 3.1

>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  151 bits (76), Expect = 1e-33
 Identities = 196/236 (83%)
 Strand = Plus / Plus

                                                                            
Query: 9        tggttggctgccgttgtcgctgtatggcaattcacacacttcaagctcagacaagtcgca 68
                ||||||| ||||| | || || |||||||| ||||||||||| ||||||| |||||| ||
Sbjct: 12283476 tggttggttgccgctctcactttatggcaactcacacacttccagctcagccaagtcaca 12283535

                                                                            
Query: 69       tgctactgggagtattgcttcatctttgccatccaacctatgccgccatttctcctttgc 128
                  ||||||||||   |||||| ||||||||||||||||| |||||||||||||| |||| 
Sbjct: 12283536 cactactgggagccatgcttcgtctttgccatccaacctgtgccgccatttctcatttgt 12283595

                                                                            
Query: 129      agagatcaaggctgcaacgaagaactttgacgagtcacggatccttggtgttggtgggtt 188
                 |||||||||||||| || || |||||||| ||||| |   ||||||| || ||||| ||
Sbjct: 12283596 ggagatcaaggctgcgacaaacaactttgatgagtccctcctccttggcgtgggtggttt 12283655

                                                                        
Query: 189      cggtaaagttcaccagggagagatcgatgggggctcaactaaggtggctatcaagc 244
                 ||||||||| |||  |||||||| || || ||  |||| ||||||||||||||||
Sbjct: 12283656 tggtaaagtttaccgtggagagattgacggaggagcaaccaaggtggctatcaagc 12283711



to top

>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  151 bits (76), Expect = 1e-33
 Identities = 196/236 (83%)
 Strand = Plus / Plus

                                                                            
Query: 9        tggttggctgccgttgtcgctgtatggcaattcacacacttcaagctcagacaagtcgca 68
                ||||||| ||||| | || || |||||||| ||||||||||| ||||||| |||||| ||
Sbjct: 12280239 tggttggttgccgctctcactttatggcaactcacacacttccagctcagccaagtcaca 12280298

                                                                            
Query: 69       tgctactgggagtattgcttcatctttgccatccaacctatgccgccatttctcctttgc 128
                  ||||||||||   |||||| ||||||||||||||||| |||||||||||||| |||| 
Sbjct: 12280299 cactactgggagccatgcttcgtctttgccatccaacctgtgccgccatttctcatttgt 12280358

                                                                            
Query: 129      agagatcaaggctgcaacgaagaactttgacgagtcacggatccttggtgttggtgggtt 188
                 |||||||||||||| || || |||||||| ||||| |   ||||||| || ||||| ||
Sbjct: 12280359 ggagatcaaggctgcgacaaacaactttgatgagtccctcctccttggcgtgggtggttt 12280418

                                                                        
Query: 189      cggtaaagttcaccagggagagatcgatgggggctcaactaaggtggctatcaagc 244
                 ||||||||| |||  |||||||| || || ||  |||| ||||||||||||||||
Sbjct: 12280419 tggtaaagtttaccgtggagagattgacggaggagcaaccaaggtggctatcaagc 12280474



to top

>gb|AC137699.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBb0029K10, from chromosome 3, complete sequence
          Length = 135940

 Score =  151 bits (76), Expect = 1e-33
 Identities = 196/236 (83%)
 Strand = Plus / Plus

                                                                         
Query: 9     tggttggctgccgttgtcgctgtatggcaattcacacacttcaagctcagacaagtcgca 68
             ||||||| ||||| | || || |||||||| ||||||||||| ||||||| |||||| ||
Sbjct: 53009 tggttggttgccgctctcactttatggcaactcacacacttccagctcagccaagtcaca 53068

                                                                         
Query: 69    tgctactgggagtattgcttcatctttgccatccaacctatgccgccatttctcctttgc 128
               ||||||||||   |||||| ||||||||||||||||| |||||||||||||| |||| 
Sbjct: 53069 cactactgggagccatgcttcgtctttgccatccaacctgtgccgccatttctcatttgt 53128

                                                                         
Query: 129   agagatcaaggctgcaacgaagaactttgacgagtcacggatccttggtgttggtgggtt 188
              |||||||||||||| || || |||||||| ||||| |   ||||||| || ||||| ||
Sbjct: 53129 ggagatcaaggctgcgacaaacaactttgatgagtccctcctccttggcgtgggtggttt 53188

                                                                     
Query: 189   cggtaaagttcaccagggagagatcgatgggggctcaactaaggtggctatcaagc 244
              ||||||||| |||  |||||||| || || ||  |||| ||||||||||||||||
Sbjct: 53189 tggtaaagtttaccgtggagagattgacggaggagcaaccaaggtggctatcaagc 53244



to top

>dbj|AK099791.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013097C16, full
            insert sequence
          Length = 3171

 Score =  151 bits (76), Expect = 1e-33
 Identities = 196/236 (83%)
 Strand = Plus / Plus

                                                                        
Query: 9    tggttggctgccgttgtcgctgtatggcaattcacacacttcaagctcagacaagtcgca 68
            ||||||| ||||| | || || |||||||| ||||||||||| ||||||| |||||| ||
Sbjct: 1715 tggttggttgccgctctcactttatggcaactcacacacttccagctcagccaagtcaca 1774

                                                                        
Query: 69   tgctactgggagtattgcttcatctttgccatccaacctatgccgccatttctcctttgc 128
              ||||||||||   |||||| ||||||||||||||||| |||||||||||||| |||| 
Sbjct: 1775 cactactgggagccatgcttcgtctttgccatccaacctgtgccgccatttctcatttgt 1834

                                                                        
Query: 129  agagatcaaggctgcaacgaagaactttgacgagtcacggatccttggtgttggtgggtt 188
             |||||||||||||| || || |||||||| ||||| |   ||||||| || ||||| ||
Sbjct: 1835 ggagatcaaggctgcgacaaacaactttgatgagtccctcctccttggcgtgggtggttt 1894

                                                                    
Query: 189  cggtaaagttcaccagggagagatcgatgggggctcaactaaggtggctatcaagc 244
             ||||||||| |||  |||||||| || || ||  |||| ||||||||||||||||
Sbjct: 1895 tggtaaagtttaccgtggagagattgacggaggagcaaccaaggtggctatcaagc 1950



to top

>ref|NM_191406.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2691

 Score =  101 bits (51), Expect = 1e-18
 Identities = 138/167 (82%)
 Strand = Plus / Plus

                                                                        
Query: 31   tatggcaattcacacacttcaagctcagacaagtcgcatgctactgggagtattgcttca 90
            |||||||| |||||| | ||  |||||| ||| || ||| ||||||||||    ||||||
Sbjct: 1504 tatggcaactcacactcatctggctcagccaaatcacatactactgggagctacgcttca 1563

                                                                        
Query: 91   tctttgccatccaacctatgccgccatttctcctttgcagagatcaaggctgcaacgaag 150
            ||  ||||||||||||| |||||||||||||| ||||| ||||||||||||||||| || 
Sbjct: 1564 tcgctgccatccaacctgtgccgccatttctcatttgcggagatcaaggctgcaacaaac 1623

                                                           
Query: 151  aactttgacgagtcacggatccttggtgttggtgggttcggtaaagt 197
            ||||| || || || |   |||||||||| ||||| |||||||||||
Sbjct: 1624 aacttcgatgaatccctcctccttggtgtgggtggtttcggtaaagt 1670



to top

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  101 bits (51), Expect = 1e-18
 Identities = 138/167 (82%)
 Strand = Plus / Plus

                                                                            
Query: 31       tatggcaattcacacacttcaagctcagacaagtcgcatgctactgggagtattgcttca 90
                |||||||| |||||| | ||  |||||| ||| || ||| ||||||||||    ||||||
Sbjct: 32456867 tatggcaactcacactcatctggctcagccaaatcacatactactgggagctacgcttca 32456926

                                                                            
Query: 91       tctttgccatccaacctatgccgccatttctcctttgcagagatcaaggctgcaacgaag 150
                ||  ||||||||||||| |||||||||||||| ||||| ||||||||||||||||| || 
Sbjct: 32456927 tcgctgccatccaacctgtgccgccatttctcatttgcggagatcaaggctgcaacaaac 32456986

                                                               
Query: 151      aactttgacgagtcacggatccttggtgttggtgggttcggtaaagt 197
                ||||| || || || |   |||||||||| ||||| |||||||||||
Sbjct: 32456987 aacttcgatgaatccctcctccttggtgtgggtggtttcggtaaagt 32457033



to top

>dbj|AP003106.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0665A11
          Length = 166421

 Score =  101 bits (51), Expect = 1e-18
 Identities = 138/167 (82%)
 Strand = Plus / Plus

                                                                         
Query: 31    tatggcaattcacacacttcaagctcagacaagtcgcatgctactgggagtattgcttca 90
             |||||||| |||||| | ||  |||||| ||| || ||| ||||||||||    ||||||
Sbjct: 44388 tatggcaactcacactcatctggctcagccaaatcacatactactgggagctacgcttca 44447

                                                                         
Query: 91    tctttgccatccaacctatgccgccatttctcctttgcagagatcaaggctgcaacgaag 150
             ||  ||||||||||||| |||||||||||||| ||||| ||||||||||||||||| || 
Sbjct: 44448 tcgctgccatccaacctgtgccgccatttctcatttgcggagatcaaggctgcaacaaac 44507

                                                            
Query: 151   aactttgacgagtcacggatccttggtgttggtgggttcggtaaagt 197
             ||||| || || || |   |||||||||| ||||| |||||||||||
Sbjct: 44508 aacttcgatgaatccctcctccttggtgtgggtggtttcggtaaagt 44554



to top

>dbj|AP003371.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:B1143G03
          Length = 137770

 Score =  101 bits (51), Expect = 1e-18
 Identities = 138/167 (82%)
 Strand = Plus / Plus

                                                                          
Query: 31     tatggcaattcacacacttcaagctcagacaagtcgcatgctactgggagtattgcttca 90
              |||||||| |||||| | ||  |||||| ||| || ||| ||||||||||    ||||||
Sbjct: 136364 tatggcaactcacactcatctggctcagccaaatcacatactactgggagctacgcttca 136423

                                                                          
Query: 91     tctttgccatccaacctatgccgccatttctcctttgcagagatcaaggctgcaacgaag 150
              ||  ||||||||||||| |||||||||||||| ||||| ||||||||||||||||| || 
Sbjct: 136424 tcgctgccatccaacctgtgccgccatttctcatttgcggagatcaaggctgcaacaaac 136483

                                                             
Query: 151    aactttgacgagtcacggatccttggtgttggtgggttcggtaaagt 197
              ||||| || || || |   |||||||||| ||||| |||||||||||
Sbjct: 136484 aacttcgatgaatccctcctccttggtgtgggtggtttcggtaaagt 136530



to top

>dbj|AK105465.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-126-A03, full
           insert sequence
          Length = 1761

 Score =  101 bits (51), Expect = 1e-18
 Identities = 138/167 (82%)
 Strand = Plus / Plus

                                                                       
Query: 31  tatggcaattcacacacttcaagctcagacaagtcgcatgctactgggagtattgcttca 90
           |||||||| |||||| | ||  |||||| ||| || ||| ||||||||||    ||||||
Sbjct: 317 tatggcaactcacactcatctggctcagccaaatcacatactactgggagctacgcttca 376

                                                                       
Query: 91  tctttgccatccaacctatgccgccatttctcctttgcagagatcaaggctgcaacgaag 150
           ||  ||||||||||||| |||||||||||||| ||||| ||||||||||||||||| || 
Sbjct: 377 tcgctgccatccaacctgtgccgccatttctcatttgcggagatcaaggctgcaacaaac 436

                                                          
Query: 151 aactttgacgagtcacggatccttggtgttggtgggttcggtaaagt 197
           ||||| || || || |   |||||||||| ||||| |||||||||||
Sbjct: 437 aacttcgatgaatccctcctccttggtgtgggtggtttcggtaaagt 483



to top

>dbj|AK101775.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033064M23, full
            insert sequence
          Length = 3155

 Score =  101 bits (51), Expect = 1e-18
 Identities = 138/167 (82%)
 Strand = Plus / Plus

                                                                        
Query: 31   tatggcaattcacacacttcaagctcagacaagtcgcatgctactgggagtattgcttca 90
            |||||||| |||||| | ||  |||||| ||| || ||| ||||||||||    ||||||
Sbjct: 1734 tatggcaactcacactcatctggctcagccaaatcacatactactgggagctacgcttca 1793

                                                                        
Query: 91   tctttgccatccaacctatgccgccatttctcctttgcagagatcaaggctgcaacgaag 150
            ||  ||||||||||||| |||||||||||||| ||||| ||||||||||||||||| || 
Sbjct: 1794 tcgctgccatccaacctgtgccgccatttctcatttgcggagatcaaggctgcaacaaac 1853

                                                           
Query: 151  aactttgacgagtcacggatccttggtgttggtgggttcggtaaagt 197
            ||||| || || || |   |||||||||| ||||| |||||||||||
Sbjct: 1854 aacttcgatgaatccctcctccttggtgtgggtggtttcggtaaagt 1900



to top

>ref|NM_115014.2| Arabidopsis thaliana kinase AT3G51550 mRNA, complete cds
          Length = 3103

 Score = 61.9 bits (31), Expect = 9e-07
 Identities = 70/83 (84%)
 Strand = Plus / Plus

                                                                        
Query: 109  tgccgccatttctcctttgcagagatcaaggctgcaacgaagaactttgacgagtcacgg 168
            ||||| || ||||| ||||| |||||||| ||||| || || |||||||| ||||| |||
Sbjct: 1683 tgccgtcacttctcgtttgctgagatcaaagctgccactaaaaactttgatgagtcccgg 1742

                                   
Query: 169  atccttggtgttggtgggttcgg 191
             | |||||||||||||| |||||
Sbjct: 1743 gtgcttggtgttggtggtttcgg 1765



to top

>emb|AL133452.1|ATF26O13 Arabidopsis thaliana DNA chromosome 3, BAC clone F26O13
          Length = 94349

 Score = 61.9 bits (31), Expect = 9e-07
 Identities = 70/83 (84%)
 Strand = Plus / Minus

                                                                         
Query: 109   tgccgccatttctcctttgcagagatcaaggctgcaacgaagaactttgacgagtcacgg 168
             ||||| || ||||| ||||| |||||||| ||||| || || |||||||| ||||| |||
Sbjct: 64725 tgccgtcacttctcgtttgctgagatcaaagctgccactaaaaactttgatgagtcccgg 64666

                                    
Query: 169   atccttggtgttggtgggttcgg 191
              | |||||||||||||| |||||
Sbjct: 64665 gtgcttggtgttggtggtttcgg 64643



to top

>emb|AL132968.1|ATT18N14 Arabidopsis thaliana DNA chromosome 3, BAC clone T18N14
          Length = 79867

 Score = 61.9 bits (31), Expect = 9e-07
 Identities = 70/83 (84%)
 Strand = Plus / Minus

                                                                       
Query: 109 tgccgccatttctcctttgcagagatcaaggctgcaacgaagaactttgacgagtcacgg 168
           ||||| || ||||| ||||| |||||||| ||||| || || |||||||| ||||| |||
Sbjct: 204 tgccgtcacttctcgtttgctgagatcaaagctgccactaaaaactttgatgagtcccgg 145

                                  
Query: 169 atccttggtgttggtgggttcgg 191
            | |||||||||||||| |||||
Sbjct: 144 gtgcttggtgttggtggtttcgg 122



to top

>emb|BX824707.1|CNS0A7VC Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTPGH66ZE03 of Hormone Treated Callus of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 2955

 Score = 61.9 bits (31), Expect = 9e-07
 Identities = 70/83 (84%)
 Strand = Plus / Plus

                                                                        
Query: 109  tgccgccatttctcctttgcagagatcaaggctgcaacgaagaactttgacgagtcacgg 168
            ||||| || ||||| ||||| |||||||| ||||| || || |||||||| ||||| |||
Sbjct: 1602 tgccgtcacttctcgtttgctgagatcaaagctgccactaaaaactttgatgagtcccgg 1661

                                   
Query: 169  atccttggtgttggtgggttcgg 191
             | |||||||||||||| |||||
Sbjct: 1662 gtgcttggtgttggtggtttcgg 1684



to top

>emb|AJ242671.1|ATH242671 Arabidopsis thaliana mRNA for putative serine threonine kinase
           (aak1 gene)
          Length = 1628

 Score = 61.9 bits (31), Expect = 9e-07
 Identities = 70/83 (84%)
 Strand = Plus / Plus

                                                                       
Query: 109 tgccgccatttctcctttgcagagatcaaggctgcaacgaagaactttgacgagtcacgg 168
           ||||| || ||||| ||||| |||||||| ||||| || || |||||||| ||||| |||
Sbjct: 280 tgccgtcacttctcgtttgctgagatcaaagctgccactaaaaactttgatgagtcccgg 339

                                  
Query: 169 atccttggtgttggtgggttcgg 191
            | |||||||||||||| |||||
Sbjct: 340 gtgcttggtgttggtggtttcgg 362



to top

>ref|XM_476281.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2610

 Score = 56.0 bits (28), Expect = 5e-05
 Identities = 67/80 (83%)
 Strand = Plus / Plus

                                                                        
Query: 109  tgccgccatttctcctttgcagagatcaaggctgcaacgaagaactttgacgagtcacgg 168
            ||||| || ||||| |||| |||||||||| | ||||||||||||||||| || |||| |
Sbjct: 1543 tgccggcacttctcatttggagagatcaagtcagcaacgaagaactttgatgaatcactg 1602

                                
Query: 169  atccttggtgttggtgggtt 188
             |  |||| |||||||||||
Sbjct: 1603 gtgattggagttggtgggtt 1622



to top

>gb|AC130609.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0048F12,
              complete sequence
          Length = 139627

 Score = 56.0 bits (28), Expect = 5e-05
 Identities = 67/80 (83%)
 Strand = Plus / Minus

                                                                          
Query: 109    tgccgccatttctcctttgcagagatcaaggctgcaacgaagaactttgacgagtcacgg 168
              ||||| || ||||| |||| |||||||||| | ||||||||||||||||| || |||| |
Sbjct: 134235 tgccggcacttctcatttggagagatcaagtcagcaacgaagaactttgatgaatcactg 134176

                                  
Query: 169    atccttggtgttggtgggtt 188
               |  |||| |||||||||||
Sbjct: 134175 gtgattggagttggtgggtt 134156



to top

>gb|AC135923.2| Oryza sativa (japonica cultivar-group) chromosome 5 PAC clone P0479C09,
             complete sequence
          Length = 156776

 Score = 56.0 bits (28), Expect = 5e-05
 Identities = 67/80 (83%)
 Strand = Plus / Minus

                                                                         
Query: 109   tgccgccatttctcctttgcagagatcaaggctgcaacgaagaactttgacgagtcacgg 168
             ||||| || ||||| |||| |||||||||| | ||||||||||||||||| || |||| |
Sbjct: 15440 tgccggcacttctcatttggagagatcaagtcagcaacgaagaactttgatgaatcactg 15381

                                 
Query: 169   atccttggtgttggtgggtt 188
              |  |||| |||||||||||
Sbjct: 15380 gtgattggagttggtgggtt 15361



to top

>gb|AY035053.1| Arabidopsis thaliana putative receptor-protein kinase (At3g51550)
            mRNA, complete cds
          Length = 3083

 Score = 56.0 bits (28), Expect = 5e-05
 Identities = 64/76 (84%)
 Strand = Plus / Plus

                                                                        
Query: 109  tgccgccatttctcctttgcagagatcaaggctgcaacgaagaactttgacgagtcacgg 168
            ||||| || ||||| ||||| |||||||| ||||| || || |||||||| ||||| |||
Sbjct: 1666 tgccgtcacttctcgtttgctgagatcaaagctgccactaaaaactttgatgagtcccgg 1725

                            
Query: 169  atccttggtgttggtg 184
             | |||||||||||||
Sbjct: 1726 gtgcttggtgttggtg 1741



to top

>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 56.0 bits (28), Expect = 5e-05
 Identities = 67/80 (83%)
 Strand = Plus / Minus

                                                                            
Query: 109      tgccgccatttctcctttgcagagatcaaggctgcaacgaagaactttgacgagtcacgg 168
                ||||| || ||||| |||| |||||||||| | ||||||||||||||||| || |||| |
Sbjct: 11689800 tgccggcacttctcatttggagagatcaagtcagcaacgaagaactttgatgaatcactg 11689741

                                    
Query: 169      atccttggtgttggtgggtt 188
                 |  |||| |||||||||||
Sbjct: 11689740 gtgattggagttggtgggtt 11689721



to top

>dbj|AK121335.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023119L07, full
            insert sequence
          Length = 3171

 Score = 56.0 bits (28), Expect = 5e-05
 Identities = 67/80 (83%)
 Strand = Plus / Plus

                                                                        
Query: 109  tgccgccatttctcctttgcagagatcaaggctgcaacgaagaactttgacgagtcacgg 168
            ||||| || ||||| |||| |||||||||| | ||||||||||||||||| || |||| |
Sbjct: 1705 tgccggcacttctcatttggagagatcaagtcagcaacgaagaactttgatgaatcactg 1764

                                
Query: 169  atccttggtgttggtgggtt 188
             |  |||| |||||||||||
Sbjct: 1765 gtgattggagttggtgggtt 1784



to top

>dbj|AK100616.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023108B08, full
            insert sequence
          Length = 2441

 Score = 56.0 bits (28), Expect = 5e-05
 Identities = 67/80 (83%)
 Strand = Plus / Plus

                                                                        
Query: 109  tgccgccatttctcctttgcagagatcaaggctgcaacgaagaactttgacgagtcacgg 168
            ||||| || ||||| |||| |||||||||| | ||||||||||||||||| || |||| |
Sbjct: 1180 tgccggcacttctcatttggagagatcaagtcagcaacgaagaactttgatgaatcactg 1239

                                
Query: 169  atccttggtgttggtgggtt 188
             |  |||| |||||||||||
Sbjct: 1240 gtgattggagttggtgggtt 1259



to top

>gb|AY107387.1| Zea mays PCO149313 mRNA sequence
          Length = 1336

 Score = 52.0 bits (26), Expect = 8e-04
 Identities = 77/94 (81%)
 Strand = Plus / Plus

                                                                       
Query: 151 aactttgacgagtcacggatccttggtgttggtgggttcggtaaagttcaccagggagag 210
           |||||||| ||||| |  || |||||||| ||||| || ||||||||| | |  || |||
Sbjct: 16  aactttgatgagtcccttattcttggtgtgggtggatttggtaaagtttatcgtggtgag 75

                                             
Query: 211 atcgatgggggctcaactaaggtggctatcaagc 244
            | ||||||||  |||||||||||||||||||||
Sbjct: 76  gttgatgggggaacaactaaggtggctatcaagc 109



to top

>dbj|AB088042.1| Vibrio parahaemolyticus genes for probable two-component response
            regulator, probable two-component system sensor kinase,
            probable ferrisiderophore receptor, probable TolR
            protein, probable ExbB2 protein, probable ExbD2 protein,
            probable TonB2 protein, hypothetical proteins, complete
            cds
          Length = 9995

 Score = 44.1 bits (22), Expect = 0.20
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 6    tggtggttggctgccgttgtcgctgt 31
            |||||||||||||||||||| |||||
Sbjct: 6832 tggtggttggctgccgttgtagctgt 6857



to top

>emb|AL359881.28| Human DNA sequence from clone RP11-338N10 on chromosome 1 Contains part
             of the CAMTA1 gene for calmodulin binding transcription
             activator 1 and two CpG islands, complete sequence
          Length = 65922

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 121   tcctttgcagagatcaaggctgca 144
             ||||||| ||||||||||||||||
Sbjct: 42090 tcctttgtagagatcaaggctgca 42113



to top

>emb|AL158040.14| Human DNA sequence from clone RP11-360G10 on chromosome 10 Contains
            the 5' end of the gene for KIAA0940 protein, a succinate
            dehydrogenase complex pseudogene, the 5' end of a novel
            gene (FLJ20445), a nucleolar protein family A member 2
            pseudogene 1 (NOLA2P1) and a CpG island, complete
            sequence
          Length = 213648

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 34   ggcaattcacacacttcaag 53
            ||||||||||||||||||||
Sbjct: 4226 ggcaattcacacacttcaag 4245



to top

>dbj|BA000032.2| Vibrio parahaemolyticus RIMD 2210633 DNA, chromosome 2, complete sequence
          Length = 1877212

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 6      tggtggttggctgccgttgt 25
              ||||||||||||||||||||
Sbjct: 149826 tggtggttggctgccgttgt 149845


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,787,721
Number of Sequences: 3902068
Number of extensions: 1787721
Number of successful extensions: 32335
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 32225
Number of HSP's gapped (non-prelim): 104
length of query: 244
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 222
effective length of database: 17,147,199,772
effective search space: 3806678349384
effective search space used: 3806678349384
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top