ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baet07h11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CB26_ARATH (Q9XF89) Chlorophyll a-b binding protein CP26, chloro... 74 7e-14
2PTW3C_BACSU (P39816) Putative PTS system glucosamine-specific EI... 29 3.6
3C8AP2_HUMAN (Q9UKL3) CASP8-associated protein 2 (FLICE-associate... 28 6.1

>CB26_ARATH (Q9XF89) Chlorophyll a-b binding protein CP26, chloroplast|
           precursor (Light-harvesting complex II protein 5)
           (LHCB5) (LHCIIc)
          Length = 280

 Score = 74.3 bits (181), Expect = 7e-14
 Identities = 42/90 (46%), Positives = 55/90 (61%)
 Frame = +2

Query: 5   AALAPTKMLGTRLDFAGSSRYATAAPTAGAQKIVSLFDRFNXXXXXXXXXXXVATSSAGI 184
           A+L  ++MLGT L+F   SR  ++AP A +         F+           V+ +S   
Sbjct: 2   ASLGVSEMLGTPLNFRAVSR--SSAPLASSPSTFKTVALFSKKKPAPAKSKAVSETS--- 56

Query: 185 DDELAKWYGPDRRIYLPNGLLDRSEVPEYL 274
            DELAKWYGPDRRI+LP+GLLDRSE+PEYL
Sbjct: 57  -DELAKWYGPDRRIFLPDGLLDRSEIPEYL 85



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>PTW3C_BACSU (P39816) Putative PTS system glucosamine-specific EIICBA component|
           [Includes: Glucosamine permease IIC component (PTS
           system glucosamine-specific EIIC component);
           Glucosamine-specific phosphotransferase enzyme IIB
           component (EC 2.7.1.69) (PTS
          Length = 631

 Score = 28.9 bits (63), Expect = 3.6
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -2

Query: 102 IFCAPAVGAAVAYLEEPAKSSRVPSILVGAS 10
           IFC PAV  A+ +   P K   +  +++ A+
Sbjct: 252 IFCLPAVALAIIHTARPEKKKMISGVMISAA 282



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>C8AP2_HUMAN (Q9UKL3) CASP8-associated protein 2 (FLICE-associated huge protein)|
          Length = 1982

 Score = 28.1 bits (61), Expect = 6.1
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -1

Query: 268 LRHLRPVKEAVGQVDPPVRAV 206
           L HLRP+ EA+  ++ PVR V
Sbjct: 847 LNHLRPIPEAISPLNSPVRPV 867


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,528,596
Number of Sequences: 219361
Number of extensions: 341182
Number of successful extensions: 1236
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1221
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1236
length of database: 80,573,946
effective HSP length: 66
effective length of database: 66,096,120
effective search space used: 1586306880
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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