>HXD3_MOUSE (P09027) Homeobox protein Hox-D3 (Hox-4.1) (MH-19)|
          Length = 417

 Score = 33.1 bits (74), Expect = 0.36
 Identities = 15/28 (53%), Positives = 17/28 (60%), Gaps = 5/28 (17%)
 Frame = +2

Query: 188 PSSSS-----GATVPLNHRHGPCSPAPT 256
           PSS+S      A +P NH HGPC P PT
Sbjct: 367 PSSASVDYSCAAQIPGNHHHGPCDPHPT 394

>ABDB_DROME (P09087) Homeobox protein abdominal-B (P3) (Infraabdominal 7)|
           (IAB-7) (PH189)
          Length = 493

 Score = 33.1 bits (74), Expect = 0.36
 Identities = 28/69 (40%), Positives = 37/69 (53%), Gaps = 6/69 (8%)
 Frame = +2

Query: 104 SAAGEQSYKILSTSSLKPQAVCSEP--KGIPS---SSSGATVPLN-HRHGPCSPAPTKKE 265
           SAA  QS +  STSS +P    S    +G PS   SSSGA+  L+    GPC+P P   E
Sbjct: 321 SAAARQSVEGTSTSSYEPPTYSSPGGLRGYPSENYSSSGASGGLSVGAVGPCTPNPGLHE 380

Query: 266 PTFEERLRR 292
            T +  +R+
Sbjct: 381 WTGQVSVRK 389

>HXD3_HUMAN (P31249) Homeobox protein Hox-D3 (Hox-4A)|
          Length = 416

 Score = 33.1 bits (74), Expect = 0.36
 Identities = 15/28 (53%), Positives = 17/28 (60%), Gaps = 5/28 (17%)
 Frame = +2

Query: 188 PSSSS-----GATVPLNHRHGPCSPAPT 256
           PSS+S      A +P NH HGPC P PT
Sbjct: 366 PSSASVDYSCAAQIPGNHHHGPCDPHPT 393

>BOSS_DROVI (Q24738) Protein bride of sevenless precursor|
          Length = 893

 Score = 32.3 bits (72), Expect = 0.62
 Identities = 19/51 (37%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
 Frame = +2

Query: 62  LLLLSCI-ICHALIASAAGEQSYKILSTSSLKPQAVCSEPKGIPSSSSGAT 211
           L+ +SCI +CHA+ A+   ++S  +  T   KPQ V S    IP+++ G+T
Sbjct: 20  LITISCIDLCHAVGAATPTKKSPPVRIT---KPQPVSSTTTAIPTTNEGST 67

>YJF1_YEAST (P47046) Hypothetical 91.3 kDa protein in TDH1-MTR4 intergenic|
           region
          Length = 822

 Score = 31.2 bits (69), Expect = 1.4
 Identities = 22/84 (26%), Positives = 39/84 (46%), Gaps = 3/84 (3%)
 Frame = +2

Query: 179 KGIPSSSSGATVPLNHRHGPCSPAPTKKEPT---FEERLRRDTLRAGYVQRKFSRNHRGG 349
           K I S  +  +  + H+ GP S +   K+P+   F +  + ++   G  + ++ RN    
Sbjct: 217 KTISSDENSNSSVIRHKLGPISTSKCPKKPSHSHFSKLKKYNSFFLGPKENRYKRN---- 272

Query: 350 GVLQSEAVKVPTELGSPQDTLEYV 421
                +A KVPTE  S   + +YV
Sbjct: 273 ---TQQATKVPTEKKSNHRSSQYV 293

>ECM21_YEAST (P38167) Extracellular matrix protein 21|
          Length = 1117

 Score = 30.8 bits (68), Expect = 1.8
 Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = +2

Query: 164 VCSEPKGIPSSSSGATVPLNHRHG-PCSPAPTKKEPTFEERLRRDTLR 304
           + S P    SS S +   LN   G P  P+PTKK  + ++R R  T+R
Sbjct: 4   ITSRPVAKNSSHSLSETDLNQSKGQPFQPSPTKKLGSMQQRRRSSTIR 51

>PNCB_XYLFT (Q87EC4) Nicotinate phosphoribosyltransferase (EC 2.4.2.11)|
           (NAPRTase)
          Length = 394

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 14/25 (56%), Positives = 18/25 (72%)
 Frame = -2

Query: 379 HLDRLRLQDPAAAVVPGELPLDVAG 305
           HLDR  LQ  A++ VPGE+ LD+ G
Sbjct: 89  HLDRKYLQLRASSQVPGEIELDIRG 113

>CHCH6_MOUSE (Q91VN4) Coiled-coil-helix-coiled-coil-helix domain-containing|
           protein 6
          Length = 273

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 32/94 (34%), Positives = 36/94 (38%), Gaps = 13/94 (13%)
 Frame = +2

Query: 134 LSTSSLKPQAVCSEPK---------GIPSSSSGATVPLNHRHGPCSPAPTKKEPTFEER- 283
           LS S +     CS+P          G  SS+   TVPL     P  PAPT   PT     
Sbjct: 30  LSESVVNRMKDCSQPSAGEQLVPGFGPSSSAPVPTVPLPAISVPTVPAPTTPVPTAPSSS 89

Query: 284 ---LRRDTLRAGYVQRKFSRNHRGGGVLQSEAVK 376
              L   T +      K      GGG LQS AVK
Sbjct: 90  VRGLPGGTCKGPLTDVKVPSAESGGG-LQSSAVK 122

>SDHD_BACAN (Q81S85) Probable D-serine dehydratase (EC 4.3.1.18) (D-serine|
           deaminase) (DSD)
          Length = 446

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 19/61 (31%), Positives = 29/61 (47%)
 Frame = +2

Query: 242 SPAPTKKEPTFEERLRRDTLRAGYVQRKFSRNHRGGGVLQSEAVKVPTELGSPQDTLEYV 421
           SP   +     EERL+R    A Y+ + F      GG+++S  VK+P+   S +   E  
Sbjct: 40  SPLSEENVKDAEERLKRF---ASYIAKVFPETKDTGGIIESPLVKIPSMKQSLEKNYEQP 96

Query: 422 I 424
           I
Sbjct: 97  I 97

>MDC1_MACMU (Q5TM68) Mediator of DNA damage checkpoint protein 1|
          Length = 2173

 Score = 30.0 bits (66), Expect = 3.1
 Identities = 24/84 (28%), Positives = 32/84 (38%), Gaps = 1/84 (1%)
 Frame = +2

Query: 155  PQAVCSEPKGIPSSSSGATVPLNHRHGPCS-PAPTKKEPTFEERLRRDTLRAGYVQRKFS 331
            PQA C + +    +    T P++H+  PCS P   K  P                    S
Sbjct: 1800 PQASCIKRQRATGNPGSLTAPIDHK--PCSAPLEPKSRP--------------------S 1837

Query: 332  RNHRGGGVLQSEAVKVPTELGSPQ 403
            RN R G V   E++    E  SPQ
Sbjct: 1838 RNQRWGAVRADESLTAIPEPASPQ 1861

>CITE1_MOUSE (P97769) Cbp/p300-interacting transactivator 1 (Melanocyte-specific|
           protein 1)
          Length = 203

 Score = 30.0 bits (66), Expect = 3.1
 Identities = 26/95 (27%), Positives = 45/95 (47%), Gaps = 3/95 (3%)
 Frame = +2

Query: 170 SEPKGIPSSSSGATVPLNHRHGPCSPAPTKKEPTFEERLRRDTLRAGYVQRKFSRNHRGG 349
           ++  G+P+SSSG+T P+    G  +  P+ K P+F        L A    +K +  ++G 
Sbjct: 55  AKANGVPTSSSGSTSPI----GSPTATPSSKPPSFNLH-PTPHLMASMQLQKLNSQYQGA 109

Query: 350 GVLQSEAVK---VPTELGSPQDTLEYVITVGVGSP 445
               + A+    +P E    Q+ +   + VG GSP
Sbjct: 110 AATAAAALTGAGLPGEEEPMQNWVTAPLVVG-GSP 143

>UBP32_HUMAN (Q8NFA0) Ubiquitin carboxyl-terminal hydrolase 32 (EC 3.1.2.15)|
            (Ubiquitin thioesterase 32)
            (Ubiquitin-specific-processing protease 32)
            (Deubiquitinating enzyme 32) (NY-REN-60 antigen)
          Length = 1604

 Score = 30.0 bits (66), Expect = 3.1
 Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
 Frame = +2

Query: 104  SAAGEQSYKILSTSSLKPQAVCSEPKGIPSSS--SGATVPLNHRHGPCSPAPT 256
            S+AGE+   +  + S     + S PKG PSSS  SG + P +    P S   T
Sbjct: 1349 SSAGEEDVLLSKSPSSLSANIISSPKGSPSSSRKSGTSCPSSKNSSPNSSPRT 1401

>HXA3_HETFR (Q9IA21) Homeobox protein Hox-A3|
          Length = 410

 Score = 29.6 bits (65), Expect = 4.0
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = +2

Query: 176 PKGIPSSSSGATVPLNHRHGPCSPAPT 256
           P G    +    +  NH HGPC P PT
Sbjct: 361 PSGNMDYNGAGPMTSNHHHGPCDPHPT 387

>PMPB_CHLTR (O84418) Probable outer membrane protein pmpB precursor|
           (Polymorphic membrane protein B)
          Length = 1754

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 26/92 (28%), Positives = 41/92 (44%), Gaps = 2/92 (2%)
 Frame = +2

Query: 101 ASAAGEQSYKILSTSSLKPQAVCSEPKGIPSSSSGATVPLNHRHGPCSPAPTKKEPTFEE 280
           A  A + +    +TS+ +   V S     PSSS+ +++ L       SPA + KE T + 
Sbjct: 638 ADTAEQPAAASAATSTPESAPVVSTALSTPSSSTVSSLTLLAASSQASPATSNKE-TQDP 696

Query: 281 RLRRDTLRAGYVQRKFSRN--HRGGGVLQSEA 370
               D L    V    S+N   +GGG+   +A
Sbjct: 697 NADTDLLIDYVVDTTISKNTAKKGGGIYAKKA 728

>HXD3_CHICK (O93353) Homeobox protein Hox-D3|
          Length = 413

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 15/35 (42%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
 Frame = +2

Query: 170 SEPKGIPSSSSGA-TVPLNHRHGPCSPAPTKKEPT 271
           S P       SGA  +  NH HGPC P PT  + T
Sbjct: 361 SHPPSANMDYSGAGPMGNNHHHGPCDPHPTYTDLT 395

>HXA3_CHICK (Q7T3J5) Homeobox protein Hox-A3|
          Length = 413

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 15/35 (42%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
 Frame = +2

Query: 170 SEPKGIPSSSSGA-TVPLNHRHGPCSPAPTKKEPT 271
           S P       SGA  +  NH HGPC P PT  + T
Sbjct: 361 SHPPSANMDYSGAGPMGNNHHHGPCDPHPTYTDLT 395

>UBP6_HUMAN (P35125) Ubiquitin carboxyl-terminal hydrolase 6 (EC 3.1.2.15)|
            (Ubiquitin thioesterase 6) (Ubiquitin-specific-processing
            protease 6) (Deubiquitinating enzyme 6) (Proto-oncogene
            TRE-2)
          Length = 1406

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
 Frame = +2

Query: 104  SAAGEQSYKILSTSSLKPQAVCSEPKGIPSSS--SGATVPLNHRHGPCSPAPT 256
            S+AG++   +  + S     + S PKG PSSS  SG + P +    P S   T
Sbjct: 1147 SSAGKEDMLLSKSPSSLSANISSSPKGSPSSSRKSGTSCPSSKNSSPNSSPRT 1199

>POLR_KYMVJ (P36304) RNA replicase polyprotein (EC 2.7.7.48)|
          Length = 1874

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = +2

Query: 140 TSSLKPQAVCSEPKGI-PSSSSGATVPLNHRHGPCSPAPTKKEPT 271
           T+ LKP++  S P    PSSS+G+  P         PAP K  PT
Sbjct: 661 TTELKPES--SNPNNPNPSSSAGSNPPPKSSSSDNPPAPNKPTPT 703

>ADA3_YEAST (P32494) Transcriptional adapter 3 (NGG1 protein)|
          Length = 702

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 29/93 (31%), Positives = 40/93 (43%), Gaps = 5/93 (5%)
 Frame = +2

Query: 158 QAVCSEPKGIPSSSSGATVPLNHRHGPCSPAPTKKEPTFEERLRRDTLRAG-YVQRKFSR 334
           QA  +E KG   S+ G T  L  + G  +       PTFEERL+R+    G Y+      
Sbjct: 476 QAKLAENKG---SNGGTTSTLPQQIGWITNGINLDYPTFEERLKRELKYVGIYMNLPKDE 532

Query: 335 NHRGGG----VLQSEAVKVPTELGSPQDTLEYV 421
           N+        V   E  ++  EL   Q TL+ V
Sbjct: 533 NNPNSDDPDWVTGREDDEISAELRELQGTLKQV 565


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,494,337
Number of Sequences: 219361
Number of extensions: 1172054
Number of successful extensions: 4579
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 4323
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4576
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3014947676
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)