ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet07g02 |
|---|---|
| Clone Library Name | barley_pub |
>RIN3_HUMAN (Q8TB24) Ras and Rab interactor 3 (Ras interaction/interference| protein 3) Length = 984 Score = 33.1 bits (74), Expect = 0.30 Identities = 17/36 (47%), Positives = 19/36 (52%) Frame = +1 Query: 244 PASQDALALLPCFPETPPVLPRYFSPYPATYVPRSP 351 P L L PC P PPVLP +P PA +P SP Sbjct: 281 PPPPPVLPLQPCSPAQPPVLPA-LAPAPACPLPTSP 315
>MRP3_RAT (O88563) Canalicular multispecific organic anion transporter 2| (Multidrug resistance-associated protein 3) (MRP-like protein 2) (MLP-2) Length = 1522 Score = 33.1 bits (74), Expect = 0.30 Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 1/43 (2%) Frame = -1 Query: 192 WRLKPCVAHSLDHRKRG-LLLCCLHLVPHMVHCLLWCNIWVHL 67 W PC L H + G ++L CL + + LLWC WV L Sbjct: 46 WAALPCYLFYLRHHRLGYIVLSCLSRLKTALGVLLWCISWVDL 88
>PXK_RAT (Q4FZZ1) PX domain-containing protein kinase-like protein| (Modulator of Na,K-ATPase) (MONaKA) Length = 580 Score = 32.3 bits (72), Expect = 0.51 Identities = 17/46 (36%), Positives = 23/46 (50%) Frame = +1 Query: 244 PASQDALALLPCFPETPPVLPRYFSPYPATYVPRSPLPVTVHTVHR 381 P++ + LP P PP P P P T +P PLP V+ V+R Sbjct: 506 PSTAGLSSALPPPPPPPPPPPPPAGPSPGTEMPAPPLPQAVNGVNR 551
>GDBX_WHEAT (P21292) Gamma-gliadin precursor| Length = 302 Score = 31.6 bits (70), Expect = 0.87 Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 2/54 (3%) Frame = +1 Query: 7 KPQRSYPKPYVSFYGSHLQNQMYPNVAPEQAVYHMWNQ--VQATQQKPPFPMVQ 162 +PQR+ P+P+ +F+ H Q +P P+Q H Q Q Q + PFP Q Sbjct: 47 QPQRTIPQPHQTFH--HQPQQTFPQ--PQQTYPHQPQQQFPQTQQPQQPFPQPQ 96
>VP2_AHSV6 (O71024) Outer capsid protein VP2| Length = 1051 Score = 31.2 bits (69), Expect = 1.1 Identities = 13/24 (54%), Positives = 18/24 (75%), Gaps = 2/24 (8%) Frame = +1 Query: 310 YFSP--YPATYVPRSPLPVTVHTV 375 YFSP YPAT++ R LP++V T+ Sbjct: 124 YFSPEYYPATFIKRESLPISVDTI 147
>GDA7_WHEAT (P04727) Alpha/beta-gliadin clone PW8142 precursor (Prolamin)| Length = 313 Score = 31.2 bits (69), Expect = 1.1 Identities = 15/38 (39%), Positives = 21/38 (55%) Frame = +1 Query: 244 PASQDALALLPCFPETPPVLPRYFSPYPATYVPRSPLP 357 P+ Q L L P FP+ P LP+ P P ++ P+ P P Sbjct: 67 PSQQPYLQLQP-FPQPQPFLPQLPYPQPQSFPPQQPYP 103
>GRP7_ARATH (Q03250) Glycine-rich RNA-binding protein 7| Length = 176 Score = 30.8 bits (68), Expect = 1.5 Identities = 20/52 (38%), Positives = 22/52 (42%) Frame = -2 Query: 341 GTYVAG*GEKYRGRTGGVSGKHGRRAKASWLAGTANCLLGGGGYMESIVGGG 186 G Y +G G Y G G G GRR +G GGGGY GGG Sbjct: 101 GGYRSGGGGGYSGGGGSYGGGGGRREGGGGYSG------GGGGYSSRGGGGG 146
>LEUD_VIBVY (Q7MP80) 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33)| (Isopropylmalate isomerase) (Alpha-IPM isomerase) (IPMI) Length = 200 Score = 30.4 bits (67), Expect = 1.9 Identities = 14/31 (45%), Positives = 19/31 (61%) Frame = +1 Query: 43 FYGSHLQNQMYPNVAPEQAVYHMWNQVQATQ 135 FYG+ + NQM P EQ V ++ VQAT+ Sbjct: 109 FYGNSINNQMVPVRLTEQEVDELFQYVQATE 139
>DNAA_DEIRA (Q9RYE7) Chromosomal replication initiator protein dnaA| Length = 466 Score = 30.4 bits (67), Expect = 1.9 Identities = 17/41 (41%), Positives = 21/41 (51%) Frame = +1 Query: 241 VPASQDALALLPCFPETPPVLPRYFSPYPATYVPRSPLPVT 363 +PA+QDAL L P PP P +P P T +P P T Sbjct: 79 LPAAQDALLL----PNDPPPAPEAAAPTPKTKAAPTPPPST 115
>MATK_AERJP (Q3LFX6) Maturase K (Intron maturase)| Length = 517 Score = 30.0 bits (66), Expect = 2.5 Identities = 10/23 (43%), Positives = 17/23 (73%) Frame = +1 Query: 352 LPVTVHTVHRERQGYTEIVELHD 420 +P +H +HRER GY +I+ ++D Sbjct: 490 IPFLLHRLHRERIGYLDIIRMND 512
>PRP4_ARATH (O22212) U4/U6 small nuclear ribonucleoprotein PRP4-like protein| Length = 554 Score = 30.0 bits (66), Expect = 2.5 Identities = 18/44 (40%), Positives = 23/44 (52%) Frame = +1 Query: 238 AVPASQDALALLPCFPETPPVLPRYFSPYPATYVPRSPLPVTVH 369 A P QDA +L P F PPV+P F P P +P+P+ H Sbjct: 19 APPVLQDASSL-PGFSAIPPVVPPSFPP------PMAPIPMMPH 55
>TMPS2_MOUSE (Q9JIQ8) Transmembrane protease, serine 2 (EC 3.4.21.-)| (Epitheliasin) (Plasmic transmembrane protein X) [Contains: Transmembrane protease, serine 2 non-catalytic chain; Transmembrane protease, serine 2 catalytic chain] Length = 490 Score = 30.0 bits (66), Expect = 2.5 Identities = 15/45 (33%), Positives = 20/45 (44%) Frame = +1 Query: 283 PETPPVLPRYFSPYPATYVPRSPLPVTVHTVHRERQGYTEIVELH 417 P PPV P ++ YPA Y P PV + Q T ++ H Sbjct: 27 PPRPPVAPNGYNLYPAQYYPS---PVPQYAPRITTQASTSVIHTH 68
>US08_HCMVA (P09730) Unique short US8 glycoprotein precursor (gpUS8) (HXLF4)| Length = 227 Score = 30.0 bits (66), Expect = 2.5 Identities = 20/68 (29%), Positives = 27/68 (39%), Gaps = 7/68 (10%) Frame = -1 Query: 249 GWHGELPSRWRRVHG-------EHSWWRLKPCVAHSLDHRKRGLLLCCLHLVPHMVHCLL 91 GW G +W R+H + +RL+ V LDH LHLVP + Sbjct: 97 GWSGRRGRKWGRLHAPECLVETTEAVFRLRQWVPTDLDH-------LTLHLVPCTKCKPM 149 Query: 90 WCNIWVHL 67 WC H+ Sbjct: 150 WCQPRYHI 157
>IF2B_CAEEL (Q21230) Putative eukaryotic translation initiation factor 2 beta| subunit (eIF-2-beta) Length = 250 Score = 30.0 bits (66), Expect = 2.5 Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 4/32 (12%) Frame = +2 Query: 41 HFMAHTCKIRCTQMLHQSK----QCTICGTKC 124 + M HTCK TQ+ ++ QCT CG++C Sbjct: 190 YVMCHTCKSPETQLTKDTRLFFLQCTNCGSRC 221
>TSN31_BRARE (Q7ZUB3) Tetraspanin-31 (Tspan-31) (Sarcoma amplified sequence| homolog) Length = 212 Score = 29.6 bits (65), Expect = 3.3 Identities = 14/32 (43%), Positives = 15/32 (46%) Frame = +2 Query: 53 HTCKIRCTQMLHQSKQCTICGTKCKQHSRSPL 148 H C CTQ K+C CG K QHS L Sbjct: 147 HLCTSPCTQ----KKECVTCGLKMLQHSSEAL 174
>GDA5_WHEAT (P04725) Alpha/beta-gliadin A-V precursor (Prolamin)| Length = 319 Score = 29.3 bits (64), Expect = 4.3 Identities = 13/32 (40%), Positives = 18/32 (56%) Frame = +1 Query: 1 YPKPQRSYPKPYVSFYGSHLQNQMYPNVAPEQ 96 + +PQ+ YP VSF S L Q +V P+Q Sbjct: 248 FQQPQQQYPSSQVSFQPSQLNPQAQGSVQPQQ 279 Score = 28.5 bits (62), Expect = 7.4 Identities = 14/38 (36%), Positives = 20/38 (52%) Frame = +1 Query: 244 PASQDALALLPCFPETPPVLPRYFSPYPATYVPRSPLP 357 P+ Q L L P FP+ P P+ P P ++ P+ P P Sbjct: 70 PSQQPYLQLQP-FPQPQPFPPQLPYPQPQSFPPQQPYP 106
>ZF276_MOUSE (Q8CE64) Zinc finger protein 276 (Zfp-276)| Length = 538 Score = 28.9 bits (63), Expect = 5.7 Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 7/45 (15%) Frame = +2 Query: 23 ILNHMCHFMAHTCKIRCTQMLHQSK-------QCTICGTKCKQHS 136 + N++C T K R ++HQ + QC +CG +C+Q + Sbjct: 417 VRNYICDECGQTFKQRKHLLVHQMRHSGAKPLQCEVCGFQCRQRA 461
>ZF276_HUMAN (Q8N554) Zinc finger protein 276 homolog (Zfp-276)| Length = 539 Score = 28.9 bits (63), Expect = 5.7 Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 7/45 (15%) Frame = +2 Query: 23 ILNHMCHFMAHTCKIRCTQMLHQSK-------QCTICGTKCKQHS 136 + N++C T K R ++HQ + QC +CG +C+Q + Sbjct: 418 VRNYICDECGQTFKQRKHLLVHQMRHSGAKPLQCEVCGFQCRQRA 462
>PG20_MYCTU (O53416) Hypothetical PE-PGRS family protein PE_PGRS20| Length = 463 Score = 28.9 bits (63), Expect = 5.7 Identities = 24/71 (33%), Positives = 28/71 (39%), Gaps = 1/71 (1%) Frame = -2 Query: 350 GLLGTYVAG*GEKYRGRTGGVSGKHGRRAKASWLAGT-ANCLLGGGGYMESIVGGG*NLV 174 GL G AG G GG G+ G A WL+G + GGGG G G + Sbjct: 220 GLFGNGGAGGA----GGAGGAGGRGGDGGSAGWLSGNGGDAGTGGGGGNAGNGGNGGS-- 273 Query: 173 LPIVWTIGKGG 141 W G GG Sbjct: 274 --AGWLSGNGG 282 Score = 28.5 bits (62), Expect = 7.4 Identities = 17/47 (36%), Positives = 20/47 (42%) Frame = -2 Query: 320 GEKYRGRTGGVSGKHGRRAKASWLAGTANCLLGGGGYMESIVGGG*N 180 G+ G GG +G G A WL+G GGGG G G N Sbjct: 254 GDAGTGGGGGNAGNGGNGGSAGWLSGNGG--TGGGGGTAGAGGQGGN 298 Score = 28.1 bits (61), Expect = 9.7 Identities = 23/57 (40%), Positives = 23/57 (40%) Frame = -2 Query: 356 GNGLLGTYVAG*GEKYRGRTGGVSGKHGRRAKASWLAGTANCLLGGGGYMESIVGGG 186 GNG LG AG G K G GG GK G N GG G M I G G Sbjct: 392 GNGGLG---AGSGAKGNGGNGGDGGKGGDAQLIGNGGNGGNGGKGGTGLMPGINGTG 445
>CDC12_SCHPO (Q10059) Cell division control protein 12| Length = 1841 Score = 28.9 bits (63), Expect = 5.7 Identities = 15/44 (34%), Positives = 19/44 (43%) Frame = +1 Query: 283 PETPPVLPRYFSPYPATYVPRSPLPVTVHTVHRERQGYTEIVEL 414 P TPPV R F P P VP P+ T + E+ E+ Sbjct: 149 PVTPPVHSRSFDPLPKPPVPSVPVSKTKRRTKHKLAPVVEVPEI 192
>EMAL_DROME (Q9VUI3) Echinoderm microtubule-associated protein-like CG13466| Length = 819 Score = 28.5 bits (62), Expect = 7.4 Identities = 15/39 (38%), Positives = 24/39 (61%) Frame = -2 Query: 167 IVWTIGKGGFCCVACTWFHIWYTACSGATFGYI*FCKCE 51 ++WTI + G+ CVA FH + T +G+T G++ CE Sbjct: 578 LIWTI-QTGYECVALA-FHPFGTLAAGSTEGHLLVINCE 614
>GRP1_PHAVU (P10495) Glycine-rich cell wall structural protein 1.0 precursor| (GRP 1.0) Length = 252 Score = 28.5 bits (62), Expect = 7.4 Identities = 28/81 (34%), Positives = 35/81 (43%), Gaps = 6/81 (7%) Frame = -2 Query: 413 SSTISVYPCLSLC----TVCTVTG--NGLLGTYVAG*GEKYRGRTGGVSGKHGRRAKASW 252 S+ + V+ C +C T+ T+ N +GT V G G GG SG G Sbjct: 9 SNVLFVFVCFGICSAARTLLTLEDRVNLHVGTVVGGYGG------GGGSGGGG------- 55 Query: 251 LAGTANCLLGGGGYMESIVGG 189 G A LGGGGY E GG Sbjct: 56 --GGAAVELGGGGYGEGAGGG 74
>TRFE_ANAPL (P56410) Ovotransferrin| Length = 686 Score = 28.5 bits (62), Expect = 7.4 Identities = 15/35 (42%), Positives = 18/35 (51%) Frame = -2 Query: 392 PCLSLCTVCTVTGNGLLGTYVAG*GEKYRGRTGGV 288 P LC +C +G LL VA EKY G TG + Sbjct: 494 PNSRLCKLCQGSGENLLEKCVASSHEKYYGYTGAL 528
>GDA3_WHEAT (P04723) Alpha/beta-gliadin A-III precursor (Prolamin)| Length = 282 Score = 28.5 bits (62), Expect = 7.4 Identities = 13/32 (40%), Positives = 16/32 (50%) Frame = +1 Query: 1 YPKPQRSYPKPYVSFYGSHLQNQMYPNVAPEQ 96 Y +PQ YP VSF S Q +V P+Q Sbjct: 211 YQQPQEQYPSGQVSFQSSQQNPQAQGSVQPQQ 242
>YNIA_ENTAE (P46381) Hypothetical protein in tonB 3'region (Fragment)| Length = 118 Score = 28.1 bits (61), Expect = 9.7 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 3/34 (8%) Frame = +1 Query: 262 LALLPCFPETPPVL---PRYFSPYPATYVPRSPL 354 LA+LP PE PP + + SP PA ++ R P+ Sbjct: 55 LAMLPLHPEQPPQIYDGYQSVSPLPAGFLERQPI 88
>LEUD_VIBVU (Q8DED8) 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33)| (Isopropylmalate isomerase) (Alpha-IPM isomerase) (IPMI) Length = 200 Score = 28.1 bits (61), Expect = 9.7 Identities = 13/31 (41%), Positives = 18/31 (58%) Frame = +1 Query: 43 FYGSHLQNQMYPNVAPEQAVYHMWNQVQATQ 135 FY + + NQM P EQ V ++ VQAT+ Sbjct: 109 FYSNSINNQMVPVRLTEQEVDELFQYVQATE 139
>TRABD_HUMAN (Q9UGI0) TRABID protein (Zinc finger Ran-binding domain-containing| protein 1) Length = 708 Score = 28.1 bits (61), Expect = 9.7 Identities = 20/69 (28%), Positives = 28/69 (40%), Gaps = 8/69 (11%) Frame = +2 Query: 32 HMCHFMAHTCKIRCTQMLHQ--------SKQCTICGTKCKQHSRSPLFRWSKLWATQGFN 187 HMC ++ IRCTQ L Q S Q + G++ S P ++ Sbjct: 91 HMCTYLNWPRAIRCTQCLSQRRTRSPTESPQSSGSGSRPVAFSVDPCEEYNDRNKLNTRT 150 Query: 188 RHQLCSPCT 214 +H CS CT Sbjct: 151 QHWTCSVCT 159
>K1C10_BOVIN (P06394) Keratin, type I cytoskeletal 10 (Cytokeratin-10) (CK-10)| (Keratin-10) (K10) (Cytokeratin-6B) (Cytokeratin VIB) Length = 526 Score = 28.1 bits (61), Expect = 9.7 Identities = 18/57 (31%), Positives = 24/57 (42%) Frame = -2 Query: 356 GNGLLGTYVAG*GEKYRGRTGGVSGKHGRRAKASWLAGTANCLLGGGGYMESIVGGG 186 G G G G G Y G +GG G +G + + G ++ G GG GGG Sbjct: 436 GEGSSGGGSYGGGRGYGGSSGGGGGGYGGGSSSGGYGGGSSSGGGHGGSSGGSYGGG 492
>ZDH19_HUMAN (Q8WVZ1) Probable palmitoyltransferase ZDHHC19 (EC 2.3.1.-) (Zinc| finger DHHC domain-containing protein 19) (DHHC-19) Length = 282 Score = 28.1 bits (61), Expect = 9.7 Identities = 11/20 (55%), Positives = 11/20 (55%) Frame = -1 Query: 132 CCLHLVPHMVHCLLWCNIWV 73 CC H P HC WCNI V Sbjct: 117 CCFHRPPRTYHC-PWCNICV 135 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 69,658,405 Number of Sequences: 219361 Number of extensions: 1545038 Number of successful extensions: 5176 Number of sequences better than 10.0: 29 Number of HSP's better than 10.0 without gapping: 4764 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5161 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2511994855 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
