ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name baet07g02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC084218.6| Oryza sativa (japonica cultivar-group) chromosome... 230 3e-57
2gb|AC016779.5| Genomic sequence for Oryza sativa clone 10N6, com... 230 3e-57
3dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 230 3e-57
4dbj|AK110983.1| Oryza sativa (japonica cultivar-group) cDNA clon... 230 3e-57
5emb|AL359541.11| Human DNA sequence from clone RP11-474I16 on ch... 44 0.37
6gb|AC154642.2| Mus musculus BAC clone RP23-277C14 from chromosom... 44 0.37
7gb|AC154362.1| Mus musculus BAC clone RP23-154E1 from 14, comple... 44 0.37
8gb|AC147120.2| Pan troglodytes BAC clone CH251-531L7 from Y, com... 42 1.5
9gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence 42 1.5
10gb|AC163729.5| Pan troglodytes BAC clone CH251-1018P19 from chro... 42 1.5
11gb|AC155239.2| Mus musculus BAC clone RP24-462F23 from chromosom... 42 1.5
12gb|AC163661.4| Mus musculus BAC clone RP23-288B18 from chromosom... 40 5.8
13gb|AC137942.6| Mus musculus chromosome 10, clone RP24-502K6, com... 40 5.8
14gb|AC140218.2| Mus musculus BAC clone RP23-474A22 from chromosom... 40 5.8
15gb|BC065239.1| Homo sapiens cDNA clone IMAGE:6165872, partial cds 40 5.8
16gb|AC121926.3| Mus musculus BAC clone RP24-202B3 from chromosome... 40 5.8
17gb|AC109214.6| Mus musculus chromosome 10, clone RP23-352E22, co... 40 5.8
18emb|AL354732.30| Human DNA sequence from clone RP11-576I22 on ch... 40 5.8
19gb|DP000031.1| Dasypus novemcinctus target 116 genomic scaffold 40 5.8
20ref|XM_575459.1| PREDICTED: Rattus norvegicus similar to zinc fi... 40 5.8
21gb|AC152922.5| Mus musculus BAC clone RP24-386D3 from 10, comple... 40 5.8
22emb|AL929266.9| Zebrafish DNA sequence from clone CH211-67E16 in... 40 5.8
23dbj|AP001541.4| Homo sapiens genomic DNA, chromosome 11q, clone:... 40 5.8
24dbj|AK113961.1| Ciona intestinalis cDNA, clone:cicl019b17, full ... 40 5.8
25emb|AL844172.8| Zebrafish DNA sequence from clone DKEY-223H12, c... 40 5.8 
>gb|AC084218.6| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0001A07,
             complete sequence
          Length = 164898

 Score =  230 bits (116), Expect = 3e-57
 Identities = 253/298 (84%), Gaps = 3/298 (1%)
 Strand = Plus / Minus

                                                                         
Query: 73    tacccaaatgttgcaccagagcaagcagtgtaccatatgtggaaccaagtgcaagcaaca 132
             ||||||| |||| |||||||||||||| |||||||||||||| | || ||||||||||||
Sbjct: 20421 tacccaagtgttccaccagagcaagcaatgtaccatatgtggcatcaggtgcaagcaaca 20362

                                                                         
Query: 133   cagcagaagcccccttttccgatggtccaaactatgggcaacacaaggtttcaaccgcca 192
             ||||||||||| | |||||| ||||| |  ||||||||||  ||| | |||| |||||| 
Sbjct: 20361 cagcagaagccgcattttccaatggtacccactatgggcagtacaggctttccaccgcct 20302

                                                                         
Query: 193   ccaactatgctctccatgtaccctcctccacctagaaggcagttcgccgtgccagccagc 252
             |||||| |||||  ||||||||||||   ||||||| |||| ||| || ||||| |||||
Sbjct: 20301 ccaactgtgctccacatgtaccctcc---acctagagggcaattcaccatgccatccagc 20245

                                                                         
Query: 253   caagatgctttagctcttcttccatgttttcctgaaactcctcctgtccttcctcggtac 312
             ||||||| ||||| |||| ||||||||| ||||||| || | || |||||||| ||||||
Sbjct: 20244 caagatggtttaggtcttattccatgttatcctgaagcttcccccgtccttccacggtac 20185

                                                                       
Query: 313   ttctcgccttaccctgccacatatgtaccaagaagtccattgccagttactgtgcaca 370
             ||||||||||| |||||| | | |||||||||| ||||||||||||||| ||| ||||
Sbjct: 20184 ttctcgccttatcctgcctcctttgtaccaagacgtccattgccagttaatgttcaca 20127
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>gb|AC016779.5| Genomic sequence for Oryza sativa clone 10N6, complete sequence
          Length = 140234

 Score =  230 bits (116), Expect = 3e-57
 Identities = 253/298 (84%), Gaps = 3/298 (1%)
 Strand = Plus / Plus

                                                                         
Query: 73    tacccaaatgttgcaccagagcaagcagtgtaccatatgtggaaccaagtgcaagcaaca 132
             ||||||| |||| |||||||||||||| |||||||||||||| | || ||||||||||||
Sbjct: 41744 tacccaagtgttccaccagagcaagcaatgtaccatatgtggcatcaggtgcaagcaaca 41803

                                                                         
Query: 133   cagcagaagcccccttttccgatggtccaaactatgggcaacacaaggtttcaaccgcca 192
             ||||||||||| | |||||| ||||| |  ||||||||||  ||| | |||| |||||| 
Sbjct: 41804 cagcagaagccgcattttccaatggtacccactatgggcagtacaggctttccaccgcct 41863

                                                                         
Query: 193   ccaactatgctctccatgtaccctcctccacctagaaggcagttcgccgtgccagccagc 252
             |||||| |||||  ||||||||||||   ||||||| |||| ||| || ||||| |||||
Sbjct: 41864 ccaactgtgctccacatgtaccctcc---acctagagggcaattcaccatgccatccagc 41920

                                                                         
Query: 253   caagatgctttagctcttcttccatgttttcctgaaactcctcctgtccttcctcggtac 312
             ||||||| ||||| |||| ||||||||| ||||||| || | || |||||||| ||||||
Sbjct: 41921 caagatggtttaggtcttattccatgttatcctgaagcttcccccgtccttccacggtac 41980

                                                                       
Query: 313   ttctcgccttaccctgccacatatgtaccaagaagtccattgccagttactgtgcaca 370
             ||||||||||| |||||| | | |||||||||| ||||||||||||||| ||| ||||
Sbjct: 41981 ttctcgccttatcctgcctcctttgtaccaagacgtccattgccagttaatgttcaca 42038
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score =  230 bits (116), Expect = 3e-57
 Identities = 253/298 (84%), Gaps = 3/298 (1%)
 Strand = Plus / Minus

                                                                           
Query: 73      tacccaaatgttgcaccagagcaagcagtgtaccatatgtggaaccaagtgcaagcaaca 132
               ||||||| |||| |||||||||||||| |||||||||||||| | || ||||||||||||
Sbjct: 2825810 tacccaagtgttccaccagagcaagcaatgtaccatatgtggcatcaggtgcaagcaaca 2825751

                                                                           
Query: 133     cagcagaagcccccttttccgatggtccaaactatgggcaacacaaggtttcaaccgcca 192
               ||||||||||| | |||||| ||||| |  ||||||||||  ||| | |||| |||||| 
Sbjct: 2825750 cagcagaagccgcattttccaatggtacccactatgggcagtacaggctttccaccgcct 2825691

                                                                           
Query: 193     ccaactatgctctccatgtaccctcctccacctagaaggcagttcgccgtgccagccagc 252
               |||||| |||||  ||||||||||||   ||||||| |||| ||| || ||||| |||||
Sbjct: 2825690 ccaactgtgctccacatgtaccctcc---acctagagggcaattcaccatgccatccagc 2825634

                                                                           
Query: 253     caagatgctttagctcttcttccatgttttcctgaaactcctcctgtccttcctcggtac 312
               ||||||| ||||| |||| ||||||||| ||||||| || | || |||||||| ||||||
Sbjct: 2825633 caagatggtttaggtcttattccatgttatcctgaagcttcccccgtccttccacggtac 2825574

                                                                         
Query: 313     ttctcgccttaccctgccacatatgtaccaagaagtccattgccagttactgtgcaca 370
               ||||||||||| |||||| | | |||||||||| ||||||||||||||| ||| ||||
Sbjct: 2825573 ttctcgccttatcctgcctcctttgtaccaagacgtccattgccagttaatgttcaca 2825516
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>dbj|AK110983.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-174-C11, full
            insert sequence
          Length = 2392

 Score =  230 bits (116), Expect = 3e-57
 Identities = 253/298 (84%), Gaps = 3/298 (1%)
 Strand = Plus / Plus

                                                                        
Query: 73   tacccaaatgttgcaccagagcaagcagtgtaccatatgtggaaccaagtgcaagcaaca 132
            ||||||| |||| |||||||||||||| |||||||||||||| | || ||||||||||||
Sbjct: 1066 tacccaagtgttccaccagagcaagcaatgtaccatatgtggcatcaggtgcaagcaaca 1125

                                                                        
Query: 133  cagcagaagcccccttttccgatggtccaaactatgggcaacacaaggtttcaaccgcca 192
            ||||||||||| | |||||| ||||| |  ||||||||||  ||| | |||| |||||| 
Sbjct: 1126 cagcagaagccgcattttccaatggtacccactatgggcagtacaggctttccaccgcct 1185

                                                                        
Query: 193  ccaactatgctctccatgtaccctcctccacctagaaggcagttcgccgtgccagccagc 252
            |||||| |||||  ||||||||||||   ||||||| |||| ||| || ||||| |||||
Sbjct: 1186 ccaactgtgctccacatgtaccctcc---acctagagggcaattcaccatgccatccagc 1242

                                                                        
Query: 253  caagatgctttagctcttcttccatgttttcctgaaactcctcctgtccttcctcggtac 312
            ||||||| ||||| |||| ||||||||| ||||||| || | || |||||||| ||||||
Sbjct: 1243 caagatggtttaggtcttattccatgttatcctgaagcttcccccgtccttccacggtac 1302

                                                                      
Query: 313  ttctcgccttaccctgccacatatgtaccaagaagtccattgccagttactgtgcaca 370
            ||||||||||| |||||| | | |||||||||| ||||||||||||||| ||| ||||
Sbjct: 1303 ttctcgccttatcctgcctcctttgtaccaagacgtccattgccagttaatgttcaca 1360
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>emb|AL359541.11| Human DNA sequence from clone RP11-474I16 on chromosome 1 Contains
             three novel genes, the FCGR2B gene for Fc fragment of IgG
             low affinity IIb receptor for (CD32), a ribosomal protein
             L31 (RPL31) pseudogene, the gene for Fc receptor homolog
             expressed in B cells (FREB), the gene for a novel protein
             (FLJ31052), the DUSP12 gene for dual specificity
             phosphatase 12, the 5' end of the ATF6 gene for activating
             transcription factor 6 and a CpG island, complete sequence
          Length = 158641

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 333   atatgtaccaagaagtccattg 354
             ||||||||||||||||||||||
Sbjct: 72583 atatgtaccaagaagtccattg 72562
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>gb|AC154642.2| Mus musculus BAC clone RP23-277C14 from chromosome 14, complete sequence
          Length = 211315

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 359    ttactgtgcacacagtgcacag 380
              ||||||||||||||||||||||
Sbjct: 189258 ttactgtgcacacagtgcacag 189279
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>gb|AC154362.1| Mus musculus BAC clone RP23-154E1 from 14, complete sequence
          Length = 205650

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 359    ttactgtgcacacagtgcacag 380
              ||||||||||||||||||||||
Sbjct: 175162 ttactgtgcacacagtgcacag 175141
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>gb|AC147120.2| Pan troglodytes BAC clone CH251-531L7 from Y, complete sequence
          Length = 175034

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 26    ctaaaccatatgtgtcatttt 46
             |||||||||||||||||||||
Sbjct: 93124 ctaaaccatatgtgtcatttt 93144
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>gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence
          Length = 23952694

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 26       ctaaaccatatgtgtcatttt 46
                |||||||||||||||||||||
Sbjct: 12612201 ctaaaccatatgtgtcatttt 12612221



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 26      ctaaaccatatgtgtcatttt 46
               |||||||||||||||||||||
Sbjct: 1631179 ctaaaccatatgtgtcatttt 1631159
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>gb|AC163729.5| Pan troglodytes BAC clone CH251-1018P19 from chromosome y, complete
             sequence
          Length = 196073

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 26    ctaaaccatatgtgtcatttt 46
             |||||||||||||||||||||
Sbjct: 69556 ctaaaccatatgtgtcatttt 69576
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>gb|AC155239.2| Mus musculus BAC clone RP24-462F23 from chromosome 14, complete
             sequence
          Length = 170006

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 340   ccaagaagtccattgccagtt 360
             |||||||||||||||||||||
Sbjct: 22759 ccaagaagtccattgccagtt 22739
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>gb|AC163661.4| Mus musculus BAC clone RP23-288B18 from chromosome 10, complete sequence
          Length = 210846

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 4      cctaaacctcagagatctta 23
              ||||||||||||||||||||
Sbjct: 182378 cctaaacctcagagatctta 182397
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>gb|AC137942.6| Mus musculus chromosome 10, clone RP24-502K6, complete sequence
          Length = 173848

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 273    tccatgttttcctgaaactc 292
              ||||||||||||||||||||
Sbjct: 141229 tccatgttttcctgaaactc 141210
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>gb|AC140218.2| Mus musculus BAC clone RP23-474A22 from chromosome 5, complete sequence
          Length = 184636

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 261    tttagctcttcttccatgtt 280
              ||||||||||||||||||||
Sbjct: 131309 tttagctcttcttccatgtt 131290
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>gb|BC065239.1| Homo sapiens cDNA clone IMAGE:6165872, partial cds
          Length = 1378

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 281 ttcctgaaactcctcctgtc 300
           ||||||||||||||||||||
Sbjct: 237 ttcctgaaactcctcctgtc 256
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>gb|AC121926.3| Mus musculus BAC clone RP24-202B3 from chromosome 10, complete sequence
          Length = 185398

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 4      cctaaacctcagagatctta 23
              ||||||||||||||||||||
Sbjct: 108124 cctaaacctcagagatctta 108143
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>gb|AC109214.6| Mus musculus chromosome 10, clone RP23-352E22, complete sequence
          Length = 175569

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 273    tccatgttttcctgaaactc 292
              ||||||||||||||||||||
Sbjct: 114530 tccatgttttcctgaaactc 114549
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>emb|AL354732.30| Human DNA sequence from clone RP11-576I22 on chromosome 1 Contains a
              chromosome 14 open reading frame 94 (C14orf94) pseudogene
              and the 3' end of a novel gene, complete sequence
          Length = 139243

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 281    ttcctgaaactcctcctgtc 300
              ||||||||||||||||||||
Sbjct: 127737 ttcctgaaactcctcctgtc 127718
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>gb|DP000031.1| Dasypus novemcinctus target 116 genomic scaffold
          Length = 288075

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 77     caaatgttgcaccagagcaagcagtgta 104
              ||||||||||| ||||||||| ||||||
Sbjct: 240908 caaatgttgcaacagagcaagaagtgta 240935
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>ref|XM_575459.1| PREDICTED: Rattus norvegicus similar to zinc finger protein 398
           (LOC500108), mRNA
          Length = 2764

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 215 ctcctccacctagaaggcag 234
           ||||||||||||||||||||
Sbjct: 204 ctcctccacctagaaggcag 223
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>gb|AC152922.5| Mus musculus BAC clone RP24-386D3 from 10, complete sequence
          Length = 191855

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 4     cctaaacctcagagatctta 23
             ||||||||||||||||||||
Sbjct: 40760 cctaaacctcagagatctta 40779
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>emb|AL929266.9| Zebrafish DNA sequence from clone CH211-67E16 in linkage group 9,
              complete sequence
          Length = 199104

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 20     cttatcctaaaccatatgtgtcat 43
              ||||||||||||||||| ||||||
Sbjct: 122046 cttatcctaaaccatatctgtcat 122069
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>dbj|AP001541.4| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-683O4, complete
              sequence
          Length = 212884

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 208    atgtaccctcctccacctagaaggcagt 235
              |||| |||||||||||||||| ||||||
Sbjct: 104370 atgtcccctcctccacctagatggcagt 104343
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>dbj|AK113961.1| Ciona intestinalis cDNA, clone:cicl019b17, full insert sequence
          Length = 1522

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 123 gcaagcaacacagcagaagc 142
           ||||||||||||||||||||
Sbjct: 927 gcaagcaacacagcagaagc 908
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>emb|AL844172.8| Zebrafish DNA sequence from clone DKEY-223H12, complete sequence
          Length = 163195

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 132   acagcagaagcccccttttc 151
             ||||||||||||||||||||
Sbjct: 43538 acagcagaagcccccttttc 43557


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,859,173
Number of Sequences: 3902068
Number of extensions: 3859173
Number of successful extensions: 77521
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 77432
Number of HSP's gapped (non-prelim): 85
length of query: 435
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 413
effective length of database: 17,147,199,772
effective search space: 7081793505836
effective search space used: 7081793505836
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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