>RRP3_HORVU (O48609) Plastid-specific 30S ribosomal protein 3, chloroplast|
           precursor (PSRP-3)
          Length = 181

 Score =  164 bits (416), Expect = 8e-41
 Identities = 86/146 (58%), Positives = 86/146 (58%)
 Frame = +2

Query: 35  MLPMSVHPATTPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTXXXXXXXVE 214
           MLPMSVHPATTPA                                     T       VE
Sbjct: 1   MLPMSVHPATTPALASRPRVSLPRPSTPSSSSSLVHLKSRRPPLRSLRSLTAAAAAAAVE 60

Query: 215 AGEPYFXXXXXXXXXXXXXXXXVVESEEYKVEVPEKQDPMLVLKFIWMEKNIGIALDQMV 394
           AGEPYF                VVESEEYKVEVPEKQDPMLVLKFIWMEKNIGIALDQMV
Sbjct: 61  AGEPYFGLGDDEPLGGEGDAEAVVESEEYKVEVPEKQDPMLVLKFIWMEKNIGIALDQMV 120

Query: 395 PGVGSIPLSPYYFWPRKDAWEELRAK 472
           PGVGSIPLSPYYFWPRKDAWEELRAK
Sbjct: 121 PGVGSIPLSPYYFWPRKDAWEELRAK 146

>RRP3_SPIOL (P82412) Plastid-specific 30S ribosomal protein 3, chloroplast|
           precursor (PSRP-3)
          Length = 179

 Score = 97.4 bits (241), Expect = 2e-20
 Identities = 43/62 (69%), Positives = 50/62 (80%)
 Frame = +2

Query: 281 VVESEEYKVEVPEKQDPMLVLKFIWMEKNIGIALDQMVPGVGSIPLSPYYFWPRKDAWEE 460
           +V  E+ KV V     P LVLKFIWMEKNIG+ALDQ +PG G++PLSPYYFWPRKDAWEE
Sbjct: 81  LVNKEKLKVLVKPMDKPRLVLKFIWMEKNIGLALDQTIPGHGTVPLSPYYFWPRKDAWEE 140

Query: 461 LR 466
           L+
Sbjct: 141 LK 142

>RRP32_ARATH (Q9LFV0) Plastid-specific 30S ribosomal protein 3-2, chloroplast|
           precursor (PSRP-3 2)
          Length = 183

 Score = 90.5 bits (223), Expect = 2e-18
 Identities = 37/58 (63%), Positives = 49/58 (84%)
 Frame = +2

Query: 293 EEYKVEVPEKQDPMLVLKFIWMEKNIGIALDQMVPGVGSIPLSPYYFWPRKDAWEELR 466
           ++ +V V   + P +VLKF+WM+K+IG+ALD M+PG G+IPLSPYYFWPRKDAWEEL+
Sbjct: 90  KKMRVLVKPLEKPKVVLKFVWMQKDIGVALDHMIPGFGTIPLSPYYFWPRKDAWEELK 147

>RRP31_ARATH (Q9SX22) Plastid-specific 30S ribosomal protein 3-1, chloroplast|
           precursor (PSRP-3 1)
          Length = 166

 Score = 86.3 bits (212), Expect = 4e-17
 Identities = 38/56 (67%), Positives = 48/56 (85%)
 Frame = +2

Query: 302 KVEVPEKQDPMLVLKFIWMEKNIGIALDQMVPGVGSIPLSPYYFWPRKDAWEELRA 469
           KV  P+++   +VLKF+WMEKNIG+ LDQ VPG G+IPLSPY+FWPRKDAWEEL++
Sbjct: 75  KVVKPDEKS-RVVLKFVWMEKNIGLGLDQHVPGHGTIPLSPYFFWPRKDAWEELKS 129

>RRP3_PORPU (P51351) Probable plastid-specific 30S ribosomal protein 3 (PSRP-3)|
          Length = 99

 Score = 63.2 bits (152), Expect = 3e-10
 Identities = 27/44 (61%), Positives = 36/44 (81%)
 Frame = +2

Query: 341 LKFIWMEKNIGIALDQMVPGVGSIPLSPYYFWPRKDAWEELRAK 472
           LK +W+E NI IA+DQ+V G G+ PL+ Y+FWPR DAWEEL+A+
Sbjct: 6   LKVLWLENNIAIAIDQIV-GNGTSPLTSYFFWPRNDAWEELKAE 48

>RRP3_MESVI (Q9MUN2) Probable plastid-specific 30S ribosomal protein 3 (PSRP-3)|
          Length = 123

 Score = 62.4 bits (150), Expect = 6e-10
 Identities = 25/43 (58%), Positives = 35/43 (81%)
 Frame = +2

Query: 338 VLKFIWMEKNIGIALDQMVPGVGSIPLSPYYFWPRKDAWEELR 466
           VLKF+W+EKN+ + +DQ V   G+ P++ Y+FWPRKDAWEEL+
Sbjct: 22  VLKFLWLEKNLAVTVDQ-VTNRGNSPITEYFFWPRKDAWEELK 63

>RRP3_PROMP (Q7V048) Probable 30S ribosomal protein PSRP-3 (Ycf65-like protein)|
          Length = 126

 Score = 62.0 bits (149), Expect = 8e-10
 Identities = 24/53 (45%), Positives = 39/53 (73%)
 Frame = +2

Query: 314 PEKQDPMLVLKFIWMEKNIGIALDQMVPGVGSIPLSPYYFWPRKDAWEELRAK 472
           P+  +   ++K +W+  N+ +A+DQ+V G GS PL+ YYFWPR DAWE+L+++
Sbjct: 24  PKPDEGRFIIKILWLPDNVALAVDQIVGG-GSSPLTAYYFWPRDDAWEKLKSE 75

>RRP3_ANASP (Q8YSC1) Probable 30S ribosomal protein PSRP-3 (Ycf65-like protein)|
          Length = 99

 Score = 60.8 bits (146), Expect = 2e-09
 Identities = 23/43 (53%), Positives = 36/43 (83%)
 Frame = +2

Query: 338 VLKFIWMEKNIGIALDQMVPGVGSIPLSPYYFWPRKDAWEELR 466
           +LK +W+++N+ +A+DQ+V G G+ PL+ Y+FWPR DAWEEL+
Sbjct: 5   ILKILWLDENVALAVDQVV-GKGTSPLTKYFFWPRNDAWEELK 46

>RRP3_GUITH (O78422) Probable plastid-specific 30S ribosomal protein 3 (PSRP-3)|
          Length = 99

 Score = 59.7 bits (143), Expect = 4e-09
 Identities = 22/48 (45%), Positives = 37/48 (77%)
 Frame = +2

Query: 329 PMLVLKFIWMEKNIGIALDQMVPGVGSIPLSPYYFWPRKDAWEELRAK 472
           P   LK +W++ N+ +A+DQ++ G G+ PL+ Y+FWPR DAWE+++A+
Sbjct: 2   PKFTLKVLWLDNNVAVAVDQII-GNGTSPLTCYFFWPRNDAWEQVKAE 48

>RRP3_EUGGA (Q9BAC5) Probable plastid-specific 30S ribosomal protein 3 (PSRP-3)|
          Length = 103

 Score = 59.7 bits (143), Expect = 4e-09
 Identities = 24/44 (54%), Positives = 35/44 (79%)
 Frame = +2

Query: 335 LVLKFIWMEKNIGIALDQMVPGVGSIPLSPYYFWPRKDAWEELR 466
           L+LKF+W+EK+I + LDQ V G    PL+ ++FWP+KDAWEE++
Sbjct: 5   LILKFLWLEKSIAVCLDQKV-GDSITPLTEFFFWPQKDAWEEMK 47

>RRP3_PROMA (Q7VA74) Probable 30S ribosomal protein PSRP-3 (Ycf65-like protein)|
          Length = 126

 Score = 58.9 bits (141), Expect = 6e-09
 Identities = 23/53 (43%), Positives = 38/53 (71%)
 Frame = +2

Query: 314 PEKQDPMLVLKFIWMEKNIGIALDQMVPGVGSIPLSPYYFWPRKDAWEELRAK 472
           P+  +   +LK +W+  N+ +A+DQ+V G G+ PL+ Y+FWPR+DAWE L+ +
Sbjct: 24  PKADEGRFLLKILWLPDNVALAVDQIVGG-GTSPLTAYFFWPREDAWETLKTE 75

>RRP3_SYNY3 (Q55385) Probable 30S ribosomal protein PSRP-3 (Ycf65-like protein)|
          Length = 112

 Score = 58.5 bits (140), Expect = 8e-09
 Identities = 22/43 (51%), Positives = 36/43 (83%)
 Frame = +2

Query: 338 VLKFIWMEKNIGIALDQMVPGVGSIPLSPYYFWPRKDAWEELR 466
           +LK +W+++N+ IA+DQ+V G G+ PL+ Y+FWPR DAW++L+
Sbjct: 15  ILKVLWLDQNVAIAVDQIV-GKGTSPLTSYFFWPRADAWQQLK 56

>RRP3_PROMM (Q7V5U0) Probable 30S ribosomal protein PSRP-3 (Ycf65-like protein)|
          Length = 126

 Score = 58.2 bits (139), Expect = 1e-08
 Identities = 23/53 (43%), Positives = 37/53 (69%)
 Frame = +2

Query: 314 PEKQDPMLVLKFIWMEKNIGIALDQMVPGVGSIPLSPYYFWPRKDAWEELRAK 472
           P+  +   +LK +W+  N+ +A+DQ+V G G  PL+ Y+FWPR+DAWE L+ +
Sbjct: 24  PKADEGRFLLKILWLPDNVALAVDQIVGG-GPSPLTAYFFWPREDAWETLKGE 75

>RRP3_SYNEL (P59327) Probable 30S ribosomal protein PSRP-3 (Ycf65-like protein)|
          Length = 108

 Score = 58.2 bits (139), Expect = 1e-08
 Identities = 24/44 (54%), Positives = 36/44 (81%)
 Frame = +2

Query: 341 LKFIWMEKNIGIALDQMVPGVGSIPLSPYYFWPRKDAWEELRAK 472
           L+ +W+EK++ IA+DQ+V G G+ PL+ Y+FWPR DAWE L+A+
Sbjct: 15  LRVLWLEKDVAIAVDQIV-GKGTSPLTSYFFWPRTDAWELLKAE 57

>RRP3_SYNP7 (O05161) Probable 30S ribosomal protein PSRP-3 (Ycf65-like protein)|
          Length = 112

 Score = 57.0 bits (136), Expect = 2e-08
 Identities = 22/44 (50%), Positives = 34/44 (77%)
 Frame = +2

Query: 341 LKFIWMEKNIGIALDQMVPGVGSIPLSPYYFWPRKDAWEELRAK 472
           +K +W+ +N+ IA+DQ+V G  + PL+ YYFWPR DAWE+L+ +
Sbjct: 19  IKILWLNENVAIAVDQVV-GKATSPLTAYYFWPRHDAWEQLKTE 61

>RRP3_EUGVI (Q9BAB9) Probable plastid-specific 30S ribosomal protein 3 (PSRP-3)|
          Length = 101

 Score = 55.1 bits (131), Expect = 9e-08
 Identities = 21/43 (48%), Positives = 34/43 (79%)
 Frame = +2

Query: 338 VLKFIWMEKNIGIALDQMVPGVGSIPLSPYYFWPRKDAWEELR 466
           VLKF+W+++++ ++LDQ + G    PL+ +YFWP+ DAWEE+R
Sbjct: 5   VLKFLWLQRSVAVSLDQKI-GDNVSPLTEFYFWPQCDAWEEMR 46

>RRP3_EUGST (Q9BAC0) Probable plastid-specific 30S ribosomal protein 3 (PSRP-3)|
          Length = 101

 Score = 54.3 bits (129), Expect = 2e-07
 Identities = 19/43 (44%), Positives = 34/43 (79%)
 Frame = +2

Query: 338 VLKFIWMEKNIGIALDQMVPGVGSIPLSPYYFWPRKDAWEELR 466
           +LKF+W+EK++ + LDQ + G  + P++ ++FWP+ DAWEE++
Sbjct: 5   ILKFLWLEKSVAVGLDQKI-GDRTTPVTEFFFWPQHDAWEEMK 46

>RRP3_GRATL (Q6B913) Probable plastid-specific 30S ribosomal protein 3 (PSRP-3)|
          Length = 99

 Score = 53.5 bits (127), Expect = 3e-07
 Identities = 22/41 (53%), Positives = 29/41 (70%)
 Frame = +2

Query: 344 KFIWMEKNIGIALDQMVPGVGSIPLSPYYFWPRKDAWEELR 466
           K +W+E NI IA+D  + G    PL+ Y+FWPR DAWEEL+
Sbjct: 7   KILWLENNIAIAIDYNI-GNNKSPLTSYFFWPRNDAWEELK 46

>RRP3_CYACA (Q9TLZ0) Probable plastid-specific 30S ribosomal protein 3 (PSRP-3)|
          Length = 101

 Score = 52.4 bits (124), Expect = 6e-07
 Identities = 20/42 (47%), Positives = 31/42 (73%)
 Frame = +2

Query: 341 LKFIWMEKNIGIALDQMVPGVGSIPLSPYYFWPRKDAWEELR 466
           +K +W+  NI IA+D+++ G    P++ YYFWPR DAWE+L+
Sbjct: 6   IKVLWLRNNIAIAVDRLI-GDSLFPMTYYYFWPRTDAWEQLK 46

>RRP3_EUGMU (Q9BAC3) Probable plastid-specific 30S ribosomal protein 3 (PSRP-3)|
          Length = 101

 Score = 50.1 bits (118), Expect = 3e-06
 Identities = 19/43 (44%), Positives = 31/43 (72%)
 Frame = +2

Query: 338 VLKFIWMEKNIGIALDQMVPGVGSIPLSPYYFWPRKDAWEELR 466
           VLKF+ ++K I + LDQ +      PL+ Y+FWP++DAWE+++
Sbjct: 5   VLKFLLIDKVIAVCLDQKISNERLNPLTEYFFWPQRDAWEDMK 47

>RRP3_EUGMY (Q9BAC2) Probable plastid-specific 30S ribosomal protein 3 (PSRP-3)|
          Length = 101

 Score = 43.9 bits (102), Expect = 2e-04
 Identities = 20/44 (45%), Positives = 28/44 (63%), Gaps = 4/44 (9%)
 Frame = +2

Query: 344 KFIW----MEKNIGIALDQMVPGVGSIPLSPYYFWPRKDAWEEL 463
           KF+W    +E  I I LDQ +    S P++ Y+FWP+ DAW+EL
Sbjct: 3   KFVWKVVCLENKIAICLDQQLADKTS-PVTEYFFWPQSDAWDEL 45

>EXTN_MAIZE (P14918) Extensin precursor (Proline-rich glycoprotein)|
          Length = 267

 Score = 32.0 bits (71), Expect = 0.83
 Identities = 15/54 (27%), Positives = 21/54 (38%)
 Frame = +1

Query: 22  PELHHAPDVRPPRYYAGPRVAAPRLPAQTFHTLLLFQPRPPQEQEATPSLAPQP 183
           P  H  P   PP Y   P+   P+    T+       P+PP  +   P+  P P
Sbjct: 170 PPTHPTPKPTPPTYTPSPKPPTPKPTPPTYTP----SPKPPTPKPTPPTYTPSP 219

>QUEA_VIBPA (Q87S37) S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC|
           5.-.-.-) (Queuosine biosynthesis protein queA)
          Length = 350

 Score = 31.6 bits (70), Expect = 1.1
 Identities = 19/60 (31%), Positives = 31/60 (51%)
 Frame = +2

Query: 281 VVESEEYKVEVPEKQDPMLVLKFIWMEKNIGIALDQMVPGVGSIPLSPYYFWPRKDAWEE 460
           V E++EY  E+  + D +  LKF     N    +  ++  +G +PL PY   P +DA +E
Sbjct: 109 VGENDEYSAEMVARHDALFELKF-----NSDKTVLDILEEIGHMPLPPYIDRPDEDADKE 163

>PKAA_STRCO (P54739) Serine/threonine protein kinase pkaA (EC 2.7.11.1)|
          Length = 543

 Score = 31.6 bits (70), Expect = 1.1
 Identities = 15/52 (28%), Positives = 25/52 (48%)
 Frame = +1

Query: 22  PELHHAPDVRPPRYYAGPRVAAPRLPAQTFHTLLLFQPRPPQEQEATPSLAP 177
           P+ +  P  + P+ YA P    P+ P +        +PRPP+++ A P   P
Sbjct: 438 PQRYATPQPQQPQRYAPPPAPEPQQPRR--------EPRPPRQRSANPMRIP 481

>EXTN_TOBAC (P13983) Extensin precursor (Cell wall hydroxyproline-rich|
           glycoprotein)
          Length = 620

 Score = 30.8 bits (68), Expect = 1.9
 Identities = 16/54 (29%), Positives = 23/54 (42%)
 Frame = +1

Query: 22  PELHHAPDVRPPRYYAGPRVAAPRLPAQTFHTLLLFQPRPPQEQEATPSLAPQP 183
           P  +  P   PP Y   P   +P  P+       ++ P PPQ Q   P+ +P P
Sbjct: 459 PPAYAQPPPPPPTYSPPPPAYSPPPPSP------IYSPPPPQVQPLPPTFSPPP 506

>ZIPA_SALTY (P0A2N6) Cell division protein zipA homolog|
          Length = 328

 Score = 30.8 bits (68), Expect = 1.9
 Identities = 23/61 (37%), Positives = 27/61 (44%), Gaps = 16/61 (26%)
 Frame = +1

Query: 49  RPPRYYAGPRVAAP-----------RLPAQTFHTLLLFQP-----RPPQEQEATPSLAPQ 180
           +PP   A PR AAP           + P Q        QP     +PPQ+Q A PS APQ
Sbjct: 93  QPPYASAQPRPAAPPQPQAPMQQPVQQPVQPAPQPQQVQPSAPPVQPPQQQPAPPSQAPQ 152

Query: 181 P 183
           P
Sbjct: 153 P 153

>ZIPA_SALTI (P0A2N7) Cell division protein zipA homolog|
          Length = 328

 Score = 30.8 bits (68), Expect = 1.9
 Identities = 23/61 (37%), Positives = 27/61 (44%), Gaps = 16/61 (26%)
 Frame = +1

Query: 49  RPPRYYAGPRVAAP-----------RLPAQTFHTLLLFQP-----RPPQEQEATPSLAPQ 180
           +PP   A PR AAP           + P Q        QP     +PPQ+Q A PS APQ
Sbjct: 93  QPPYASAQPRPAAPPQPQAPMQQPVQQPVQPAPQPQQVQPSAPPVQPPQQQPAPPSQAPQ 152

Query: 181 P 183
           P
Sbjct: 153 P 153

>QUEA_VIBF1 (Q5E3D1) S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC|
           5.-.-.-) (Queuosine biosynthesis protein queA)
          Length = 350

 Score = 30.0 bits (66), Expect = 3.2
 Identities = 18/58 (31%), Positives = 34/58 (58%)
 Frame = +2

Query: 287 ESEEYKVEVPEKQDPMLVLKFIWMEKNIGIALDQMVPGVGSIPLSPYYFWPRKDAWEE 460
           E++E++ E+  + D +  ++F   +K + I LD+    +G +PL PY   P +DA +E
Sbjct: 111 ENQEHEAEMVARHDTLFEIRFTSDKKVLDI-LDE----IGHMPLPPYIDRPDEDADKE 163

>TAL_HAEIN (P45055) Transaldolase (EC 2.2.1.2)|
          Length = 316

 Score = 30.0 bits (66), Expect = 3.2
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = +2

Query: 281 VVESEEYKVEVPEKQDPMLVLKFIWMEKNIGIALDQMVPGV 403
           +V   EYK EV  K  P+   +F W   +  +A++++  G+
Sbjct: 258 LVRKLEYKGEVKAKPQPLTEAEFYWQHNSDAMAVEKLAEGI 298

>TAL_HAEI8 (Q4QLG9) Transaldolase (EC 2.2.1.2)|
          Length = 317

 Score = 29.6 bits (65), Expect = 4.1
 Identities = 11/41 (26%), Positives = 22/41 (53%)
 Frame = +2

Query: 281 VVESEEYKVEVPEKQDPMLVLKFIWMEKNIGIALDQMVPGV 403
           ++   EYK EV  K  P+   +F W   +  +A++++  G+
Sbjct: 259 LIRKLEYKGEVKAKPQPLTEAEFYWQHNSDAMAVEKLAEGI 299

>QUEA_PHOPR (Q6LU70) S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC|
           5.-.-.-) (Queuosine biosynthesis protein queA)
          Length = 351

 Score = 29.3 bits (64), Expect = 5.4
 Identities = 16/58 (27%), Positives = 32/58 (55%)
 Frame = +2

Query: 287 ESEEYKVEVPEKQDPMLVLKFIWMEKNIGIALDQMVPGVGSIPLSPYYFWPRKDAWEE 460
           E+++Y+ E+  + D +  ++F     N    + +++  VG +PL PY   P +DA +E
Sbjct: 111 ENDDYQAEMIARHDTLFEIRF-----NSDKTVLEILEEVGHMPLPPYIDRPDEDADKE 163

>TAL_MANSM (Q65PZ8) Transaldolase (EC 2.2.1.2)|
          Length = 317

 Score = 28.9 bits (63), Expect = 7.1
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +2

Query: 296 EYKVEVPEKQDPMLVLKFIWMEKNIGIALDQMVPGV 403
           +YK EV  K  P+   +F W   N  +A+D++  G+
Sbjct: 264 DYKGEVKPKPAPLTESQFYWEHNNDPMAVDKLAEGI 299

>EXEC1_ARATH (Q93YW0) EXECUTER1 protein, chloroplast precursor|
          Length = 684

 Score = 28.5 bits (62), Expect = 9.2
 Identities = 20/49 (40%), Positives = 23/49 (46%), Gaps = 10/49 (20%)
 Frame = -1

Query: 470 SLSVPPMH------LSAARSSR----GLRGCYQHPEPSGQALCQCSSPS 354
           SLS PP         ++A SSR      R  Y H  P   ALC+CSS S
Sbjct: 3   SLSTPPSQNLAFSPAASATSSRLTPSSKRSFYPHRLPDPTALCRCSSSS 51


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,160,911
Number of Sequences: 219361
Number of extensions: 835125
Number of successful extensions: 2910
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 2650
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2865
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3130907202
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)