ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name baet07g01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|AJ222779.1|HVJ222779 Hordeum vulgare mRNA for hypothetical p... 523 e-145
2ref|XM_472755.1| Oryza sativa (japonica cultivar-group), predic... 172 7e-40
3dbj|AK068022.1| Oryza sativa (japonica cultivar-group) cDNA clon... 172 7e-40
4emb|AL606460.3|OSJN00003 Oryza sativa genomic DNA, chromosome 4,... 167 4e-38
5dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 167 4e-38
6dbj|AK058660.1| Oryza sativa (japonica cultivar-group) cDNA clon... 161 3e-36
7gb|AY106548.1| Zea mays PCO085040 mRNA sequence 141 2e-30
8gb|DQ415920.1| Cleome spinosa clone BAC Cs3, complete sequence 48 0.026
9gb|AF239218.1| Spinacia oleracea plastid-specific ribosomal prot... 48 0.026
10ref|XM_751585.1| Ustilago maydis 521 hypothetical protein (UM005... 44 0.41
11ref|NM_017105.1| Rattus norvegicus bone morphogenetic protein 3 ... 44 0.41
12dbj|D63860.1|RATPBMP3 Rattus norvegicus mRNA for prepro bone mor... 44 0.41
13ref|NM_024475.3| Mus musculus ubiquitin-like domain containing C... 42 1.6
14gb|AC116739.13| Mus musculus chromosome 17, clone RP23-435B24, c... 42 1.6
15ref|XR_001770.1| PREDICTED: Mus musculus similar to ubiquitin-li... 42 1.6
16gb|BC083331.1| Mus musculus ubiquitin-like domain containing CTD... 42 1.6
17gb|BC085111.1| Mus musculus ubiquitin-like domain containing CTD... 42 1.6
18gb|BC056652.1| Mus musculus ubiquitin-like domain containing CTD... 42 1.6
19emb|BX255277.5| Mouse DNA sequence from clone RP23-478B14 on chr... 42 1.6
20emb|AL939112.1|SCO939112 Streptomyces coelicolor A3(2) complete ... 42 1.6
21gb|AC097381.3| Homo sapiens BAC clone RP11-338K13 from 4, comple... 42 1.6
22dbj|AK153998.1| Mus musculus 2 days neonate thymus thymic cells ... 42 1.6
23dbj|AK147744.1| Mus musculus melanocyte cDNA, RIKEN full-length ... 42 1.6
24dbj|AK050031.1| Mus musculus adult male liver tumor cDNA, RIKEN ... 42 1.6
25dbj|AK043952.1| Mus musculus 10 days neonate cortex cDNA, RIKEN ... 42 1.6
26dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 42 1.6
27gb|AC019068.8| Homo sapiens BAC clone RP11-201F21 from 2, comple... 42 1.6
28gb|BC106093.1| Mus musculus ubiquitin-like domain containing CTD... 42 1.6
29emb|AL669944.8| Mouse DNA sequence from clone RP23-388G23 on chr... 42 1.6
30ref|NM_121581.2| Arabidopsis thaliana structural constituent of ... 40 6.4
31gb|AC102923.10| Mus musculus chromosome 1, clone RP24-262J2, com... 40 6.4
32ref|XM_589072.2| PREDICTED: Bos taurus similar to myosin, heavy ... 40 6.4
33gb|BC065536.1| Homo sapiens dystonin, mRNA (cDNA clone IMAGE:600... 40 6.4
34ref|XM_954375.1| Neurospora crassa OR74A hypothetical protein (N... 40 6.4
35ref|XM_331121.1| Neurospora crassa OR74A hypothetical protein (N... 40 6.4
36ref|XM_748213.1| Aspergillus fumigatus Af293 U1 small nuclear ri... 40 6.4
37gb|AC134559.5| Mus musculus BAC clone RP24-332C4 from chromosome... 40 6.4
38gb|AC125181.4| Mus musculus BAC clone RP23-324L6 from chromosome... 40 6.4
39emb|AL096710.8|HSDJ61B2 Human DNA sequence from clone RP1-61B2 o... 40 6.4
40emb|AL391144.1|ATF14F8 Arabidopsis thaliana DNA chromosome 5, BA... 40 6.4
41emb|CR352305.6| Zebrafish DNA sequence from clone CH211-95N4 in ... 40 6.4
42dbj|AK123594.1| Homo sapiens cDNA FLJ41600 fis, clone CTONG2026920 40 6.4
43emb|BX119916.10| Zebrafish DNA sequence from clone CH211-202I5 i... 40 6.4
44gb|AC012181.8| Homo sapiens chromosome 16 clone RP11-325K4, comp... 40 6.4
45gb|BT003711.1| Arabidopsis thaliana At5g15760 mRNA, complete cds 40 6.4
46gb|AC007238.3| Homo sapiens BAC clone RP11-19M18 from 2, complet... 40 6.4
47gb|AC067937.1|AC067937 Neurospora crassa chromosome 7, clone X11... 40 6.4
48emb|BX908788.1| Neurospora crassa DNA linkage group VII BAC clon... 40 6.4
49dbj|AK117858.1| Arabidopsis thaliana At5g15760 mRNA for putative... 40 6.4
50emb|CR388132.9| Zebrafish DNA sequence from clone DKEY-23A23 in ... 40 6.4
51emb|BX088719.6| Zebrafish DNA sequence from clone CH211-207H2 in... 40 6.4
52emb|AL928628.9| Zebrafish DNA sequence from clone DKEY-5G18 in l... 40 6.4
53emb|AL591469.9| Mouse DNA sequence from clone RP23-390D17 on chr... 40 6.4 
>emb|AJ222779.1|HVJ222779 Hordeum vulgare mRNA for hypothetical protein (ORF1), clone RG49
          Length = 765

 Score =  523 bits (264), Expect = e-145
 Identities = 264/264 (100%)
 Strand = Plus / Plus

                                                                       
Query: 210 tcgaagcgggggagccatacttcggtttgggggacgacgagccacttggcggagaaggag 269
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 196 tcgaagcgggggagccatacttcggtttgggggacgacgagccacttggcggagaaggag 255

                                                                       
Query: 270 acgcggaagccgtggtcgaaagcgaggagtacaaggtggaggtgcctgaaaagcaggacc 329
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 acgcggaagccgtggtcgaaagcgaggagtacaaggtggaggtgcctgaaaagcaggacc 315

                                                                       
Query: 330 cgatgctggtactgaagttcatatggatggagaagaacattggcatagcgcttgaccaga 389
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 cgatgctggtactgaagttcatatggatggagaagaacattggcatagcgcttgaccaga 375

                                                                       
Query: 390 tggttccgggtgttggtagcatccccttaagcccctactacttctggccgcggaaagatg 449
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 tggttccgggtgttggtagcatccccttaagcccctactacttctggccgcggaaagatg 435

                                   
Query: 450 catgggaggaactgagagcgaaac 473
           ||||||||||||||||||||||||
Sbjct: 436 catgggaggaactgagagcgaaac 459



 Score =  339 bits (171), Expect = 5e-90
 Identities = 171/171 (100%)
 Strand = Plus / Plus

                                                                       
Query: 15  ctcttatccggaactacaccatgctcccgatgtccgtccaccccgctactacgccggccc 74
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   ctcttatccggaactacaccatgctcccgatgtccgtccaccccgctactacgccggccc 60

                                                                       
Query: 75  tcgcgtcgcggccccgcgtctccctgcccagaccttccacaccctcctcctcttccagcc 134
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  tcgcgtcgcggccccgcgtctccctgcccagaccttccacaccctcctcctcttccagcc 120

                                                              
Query: 135 tcgtccacctcaagagcaggaggccaccccttcgctcgctccgcagcctca 185
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tcgtccacctcaagagcaggaggccaccccttcgctcgctccgcagcctca 171
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>ref|XM_472755.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 552

 Score =  172 bits (87), Expect = 7e-40
 Identities = 153/175 (87%)
 Strand = Plus / Plus

                                                                       
Query: 294 aggagtacaaggtggaggtgcctgaaaagcaggacccgatgctggtactgaagttcatat 353
           |||||||||||||  |||||||||||| |||||| || ||||| || |||||||||||||
Sbjct: 266 aggagtacaaggttaaggtgcctgaaaggcaggatccaatgcttgttctgaagttcatat 325

                                                                       
Query: 354 ggatggagaagaacattggcatagcgcttgaccagatggttccgggtgttggtagcatcc 413
           ||||||||||||||||||||||||| || |||||| ||||||| ||   ||| ||||| |
Sbjct: 326 ggatggagaagaacattggcatagccctcgaccagttggttcccggctatggcagcattc 385

                                                                  
Query: 414 ccttaagcccctactacttctggccgcggaaagatgcatgggaggaactgagagc 468
           | |||||||| |||||||||||||| ||||||||||| |||||||| || |||||
Sbjct: 386 cgttaagcccatactacttctggccacggaaagatgcctgggaggagctaagagc 440



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 55/63 (87%)
 Strand = Plus / Plus

                                                                       
Query: 42  cgatgtccgtccaccccgctactacgccggccctcgcgtcgcggccccgcgtctccctgc 101
           |||||||||||||||||||  | |||||||||||||| |||||  ||||| |||||| ||
Sbjct: 8   cgatgtccgtccaccccgccgccacgccggccctcgcctcgcgcgcccgcatctcccggc 67

              
Query: 102 cca 104
           |||
Sbjct: 68  cca 70



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 41/46 (89%)
 Strand = Plus / Plus

                                                         
Query: 132 gcctcgtccacctcaagagcaggaggccaccccttcgctcgctccg 177
           ||||||||||||||   ||||||||||  |||||||||||||||||
Sbjct: 119 gcctcgtccacctcggcagcaggaggcttccccttcgctcgctccg 164
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>dbj|AK068022.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013130N24, full
           insert sequence
          Length = 805

 Score =  172 bits (87), Expect = 7e-40
 Identities = 153/175 (87%)
 Strand = Plus / Plus

                                                                       
Query: 294 aggagtacaaggtggaggtgcctgaaaagcaggacccgatgctggtactgaagttcatat 353
           |||||||||||||  |||||||||||| |||||| || ||||| || |||||||||||||
Sbjct: 303 aggagtacaaggttaaggtgcctgaaaggcaggatccaatgcttgttctgaagttcatat 362

                                                                       
Query: 354 ggatggagaagaacattggcatagcgcttgaccagatggttccgggtgttggtagcatcc 413
           ||||||||||||||||||||||||| || |||||| ||||||| ||   ||| ||||| |
Sbjct: 363 ggatggagaagaacattggcatagccctcgaccagttggttcccggctatggcagcattc 422

                                                                  
Query: 414 ccttaagcccctactacttctggccgcggaaagatgcatgggaggaactgagagc 468
           | |||||||| |||||||||||||| ||||||||||| |||||||| || |||||
Sbjct: 423 cgttaagcccatactacttctggccacggaaagatgcctgggaggagctaagagc 477



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 55/63 (87%)
 Strand = Plus / Plus

                                                                       
Query: 42  cgatgtccgtccaccccgctactacgccggccctcgcgtcgcggccccgcgtctccctgc 101
           |||||||||||||||||||  | |||||||||||||| |||||  ||||| |||||| ||
Sbjct: 45  cgatgtccgtccaccccgccgccacgccggccctcgcctcgcgcgcccgcatctcccggc 104

              
Query: 102 cca 104
           |||
Sbjct: 105 cca 107



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 41/46 (89%)
 Strand = Plus / Plus

                                                         
Query: 132 gcctcgtccacctcaagagcaggaggccaccccttcgctcgctccg 177
           ||||||||||||||   ||||||||||  |||||||||||||||||
Sbjct: 156 gcctcgtccacctcggcagcaggaggcttccccttcgctcgctccg 201
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>emb|AL606460.3|OSJN00003 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0072F16,
             complete sequence
          Length = 176383

 Score =  167 bits (84), Expect = 4e-38
 Identities = 150/172 (87%)
 Strand = Plus / Plus

                                                                         
Query: 297   agtacaaggtggaggtgcctgaaaagcaggacccgatgctggtactgaagttcatatgga 356
             ||||||||||  |||||||||||| |||||| || ||||| || ||||||||||||||||
Sbjct: 97619 agtacaaggttaaggtgcctgaaaggcaggatccaatgcttgttctgaagttcatatgga 97678

                                                                         
Query: 357   tggagaagaacattggcatagcgcttgaccagatggttccgggtgttggtagcatcccct 416
             |||||||||||||||||||||| || |||||| ||||||| ||   ||| ||||| || |
Sbjct: 97679 tggagaagaacattggcatagccctcgaccagttggttcccggctatggcagcattccgt 97738

                                                                 
Query: 417   taagcccctactacttctggccgcggaaagatgcatgggaggaactgagagc 468
             ||||||| |||||||||||||| ||||||||||| |||||||| || |||||
Sbjct: 97739 taagcccatactacttctggccacggaaagatgcctgggaggagctaagagc 97790



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 55/63 (87%)
 Strand = Plus / Plus

                                                                         
Query: 42    cgatgtccgtccaccccgctactacgccggccctcgcgtcgcggccccgcgtctccctgc 101
             |||||||||||||||||||  | |||||||||||||| |||||  ||||| |||||| ||
Sbjct: 96514 cgatgtccgtccaccccgccgccacgccggccctcgcctcgcgcgcccgcatctcccggc 96573

                
Query: 102   cca 104
             |||
Sbjct: 96574 cca 96576



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 41/46 (89%)
 Strand = Plus / Plus

                                                           
Query: 132   gcctcgtccacctcaagagcaggaggccaccccttcgctcgctccg 177
             ||||||||||||||   ||||||||||  |||||||||||||||||
Sbjct: 96625 gcctcgtccacctcggcagcaggaggcttccccttcgctcgctccg 96670
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  167 bits (84), Expect = 4e-38
 Identities = 150/172 (87%)
 Strand = Plus / Plus

                                                                            
Query: 297      agtacaaggtggaggtgcctgaaaagcaggacccgatgctggtactgaagttcatatgga 356
                ||||||||||  |||||||||||| |||||| || ||||| || ||||||||||||||||
Sbjct: 23003163 agtacaaggttaaggtgcctgaaaggcaggatccaatgcttgttctgaagttcatatgga 23003222

                                                                            
Query: 357      tggagaagaacattggcatagcgcttgaccagatggttccgggtgttggtagcatcccct 416
                |||||||||||||||||||||| || |||||| ||||||| ||   ||| ||||| || |
Sbjct: 23003223 tggagaagaacattggcatagccctcgaccagttggttcccggctatggcagcattccgt 23003282

                                                                    
Query: 417      taagcccctactacttctggccgcggaaagatgcatgggaggaactgagagc 468
                ||||||| |||||||||||||| ||||||||||| |||||||| || |||||
Sbjct: 23003283 taagcccatactacttctggccacggaaagatgcctgggaggagctaagagc 23003334



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 55/63 (87%)
 Strand = Plus / Plus

                                                                            
Query: 42       cgatgtccgtccaccccgctactacgccggccctcgcgtcgcggccccgcgtctccctgc 101
                |||||||||||||||||||  | |||||||||||||| |||||  ||||| |||||| ||
Sbjct: 23002058 cgatgtccgtccaccccgccgccacgccggccctcgcctcgcgcgcccgcatctcccggc 23002117

                   
Query: 102      cca 104
                |||
Sbjct: 23002118 cca 23002120



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 41/46 (89%)
 Strand = Plus / Plus

                                                              
Query: 132      gcctcgtccacctcaagagcaggaggccaccccttcgctcgctccg 177
                ||||||||||||||   ||||||||||  |||||||||||||||||
Sbjct: 23002169 gcctcgtccacctcggcagcaggaggcttccccttcgctcgctccg 23002214
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>dbj|AK058660.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-018-G01, full
           insert sequence
          Length = 435

 Score =  161 bits (81), Expect = 3e-36
 Identities = 147/169 (86%)
 Strand = Plus / Plus

                                                                       
Query: 300 acaaggtggaggtgcctgaaaagcaggacccgatgctggtactgaagttcatatggatgg 359
           |||||||  |||||||||||| |||||| || ||||| || |||||||||||||||||||
Sbjct: 1   acaaggttaaggtgcctgaaaggcaggatccaatgcttgttctgaagttcatatggatgg 60

                                                                       
Query: 360 agaagaacattggcatagcgcttgaccagatggttccgggtgttggtagcatccccttaa 419
           ||||||||||||||||||| || |||||| ||||||| ||   ||| ||||| || ||||
Sbjct: 61  agaagaacattggcatagccctcgaccagttggttcccggctatggcagcattccgttaa 120

                                                            
Query: 420 gcccctactacttctggccgcggaaagatgcatgggaggaactgagagc 468
           |||| |||||||||||||| ||||||||||| |||||||| || |||||
Sbjct: 121 gcccatactacttctggccacggaaagatgcctgggaggagctaagagc 169
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>gb|AY106548.1| Zea mays PCO085040 mRNA sequence
          Length = 666

 Score =  141 bits (71), Expect = 2e-30
 Identities = 143/167 (85%)
 Strand = Plus / Plus

                                                                       
Query: 302 aaggtggaggtgcctgaaaagcaggacccgatgctggtactgaagttcatatggatggag 361
           ||||||| |||||| || |  |||||||||||||||||||| |||||||| |||||||||
Sbjct: 336 aaggtggtggtgcccgagagacaggacccgatgctggtactcaagttcatctggatggag 395

                                                                       
Query: 362 aagaacattggcatagcgcttgaccagatggttccgggtgttggtagcatccccttaagc 421
           |||||||| |||||||| || |||||| ||||||| ||   ||| |||||||| || |||
Sbjct: 396 aagaacatcggcatagcactcgaccagctggttcctggctatggcagcatcccgttgagc 455

                                                          
Query: 422 ccctactacttctggccgcggaaagatgcatgggaggaactgagagc 468
           || |||||||||||||||||||| || || |||||||| || |||||
Sbjct: 456 ccgtactacttctggccgcggaaggacgcgtgggaggagcttagagc 502



 Score = 48.1 bits (24), Expect = 0.026
 Identities = 39/44 (88%)
 Strand = Plus / Plus

                                                       
Query: 30  acaccatgctcccgatgtccgtccaccccgctactacgccggcc 73
           ||||||||||||| ||| ||||||||||| | || |||||||||
Sbjct: 76  acaccatgctcccaatggccgtccaccccaccaccacgccggcc 119
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>gb|DQ415920.1| Cleome spinosa clone BAC Cs3, complete sequence
          Length = 141360

 Score = 48.1 bits (24), Expect = 0.026
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                             
Query: 425   tactacttctggccgcggaaagatgcatggga 456
             ||||||||||||||| |||||||||| |||||
Sbjct: 46880 tactacttctggccgaggaaagatgcttggga 46911
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>gb|AF239218.1| Spinacia oleracea plastid-specific ribosomal protein 3 precursor
           (Psrp-3) mRNA, complete cds; nuclear gene for
           chloroplast product
          Length = 752

 Score = 48.1 bits (24), Expect = 0.026
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                       
Query: 342 tgaagttcatatggatggagaagaacat 369
           |||||||||||||||||||||| |||||
Sbjct: 342 tgaagttcatatggatggagaaaaacat 369
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>ref|XM_751585.1| Ustilago maydis 521 hypothetical protein (UM00531.1) partial mRNA
          Length = 2487

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 124  ctcttccagcctcgtccacctc 145
            ||||||||||||||||||||||
Sbjct: 1321 ctcttccagcctcgtccacctc 1300
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>ref|NM_017105.1| Rattus norvegicus bone morphogenetic protein 3 (Bmp3), mRNA
          Length = 2158

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 67  gccggccctcgcgtcgcggccccgcg 92
           |||| |||||||||||||||||||||
Sbjct: 445 gccgaccctcgcgtcgcggccccgcg 470
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>dbj|D63860.1|RATPBMP3 Rattus norvegicus mRNA for prepro bone morphogenetic protein-3
          Length = 2158

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 67  gccggccctcgcgtcgcggccccgcg 92
           |||| |||||||||||||||||||||
Sbjct: 445 gccgaccctcgcgtcgcggccccgcg 470
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>ref|NM_024475.3| Mus musculus ubiquitin-like domain containing CTD phosphatase 1
           (Ublcp1), mRNA
          Length = 2055

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 294 aggagtacaaggtggaggtgc 314
           |||||||||||||||||||||
Sbjct: 435 aggagtacaaggtggaggtgc 455
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>gb|AC116739.13| Mus musculus chromosome 17, clone RP23-435B24, complete sequence
          Length = 222382

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 378  cgcttgaccagatggttccgg 398
            |||||||||||||||||||||
Sbjct: 8872 cgcttgaccagatggttccgg 8852
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>ref|XR_001770.1| PREDICTED: Mus musculus similar to ubiquitin-like domain containing
           CTD phosphatase 1 (LOC665689), mRNA
          Length = 2073

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 294 aggagtacaaggtggaggtgc 314
           |||||||||||||||||||||
Sbjct: 452 aggagtacaaggtggaggtgc 472
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>gb|BC083331.1| Mus musculus ubiquitin-like domain containing CTD phosphatase 1,
           mRNA (cDNA clone IMAGE:6413630), partial cds
          Length = 1818

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 294 aggagtacaaggtggaggtgc 314
           |||||||||||||||||||||
Sbjct: 193 aggagtacaaggtggaggtgc 213
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>gb|BC085111.1| Mus musculus ubiquitin-like domain containing CTD phosphatase 1,
           mRNA (cDNA clone MGC:103277 IMAGE:30735741), complete
           cds
          Length = 2055

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 294 aggagtacaaggtggaggtgc 314
           |||||||||||||||||||||
Sbjct: 435 aggagtacaaggtggaggtgc 455
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>gb|BC056652.1| Mus musculus ubiquitin-like domain containing CTD phosphatase 1,
           mRNA (cDNA clone IMAGE:5038067), partial cds
          Length = 1653

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 294 aggagtacaaggtggaggtgc 314
           |||||||||||||||||||||
Sbjct: 33  aggagtacaaggtggaggtgc 53
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>emb|BX255277.5| Mouse DNA sequence from clone RP23-478B14 on chromosome 11, complete
            sequence
          Length = 169765

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 294  aggagtacaaggtggaggtgc 314
            |||||||||||||||||||||
Sbjct: 4193 aggagtacaaggtggaggtgc 4173
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>emb|AL939112.1|SCO939112 Streptomyces coelicolor A3(2) complete genome; segment 9/29
          Length = 300800

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 263   gaaggagacgcggaagccgtg 283
             |||||||||||||||||||||
Sbjct: 58051 gaaggagacgcggaagccgtg 58031
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>gb|AC097381.3| Homo sapiens BAC clone RP11-338K13 from 4, complete sequence
          Length = 214098

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 96     ccctgcccagaccttccacaccctc 120
              |||| ||||||||||||||||||||
Sbjct: 184238 ccctccccagaccttccacaccctc 184262
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>dbj|AK153998.1| Mus musculus 2 days neonate thymus thymic cells cDNA, RIKEN
           full-length enriched library, clone:E430020D03
           product:Weakly similar to putative ubiquitin
           carboxyl-terminal hydrolase C6G9.08, full insert
           sequence
          Length = 2048

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 294 aggagtacaaggtggaggtgc 314
           |||||||||||||||||||||
Sbjct: 444 aggagtacaaggtggaggtgc 464
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>dbj|AK147744.1| Mus musculus melanocyte cDNA, RIKEN full-length enriched library,
           clone:G270019L10 product:Weakly similar to putative
           ubiquitin carboxyl-terminal hydrolase C6G9.08, full
           insert sequence
          Length = 1824

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 294 aggagtacaaggtggaggtgc 314
           |||||||||||||||||||||
Sbjct: 480 aggagtacaaggtggaggtgc 500
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>dbj|AK050031.1| Mus musculus adult male liver tumor cDNA, RIKEN full-length
           enriched library, clone:C730004P03 product:hypothetical
           Ubiquitin domain containing protein, full insert
           sequence
          Length = 1179

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 294 aggagtacaaggtggaggtgc 314
           |||||||||||||||||||||
Sbjct: 443 aggagtacaaggtggaggtgc 463
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>dbj|AK043952.1| Mus musculus 10 days neonate cortex cDNA, RIKEN full-length
           enriched library, clone:A830058J21 product:weakly
           similar to PUTATIVE UBIQUITIN CARBOXYL-TERMINAL
           HYDROLASE C6G9.08 (EC 3.1.2.15) (UBIQUITIN
           THIOLESTERASE) (UBIQUITIN-SPECIFIC PROCESSING PROTEASE)
           (DEUBIQUITINATING ENZYME) [Schizosaccharomyces pombe],
           full insert sequence
          Length = 1465

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 294 aggagtacaaggtggaggtgc 314
           |||||||||||||||||||||
Sbjct: 439 aggagtacaaggtggaggtgc 459
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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 263     gaaggagacgcggaagccgtg 283
               |||||||||||||||||||||
Sbjct: 7073451 gaaggagacgcggaagccgtg 7073471
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>gb|AC019068.8| Homo sapiens BAC clone RP11-201F21 from 2, complete sequence
          Length = 131359

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 409   catccccttaagcccctacta 429
             |||||||||||||||||||||
Sbjct: 56830 catccccttaagcccctacta 56810
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>gb|BC106093.1| Mus musculus ubiquitin-like domain containing CTD phosphatase 1,
           mRNA (cDNA clone MGC:117826 IMAGE:5098953), complete cds
          Length = 1294

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 294 aggagtacaaggtggaggtgc 314
           |||||||||||||||||||||
Sbjct: 409 aggagtacaaggtggaggtgc 429
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>emb|AL669944.8| Mouse DNA sequence from clone RP23-388G23 on chromosome 11, complete
             sequence
          Length = 76047

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 294   aggagtacaaggtggaggtgc 314
             |||||||||||||||||||||
Sbjct: 58656 aggagtacaaggtggaggtgc 58636
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>ref|NM_121581.2| Arabidopsis thaliana structural constituent of ribosome AT5G15760
           mRNA, complete cds
          Length = 747

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 425 tactacttctggccgcggaaagatgcatggga 456
           ||||||||||||||  |||||||||| |||||
Sbjct: 447 tactacttctggcctaggaaagatgcttggga 478
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>gb|AC102923.10| Mus musculus chromosome 1, clone RP24-262J2, complete sequence
          Length = 159541

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 107   ccttccacaccctcctcctcttcc 130
             |||||| |||||||||||||||||
Sbjct: 33884 ccttcctcaccctcctcctcttcc 33907
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>ref|XM_589072.2| PREDICTED: Bos taurus similar to myosin, heavy polypeptide 13,
            skeletal muscle (LOC511687), partial mRNA
          Length = 3477

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 117  cctcctcctcttccagcctc 136
            ||||||||||||||||||||
Sbjct: 3310 cctcctcctcttccagcctc 3291
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>gb|BC065536.1| Homo sapiens dystonin, mRNA (cDNA clone IMAGE:6008053), complete cds
          Length = 3570

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 117  cctcctcctcttccagcctc 136
            ||||||||||||||||||||
Sbjct: 3391 cctcctcctcttccagcctc 3372
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>ref|XM_954375.1| Neurospora crassa OR74A hypothetical protein (NCU02346.1) partial
           mRNA
          Length = 1887

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 111 ccacaccctcctcctcttcc 130
           ||||||||||||||||||||
Sbjct: 978 ccacaccctcctcctcttcc 959
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>ref|XM_331121.1| Neurospora crassa OR74A hypothetical protein (NCU02346.1) partial
           mRNA
          Length = 1887

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 111 ccacaccctcctcctcttcc 130
           ||||||||||||||||||||
Sbjct: 978 ccacaccctcctcctcttcc 959
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>ref|XM_748213.1| Aspergillus fumigatus Af293 U1 small nuclear ribonucleoprotein 70
           kDa (Afu5g13480) partial mRNA
          Length = 1188

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 124 ctcttccagcctcgtccacc 143
           ||||||||||||||||||||
Sbjct: 34  ctcttccagcctcgtccacc 53
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>gb|AC134559.5| Mus musculus BAC clone RP24-332C4 from chromosome 8, complete sequence
          Length = 180692

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 444    aagatgcatgggaggaactgagag 467
              |||||| |||||||||||||||||
Sbjct: 174206 aagatggatgggaggaactgagag 174183
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>gb|AC125181.4| Mus musculus BAC clone RP23-324L6 from chromosome 8, complete sequence
          Length = 223306

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 444   aagatgcatgggaggaactgagag 467
             |||||| |||||||||||||||||
Sbjct: 51693 aagatggatgggaggaactgagag 51670
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>emb|AL096710.8|HSDJ61B2 Human DNA sequence from clone RP1-61B2 on chromosome 6p11.2-12.3
             Contains part of the BPAG1 gene for bullous pemphigoid
             antigen 1 (230/240kD), complete sequence
          Length = 119666

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 117   cctcctcctcttccagcctc 136
             ||||||||||||||||||||
Sbjct: 71036 cctcctcctcttccagcctc 71055
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>emb|AL391144.1|ATF14F8 Arabidopsis thaliana DNA chromosome 5, BAC clone F14F8 (ESSA project)
          Length = 96892

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                             
Query: 425   tactacttctggccgcggaaagatgcatggga 456
             ||||||||||||||  |||||||||| |||||
Sbjct: 59355 tactacttctggcctaggaaagatgcttggga 59386
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>emb|CR352305.6| Zebrafish DNA sequence from clone CH211-95N4 in linkage group 17,
             complete sequence
          Length = 155030

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 117   cctcctcctcttccagcctc 136
             ||||||||||||||||||||
Sbjct: 12595 cctcctcctcttccagcctc 12614



 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 117   cctcctcctcttccagcctc 136
             ||||||||||||||||||||
Sbjct: 11216 cctcctcctcttccagcctc 11235
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>dbj|AK123594.1| Homo sapiens cDNA FLJ41600 fis, clone CTONG2026920
          Length = 2582

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 441  ggaaagatgcatgggaggaa 460
            ||||||||||||||||||||
Sbjct: 1828 ggaaagatgcatgggaggaa 1847
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>emb|BX119916.10| Zebrafish DNA sequence from clone CH211-202I5 in linkage group 11,
             complete sequence
          Length = 196164

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 442   gaaagatgcatgggaggaac 461
             ||||||||||||||||||||
Sbjct: 87358 gaaagatgcatgggaggaac 87339
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>gb|AC012181.8| Homo sapiens chromosome 16 clone RP11-325K4, complete sequence
          Length = 189712

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 441    ggaaagatgcatgggaggaa 460
              ||||||||||||||||||||
Sbjct: 123882 ggaaagatgcatgggaggaa 123863
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>gb|BT003711.1| Arabidopsis thaliana At5g15760 mRNA, complete cds
          Length = 552

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 425 tactacttctggccgcggaaagatgcatggga 456
           ||||||||||||||  |||||||||| |||||
Sbjct: 400 tactacttctggcctaggaaagatgcttggga 431
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>gb|AC007238.3| Homo sapiens BAC clone RP11-19M18 from 2, complete sequence
          Length = 169147

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 113   acaccctcctcctcttccag 132
             ||||||||||||||||||||
Sbjct: 75239 acaccctcctcctcttccag 75220
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>gb|AC067937.1|AC067937 Neurospora crassa chromosome 7, clone X11-G8, complete sequence
          Length = 43556

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 111   ccacaccctcctcctcttcc 130
             ||||||||||||||||||||
Sbjct: 20198 ccacaccctcctcctcttcc 20217
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>emb|BX908788.1| Neurospora crassa DNA linkage group VII BAC clone B23N11
          Length = 46353

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 111   ccacaccctcctcctcttcc 130
             ||||||||||||||||||||
Sbjct: 15900 ccacaccctcctcctcttcc 15919
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>dbj|AK117858.1| Arabidopsis thaliana At5g15760 mRNA for putative ribosomal protein
           3 precursor, complete cds, clone: RAFL19-02-C10
          Length = 745

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 425 tactacttctggccgcggaaagatgcatggga 456
           ||||||||||||||  |||||||||| |||||
Sbjct: 445 tactacttctggcctaggaaagatgcttggga 476
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>emb|CR388132.9| Zebrafish DNA sequence from clone DKEY-23A23 in linkage group 4, complete
              sequence
          Length = 206525

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 296    gagtacaaggtggaggtgcc 315
              ||||||||||||||||||||
Sbjct: 182188 gagtacaaggtggaggtgcc 182169
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>emb|BX088719.6| Zebrafish DNA sequence from clone CH211-207H2 in linkage group 17,
              complete sequence
          Length = 205685

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 117    cctcctcctcttccagcctc 136
              ||||||||||||||||||||
Sbjct: 178048 cctcctcctcttccagcctc 178029
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>emb|AL928628.9| Zebrafish DNA sequence from clone DKEY-5G18 in linkage group 7,
             complete sequence
          Length = 229942

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 107   ccttccacaccctcctcctcttcc 130
             ||||||||||||| ||||||||||
Sbjct: 56973 ccttccacaccctactcctcttcc 56950
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>emb|AL591469.9| Mouse DNA sequence from clone RP23-390D17 on chromosome 11, complete
             sequence
          Length = 168981

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 108   cttccacaccctcctcctct 127
             ||||||||||||||||||||
Sbjct: 20771 cttccacaccctcctcctct 20790


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,482,241
Number of Sequences: 3902068
Number of extensions: 3482241
Number of successful extensions: 102662
Number of sequences better than 10.0: 53
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 102499
Number of HSP's gapped (non-prelim): 163
length of query: 473
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 451
effective length of database: 17,147,199,772
effective search space: 7733387097172
effective search space used: 7733387097172
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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