ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet07f02 |
|---|---|
| Clone Library Name | barley_pub |
>GP46_LEIAM (P21978) Surface membrane glycoprotein GP46/M-2 precursor| Length = 476 Score = 29.6 bits (65), Expect = 3.4 Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 8/45 (17%) Frame = +3 Query: 30 RPTPC--ILQSYPKATET---LPA---ASRLSCCSIRLCTASCPA 140 RP+PC + S+P+ T PA +RL CC++ +C + PA Sbjct: 431 RPSPCASVCVSWPRERRTECACPALFDGARLRCCALVVCAGAAPA 475
>CFAD_MOUSE (P03953) Complement factor D precursor (EC 3.4.21.46) (C3| convertase activator) (Properdin factor D) (Adipsin) (28 kDa protein, adipocyte) Length = 259 Score = 29.3 bits (64), Expect = 4.4 Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 1/37 (2%) Frame = -2 Query: 108 NNRTTCSPPGVSPSLL-DRTEGCTGWGARPSANCRKP 1 N R TC SP + D EG WG+R N +KP Sbjct: 200 NRRDTCRGDSGSPLVCGDAVEGVVTWGSRVCGNGKKP 236
>JHD3C_HUMAN (Q9H3R0) JmjC domain-containing histone demethylation protein 3C| (EC 1.14.11.-) (Jumonji domain-containing protein 2C) (Gene amplified in squamous cell carcinoma 1 protein) (GASC-1 protein) Length = 1056 Score = 28.9 bits (63), Expect = 5.8 Identities = 12/38 (31%), Positives = 18/38 (47%), Gaps = 4/38 (10%) Frame = -2 Query: 288 CFGF----VVDAWLAAMLAKDDWHLSCCCLNLERLSLR 187 C+G + D WL A ++ W CC NL +L+ Sbjct: 729 CYGIPSHEICDGWLCARCKRNAWTAECCLCNLRGGALK 766
>GR64E_DROME (P83296) Probable gustatory receptor 64e| Length = 451 Score = 28.9 bits (63), Expect = 5.8 Identities = 12/19 (63%), Positives = 14/19 (73%), Gaps = 2/19 (10%) Frame = -3 Query: 110 RTTGQPARRRECLRR--FW 60 RTTG PA+RR C+ R FW Sbjct: 3 RTTGDPAKRRRCMSRIKFW 21
>MOBE_THIFE (P22901) Protein mobE| Length = 213 Score = 28.9 bits (63), Expect = 5.8 Identities = 15/49 (30%), Positives = 25/49 (51%) Frame = -1 Query: 208 SGEAVLEIHLQTARRTPLQSAGRAGQEAVHNRIEQQDNLLAAGSVSVAF 62 + +A ++ + A+ Q+ A QE HN +Q AAG ++VAF Sbjct: 74 TADATVKASAEAAKADLAQAVAAAAQEVAHNTSAKQMWQWAAGCIAVAF 122
>JHD3C_MOUSE (Q8VCD7) JmjC domain-containing histone demethylation protein 3C| (EC 1.14.11.-) (Jumonji domain-containing protein 2C) Length = 1054 Score = 28.9 bits (63), Expect = 5.8 Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 4/38 (10%) Frame = -2 Query: 288 CFGF----VVDAWLAAMLAKDDWHLSCCCLNLERLSLR 187 C+G V D WL A ++ W CC NL +L+ Sbjct: 727 CYGVPSHEVCDGWLCARCKRNAWTAECCLCNLRGGALK 764
>SNPC4_HUMAN (Q5SXM2) snRNA-activating protein complex subunit 4 (SNAPc subunit| 4) (snRNA-activating protein complex 190 kDa subunit) (SNAPc 190 kDa subunit) (Proximal sequence element-binding transcription factor alpha subunit) (PSE-binding factor alpha Length = 1469 Score = 28.5 bits (62), Expect = 7.6 Identities = 15/41 (36%), Positives = 22/41 (53%) Frame = -1 Query: 208 SGEAVLEIHLQTARRTPLQSAGRAGQEAVHNRIEQQDNLLA 86 SG++V H+Q R QS R + A+H R+ + LLA Sbjct: 707 SGDSVARSHVQWLRHRATQSGQRRWRHALHRRLLNRRLLLA 747
>TFF1_CANFA (Q863T4) Trefoil factor 1 precursor| Length = 81 Score = 28.5 bits (62), Expect = 7.6 Identities = 11/37 (29%), Positives = 22/37 (59%) Frame = -2 Query: 153 NQLEEQDKKQCTIG*NNRTTCSPPGVSPSLLDRTEGC 43 + L + ++ CT+ ++R C PG++PS + +GC Sbjct: 18 SSLAQGQQETCTVAPHHRDNCGSPGITPSQC-KDKGC 53
>UT14A_MOUSE (Q640M1) U3 small nucleolar RNA-associated protein 14 homolog A| (Juvenile spermatogonial depletion-like X-linked protein) (Jsd-like X-linked protein) Length = 767 Score = 28.5 bits (62), Expect = 7.6 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 4/48 (8%) Frame = +2 Query: 275 TKPKHRAQPINAQSAPARPAQ----PIKFSNDTERLQHINSIRKSPIG 406 TKP H +PI A+ R + P+ SN + +H +KS IG Sbjct: 720 TKPGHIIKPITAEDVDCRSSPRSDVPVMQSNPKQHSKHQKQRKKSSIG 767
>MCSP_RAT (Q64298) Sperm mitochondrial-associated cysteine-rich protein| Length = 145 Score = 28.5 bits (62), Expect = 7.6 Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 1/42 (2%) Frame = +3 Query: 33 PTPCILQSYPKATETLPAASRLSCCSIRLCTASCPA-LPADC 155 P PC LQ P ++ + CC+ ++C P PA C Sbjct: 24 PKPCCLQKSPCCPKSPCCPPKSPCCTPKVCPCPTPCPCPATC 65
>PLK3_RAT (Q9R011) Serine/threonine-protein kinase PLK3 (EC 2.7.11.21)| (Polo-like kinase 3) (PLK-3) (Cytokine-inducible serine/threonine-protein kinase) (FGF-inducible kinase) (Fragment) Length = 615 Score = 28.1 bits (61), Expect = 9.9 Identities = 14/40 (35%), Positives = 19/40 (47%) Frame = -2 Query: 189 RSIFKLREEHRCNQLEEQDKKQCTIG*NNRTTCSPPGVSP 70 +S+F R+ N EEQD C + RT+ P V P Sbjct: 318 KSLFGRRKSKNKNHSEEQDNVSCLVSGLMRTSIGHPDVRP 357
>KLK3_MACMU (P33619) Prostate-specific antigen precursor (EC 3.4.21.77) (PSA)| (Kallikrein-3) (Semenogelase) Length = 261 Score = 28.1 bits (61), Expect = 9.9 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%) Frame = -2 Query: 102 RTTCSPPGVSPSLLDRT-EGCTGWGARPSANCRKP 1 ++TCS P + D +G T WG++P A R+P Sbjct: 206 KSTCSGDSGGPLVCDGVLQGITSWGSQPCALPRRP 240
>KLK3_MACFA (Q6DT45) Prostate-specific antigen precursor (EC 3.4.21.77) (PSA)| (Kallikrein-3) (Semenogelase) Length = 261 Score = 28.1 bits (61), Expect = 9.9 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%) Frame = -2 Query: 102 RTTCSPPGVSPSLLDRT-EGCTGWGARPSANCRKP 1 ++TCS P + D +G T WG++P A R+P Sbjct: 206 KSTCSGDSGGPLVCDGVLQGITSWGSQPCALPRRP 240 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 60,527,648 Number of Sequences: 219361 Number of extensions: 1144026 Number of successful extensions: 3518 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 3391 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3515 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2570413340 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
