ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet07e06 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_188383.1| Oryza sativa (japonica cultivar-group), Ozsa8109 predicted mRNA Length = 1851 Score = 414 bits (209), Expect = e-112 Identities = 305/337 (90%) Strand = Plus / Plus Query: 117 aagccggcggccgagggcaggagctactggcggtggcacagggacgacttcttcccggag 176 ||||||||||| |||| |||||||||||||||||||| | ||| || |||||||||||| Sbjct: 40 aagccggcggcggaggcgaggagctactggcggtggcagaaggaagatttcttcccggag 99 Query: 177 ccatcgttcgcgagctggagcgcgtaccgctccgcgctggccgcgacccccgcgaggctc 236 || || |||||||||||| ||||||||||| | |||||||||||||| |||||| || || Sbjct: 100 ccgtccttcgcgagctggggcgcgtaccgcgcggcgctggccgcgacgcccgcgcggttc 159 Query: 237 cgcgaccgcttcagcggccgctccaccgacgccatctagctcggcgcgatgcggcgccgc 296 |||||||||||| ||||||||||||||||||| | ||||||||||| |||| |||||| Sbjct: 160 cgcgaccgcttcgccggccgctccaccgacgccgacgagctcggcgcgctgcgccgccgc 219 Query: 297 agcgagaacgagatgcgccgctgcctcacgtggtgggacctcacgtggttcggcttcggc 356 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 220 agcgagaacgagatgcgccgctgcctcacgtggtgggacctcacgtggttcgggttcggc 279 Query: 357 tccgtcatcggcgccggcatcttcgtgctcactggccaggaggcgcacgaccacgccggc 416 ||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||| Sbjct: 280 tccgtcatcggtgccgggatcttcgtgctcaccggccaggaggcgcacgaccacgccggc 339 Query: 417 cccgccatcgtgctatcctatatcgtctccggcctct 453 || ||||||||||| ||||| | | ||||||||||| Sbjct: 340 ccggccatcgtgctctcctacgtggcctccggcctct 376
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 414 bits (209), Expect = e-112 Identities = 305/337 (90%) Strand = Plus / Minus Query: 117 aagccggcggccgagggcaggagctactggcggtggcacagggacgacttcttcccggag 176 ||||||||||| |||| |||||||||||||||||||| | ||| || |||||||||||| Sbjct: 5984733 aagccggcggcggaggcgaggagctactggcggtggcagaaggaagatttcttcccggag 5984674 Query: 177 ccatcgttcgcgagctggagcgcgtaccgctccgcgctggccgcgacccccgcgaggctc 236 || || |||||||||||| ||||||||||| | |||||||||||||| |||||| || || Sbjct: 5984673 ccgtccttcgcgagctggggcgcgtaccgcgcggcgctggccgcgacgcccgcgcggttc 5984614 Query: 237 cgcgaccgcttcagcggccgctccaccgacgccatctagctcggcgcgatgcggcgccgc 296 |||||||||||| ||||||||||||||||||| | ||||||||||| |||| |||||| Sbjct: 5984613 cgcgaccgcttcgccggccgctccaccgacgccgacgagctcggcgcgctgcgccgccgc 5984554 Query: 297 agcgagaacgagatgcgccgctgcctcacgtggtgggacctcacgtggttcggcttcggc 356 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 5984553 agcgagaacgagatgcgccgctgcctcacgtggtgggacctcacgtggttcgggttcggc 5984494 Query: 357 tccgtcatcggcgccggcatcttcgtgctcactggccaggaggcgcacgaccacgccggc 416 ||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||| Sbjct: 5984493 tccgtcatcggtgccgggatcttcgtgctcaccggccaggaggcgcacgaccacgccggc 5984434 Query: 417 cccgccatcgtgctatcctatatcgtctccggcctct 453 || ||||||||||| ||||| | | ||||||||||| Sbjct: 5984433 ccggccatcgtgctctcctacgtggcctccggcctct 5984397
>dbj|AP002093.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0466B10 Length = 151806 Score = 414 bits (209), Expect = e-112 Identities = 305/337 (90%) Strand = Plus / Minus Query: 117 aagccggcggccgagggcaggagctactggcggtggcacagggacgacttcttcccggag 176 ||||||||||| |||| |||||||||||||||||||| | ||| || |||||||||||| Sbjct: 52621 aagccggcggcggaggcgaggagctactggcggtggcagaaggaagatttcttcccggag 52562 Query: 177 ccatcgttcgcgagctggagcgcgtaccgctccgcgctggccgcgacccccgcgaggctc 236 || || |||||||||||| ||||||||||| | |||||||||||||| |||||| || || Sbjct: 52561 ccgtccttcgcgagctggggcgcgtaccgcgcggcgctggccgcgacgcccgcgcggttc 52502 Query: 237 cgcgaccgcttcagcggccgctccaccgacgccatctagctcggcgcgatgcggcgccgc 296 |||||||||||| ||||||||||||||||||| | ||||||||||| |||| |||||| Sbjct: 52501 cgcgaccgcttcgccggccgctccaccgacgccgacgagctcggcgcgctgcgccgccgc 52442 Query: 297 agcgagaacgagatgcgccgctgcctcacgtggtgggacctcacgtggttcggcttcggc 356 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 52441 agcgagaacgagatgcgccgctgcctcacgtggtgggacctcacgtggttcgggttcggc 52382 Query: 357 tccgtcatcggcgccggcatcttcgtgctcactggccaggaggcgcacgaccacgccggc 416 ||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||| Sbjct: 52381 tccgtcatcggtgccgggatcttcgtgctcaccggccaggaggcgcacgaccacgccggc 52322 Query: 417 cccgccatcgtgctatcctatatcgtctccggcctct 453 || ||||||||||| ||||| | | ||||||||||| Sbjct: 52321 ccggccatcgtgctctcctacgtggcctccggcctct 52285
>dbj|AP002092.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0031E09 Length = 176349 Score = 414 bits (209), Expect = e-112 Identities = 305/337 (90%) Strand = Plus / Minus Query: 117 aagccggcggccgagggcaggagctactggcggtggcacagggacgacttcttcccggag 176 ||||||||||| |||| |||||||||||||||||||| | ||| || |||||||||||| Sbjct: 9090 aagccggcggcggaggcgaggagctactggcggtggcagaaggaagatttcttcccggag 9031 Query: 177 ccatcgttcgcgagctggagcgcgtaccgctccgcgctggccgcgacccccgcgaggctc 236 || || |||||||||||| ||||||||||| | |||||||||||||| |||||| || || Sbjct: 9030 ccgtccttcgcgagctggggcgcgtaccgcgcggcgctggccgcgacgcccgcgcggttc 8971 Query: 237 cgcgaccgcttcagcggccgctccaccgacgccatctagctcggcgcgatgcggcgccgc 296 |||||||||||| ||||||||||||||||||| | ||||||||||| |||| |||||| Sbjct: 8970 cgcgaccgcttcgccggccgctccaccgacgccgacgagctcggcgcgctgcgccgccgc 8911 Query: 297 agcgagaacgagatgcgccgctgcctcacgtggtgggacctcacgtggttcggcttcggc 356 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 8910 agcgagaacgagatgcgccgctgcctcacgtggtgggacctcacgtggttcgggttcggc 8851 Query: 357 tccgtcatcggcgccggcatcttcgtgctcactggccaggaggcgcacgaccacgccggc 416 ||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||| Sbjct: 8850 tccgtcatcggtgccgggatcttcgtgctcaccggccaggaggcgcacgaccacgccggc 8791 Query: 417 cccgccatcgtgctatcctatatcgtctccggcctct 453 || ||||||||||| ||||| | | ||||||||||| Sbjct: 8790 ccggccatcgtgctctcctacgtggcctccggcctct 8754
>dbj|AK099094.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023019B18, full insert sequence Length = 2113 Score = 414 bits (209), Expect = e-112 Identities = 305/337 (90%) Strand = Plus / Plus Query: 117 aagccggcggccgagggcaggagctactggcggtggcacagggacgacttcttcccggag 176 ||||||||||| |||| |||||||||||||||||||| | ||| || |||||||||||| Sbjct: 102 aagccggcggcggaggcgaggagctactggcggtggcagaaggaagatttcttcccggag 161 Query: 177 ccatcgttcgcgagctggagcgcgtaccgctccgcgctggccgcgacccccgcgaggctc 236 || || |||||||||||| ||||||||||| | |||||||||||||| |||||| || || Sbjct: 162 ccgtccttcgcgagctggggcgcgtaccgcgcggcgctggccgcgacgcccgcgcggttc 221 Query: 237 cgcgaccgcttcagcggccgctccaccgacgccatctagctcggcgcgatgcggcgccgc 296 |||||||||||| ||||||||||||||||||| | ||||||||||| |||| |||||| Sbjct: 222 cgcgaccgcttcgccggccgctccaccgacgccgacgagctcggcgcgctgcgccgccgc 281 Query: 297 agcgagaacgagatgcgccgctgcctcacgtggtgggacctcacgtggttcggcttcggc 356 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 282 agcgagaacgagatgcgccgctgcctcacgtggtgggacctcacgtggttcgggttcggc 341 Query: 357 tccgtcatcggcgccggcatcttcgtgctcactggccaggaggcgcacgaccacgccggc 416 ||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||| Sbjct: 342 tccgtcatcggtgccgggatcttcgtgctcaccggccaggaggcgcacgaccacgccggc 401 Query: 417 cccgccatcgtgctatcctatatcgtctccggcctct 453 || ||||||||||| ||||| | | ||||||||||| Sbjct: 402 ccggccatcgtgctctcctacgtggcctccggcctct 438
>dbj|AK061588.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-021-B08, full insert sequence Length = 2067 Score = 414 bits (209), Expect = e-112 Identities = 305/337 (90%) Strand = Plus / Plus Query: 117 aagccggcggccgagggcaggagctactggcggtggcacagggacgacttcttcccggag 176 ||||||||||| |||| |||||||||||||||||||| | ||| || |||||||||||| Sbjct: 143 aagccggcggcggaggcgaggagctactggcggtggcagaaggaagatttcttcccggag 202 Query: 177 ccatcgttcgcgagctggagcgcgtaccgctccgcgctggccgcgacccccgcgaggctc 236 || || |||||||||||| ||||||||||| | |||||||||||||| |||||| || || Sbjct: 203 ccgtccttcgcgagctggggcgcgtaccgcgcggcgctggccgcgacgcccgcgcggttc 262 Query: 237 cgcgaccgcttcagcggccgctccaccgacgccatctagctcggcgcgatgcggcgccgc 296 |||||||||||| ||||||||||||||||||| | ||||||||||| |||| |||||| Sbjct: 263 cgcgaccgcttcgccggccgctccaccgacgccgacgagctcggcgcgctgcgccgccgc 322 Query: 297 agcgagaacgagatgcgccgctgcctcacgtggtgggacctcacgtggttcggcttcggc 356 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 323 agcgagaacgagatgcgccgctgcctcacgtggtgggacctcacgtggttcgggttcggc 382 Query: 357 tccgtcatcggcgccggcatcttcgtgctcactggccaggaggcgcacgaccacgccggc 416 ||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||| Sbjct: 383 tccgtcatcggtgccgggatcttcgtgctcaccggccaggaggcgcacgaccacgccggc 442 Query: 417 cccgccatcgtgctatcctatatcgtctccggcctct 453 || ||||||||||| ||||| | | ||||||||||| Sbjct: 443 ccggccatcgtgctctcctacgtggcctccggcctct 479
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 115 bits (58), Expect = 1e-22 Identities = 109/126 (86%) Strand = Plus / Minus Query: 324 acgtggtgggacctcacgtggttcggcttcggctccgtcatcggcgccggcatcttcgtg 383 ||||||||||||||| | ||||||||| ||||| |||||||||||||||||||||||||| Sbjct: 25997452 acgtggtgggacctcgcctggttcggcgtcggcgccgtcatcggcgccggcatcttcgtg 25997393 Query: 384 ctcactggccaggaggcgcacgaccacgccggccccgccatcgtgctatcctatatcgtc 443 ||||| || |||||||| ||| ||||||||||||| ||||||| ||||| |||| Sbjct: 25997392 ctcacggggcaggaggccagggacgccgccggccccgccgtcgtgctctcctacgccgtc 25997333 Query: 444 tccggc 449 |||||| Sbjct: 25997332 tccggc 25997327 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 180 tcgttcgcgagctggagcgcgtac 203 ||||||||||||||| |||||||| Sbjct: 25997596 tcgttcgcgagctggggcgcgtac 25997573
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 115 bits (58), Expect = 1e-22 Identities = 109/126 (86%) Strand = Plus / Minus Query: 324 acgtggtgggacctcacgtggttcggcttcggctccgtcatcggcgccggcatcttcgtg 383 ||||||||||||||| | ||||||||| ||||| |||||||||||||||||||||||||| Sbjct: 25925628 acgtggtgggacctcgcctggttcggcgtcggcgccgtcatcggcgccggcatcttcgtg 25925569 Query: 384 ctcactggccaggaggcgcacgaccacgccggccccgccatcgtgctatcctatatcgtc 443 ||||| || |||||||| ||| ||||||||||||| ||||||| ||||| |||| Sbjct: 25925568 ctcacggggcaggaggccagggacgccgccggccccgccgtcgtgctctcctacgccgtc 25925509 Query: 444 tccggc 449 |||||| Sbjct: 25925508 tccggc 25925503 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 180 tcgttcgcgagctggagcgcgtac 203 ||||||||||||||| |||||||| Sbjct: 25925772 tcgttcgcgagctggggcgcgtac 25925749
>emb|AL713940.4|CNS07YPM Oryza sativa chromosome 12, . BAC OJ1327_A12 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 161806 Score = 115 bits (58), Expect = 1e-22 Identities = 109/126 (86%) Strand = Plus / Plus Query: 324 acgtggtgggacctcacgtggttcggcttcggctccgtcatcggcgccggcatcttcgtg 383 ||||||||||||||| | ||||||||| ||||| |||||||||||||||||||||||||| Sbjct: 114219 acgtggtgggacctcgcctggttcggcgtcggcgccgtcatcggcgccggcatcttcgtg 114278 Query: 384 ctcactggccaggaggcgcacgaccacgccggccccgccatcgtgctatcctatatcgtc 443 ||||| || |||||||| ||| ||||||||||||| ||||||| ||||| |||| Sbjct: 114279 ctcacggggcaggaggccagggacgccgccggccccgccgtcgtgctctcctacgccgtc 114338 Query: 444 tccggc 449 |||||| Sbjct: 114339 tccggc 114344 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 180 tcgttcgcgagctggagcgcgtac 203 ||||||||||||||| |||||||| Sbjct: 114075 tcgttcgcgagctggggcgcgtac 114098
>gb|AC147427.2| Oryza sativa chromosome 3 B1394A07 genomic sequence, complete sequence Length = 175704 Score = 113 bits (57), Expect = 5e-22 Identities = 75/81 (92%) Strand = Plus / Plus Query: 320 cctcacgtggtgggacctcacgtggttcggcttcggctccgtcatcggcgccggcatctt 379 |||||||||||||||||| ||||||||||| ||||| |||||||||||||||| ||||| Sbjct: 50479 cctcacgtggtgggacctggcgtggttcggcgtcggcgccgtcatcggcgccgggatctt 50538 Query: 380 cgtgctcactggccaggaggc 400 ||||||||| ||||||||||| Sbjct: 50539 cgtgctcaccggccaggaggc 50559
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 113 bits (57), Expect = 5e-22 Identities = 75/81 (92%) Strand = Plus / Minus Query: 320 cctcacgtggtgggacctcacgtggttcggcttcggctccgtcatcggcgccggcatctt 379 |||||||||||||||||| ||||||||||| ||||| |||||||||||||||| ||||| Sbjct: 24585381 cctcacgtggtgggacctggcgtggttcggcgtcggcgccgtcatcggcgccgggatctt 24585322 Query: 380 cgtgctcactggccaggaggc 400 ||||||||| ||||||||||| Sbjct: 24585321 cgtgctcaccggccaggaggc 24585301
>emb|AL732379.5|CNS08C92 Oryza sativa chromosome 3, . BAC OSJNBa0025B02 of library OSJNBa from chromosome 3 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 136470 Score = 113 bits (57), Expect = 5e-22 Identities = 75/81 (92%) Strand = Plus / Minus Query: 320 cctcacgtggtgggacctcacgtggttcggcttcggctccgtcatcggcgccggcatctt 379 |||||||||||||||||| ||||||||||| ||||| |||||||||||||||| ||||| Sbjct: 17426 cctcacgtggtgggacctggcgtggttcggcgtcggcgccgtcatcggcgccgggatctt 17367 Query: 380 cgtgctcactggccaggaggc 400 ||||||||| ||||||||||| Sbjct: 17366 cgtgctcaccggccaggaggc 17346
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 113 bits (57), Expect = 5e-22 Identities = 75/81 (92%) Strand = Plus / Minus Query: 320 cctcacgtggtgggacctcacgtggttcggcttcggctccgtcatcggcgccggcatctt 379 |||||||||||||||||| ||||||||||| ||||| |||||||||||||||| ||||| Sbjct: 24502850 cctcacgtggtgggacctggcgtggttcggcgtcggcgccgtcatcggcgccgggatctt 24502791 Query: 380 cgtgctcactggccaggaggc 400 ||||||||| ||||||||||| Sbjct: 24502790 cgtgctcaccggccaggaggc 24502770
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 58.0 bits (29), Expect = 3e-05 Identities = 50/57 (87%) Strand = Plus / Plus Query: 346 tcggcttcggctccgtcatcggcgccggcatcttcgtgctcactggccaggaggcgc 402 |||| |||||||||||| ||||| |||| | ||||||||||| ||||||||||||| Sbjct: 19904252 tcgggttcggctccgtcgtcggctccggggtgttcgtgctcaccggccaggaggcgc 19904308 Score = 58.0 bits (29), Expect = 3e-05 Identities = 32/33 (96%) Strand = Plus / Plus Query: 162 gacttcttcccggagccatcgttcgcgagctgg 194 ||||||||||||||||| ||||||||||||||| Sbjct: 19904068 gacttcttcccggagccgtcgttcgcgagctgg 19904100
>dbj|AP004818.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0551A03 Length = 173027 Score = 58.0 bits (29), Expect = 3e-05 Identities = 50/57 (87%) Strand = Plus / Plus Query: 346 tcggcttcggctccgtcatcggcgccggcatcttcgtgctcactggccaggaggcgc 402 |||| |||||||||||| ||||| |||| | ||||||||||| ||||||||||||| Sbjct: 171297 tcgggttcggctccgtcgtcggctccggggtgttcgtgctcaccggccaggaggcgc 171353 Score = 58.0 bits (29), Expect = 3e-05 Identities = 32/33 (96%) Strand = Plus / Plus Query: 162 gacttcttcccggagccatcgttcgcgagctgg 194 ||||||||||||||||| ||||||||||||||| Sbjct: 171113 gacttcttcccggagccgtcgttcgcgagctgg 171145
>dbj|AP004809.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:B1018E06 Length = 178499 Score = 58.0 bits (29), Expect = 3e-05 Identities = 50/57 (87%) Strand = Plus / Plus Query: 346 tcggcttcggctccgtcatcggcgccggcatcttcgtgctcactggccaggaggcgc 402 |||| |||||||||||| ||||| |||| | ||||||||||| ||||||||||||| Sbjct: 42592 tcgggttcggctccgtcgtcggctccggggtgttcgtgctcaccggccaggaggcgc 42648 Score = 58.0 bits (29), Expect = 3e-05 Identities = 32/33 (96%) Strand = Plus / Plus Query: 162 gacttcttcccggagccatcgttcgcgagctgg 194 ||||||||||||||||| ||||||||||||||| Sbjct: 42408 gacttcttcccggagccgtcgttcgcgagctgg 42440
>dbj|AK063382.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-114-G03, full insert sequence Length = 2250 Score = 58.0 bits (29), Expect = 3e-05 Identities = 50/57 (87%) Strand = Plus / Plus Query: 346 tcggcttcggctccgtcatcggcgccggcatcttcgtgctcactggccaggaggcgc 402 |||| |||||||||||| ||||| |||| | ||||||||||| ||||||||||||| Sbjct: 394 tcgggttcggctccgtcgtcggctccggggtgttcgtgctcaccggccaggaggcgc 450 Score = 58.0 bits (29), Expect = 3e-05 Identities = 32/33 (96%) Strand = Plus / Plus Query: 162 gacttcttcccggagccatcgttcgcgagctgg 194 ||||||||||||||||| ||||||||||||||| Sbjct: 210 gacttcttcccggagccgtcgttcgcgagctgg 242
>gb|AE005796.1| Caulobacter crescentus CB15 section 122 of 359 of the complete genome Length = 14750 Score = 56.0 bits (28), Expect = 1e-04 Identities = 69/80 (86%), Gaps = 2/80 (2%) Strand = Plus / Minus Query: 352 tcggctccgtcatcggcgccggcatcttcgtgctcactggccaggaggcgcacgacc-ac 410 ||||| || ||||||||||||||||||||||||| || || |||| ||| | || || || Sbjct: 2410 tcggcgccatcatcggcgccggcatcttcgtgctgacgggtcaggtggc-ctcggccaac 2352 Query: 411 gccggccccgccatcgtgct 430 ||||||||||||||| |||| Sbjct: 2351 gccggccccgccatcatgct 2332
>gb|AE012284.1| Xanthomonas campestris pv. campestris str. ATCC 33913, section 192 of 460 of the complete genome Length = 10204 Score = 56.0 bits (28), Expect = 1e-04 Identities = 58/68 (85%) Strand = Plus / Minus Query: 363 atcggcgccggcatcttcgtgctcactggccaggaggcgcacgaccacgccggccccgcc 422 ||||||| ||||||||||||| |||| ||||||| ||| |||||| |||||||| || Sbjct: 7730 atcggcggcggcatcttcgtgatcaccggccaggccgcggccgaccatgccggcccggcg 7671 Query: 423 atcgtgct 430 |||||||| Sbjct: 7670 atcgtgct 7663
>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome Length = 5148708 Score = 56.0 bits (28), Expect = 1e-04 Identities = 58/68 (85%) Strand = Plus / Plus Query: 363 atcggcgccggcatcttcgtgctcactggccaggaggcgcacgaccacgccggccccgcc 422 ||||||| ||||||||||||| |||| ||||||| ||| |||||| |||||||| || Sbjct: 2858851 atcggcggcggcatcttcgtgatcaccggccaggccgcggccgaccatgccggcccggcg 2858910 Query: 423 atcgtgct 430 |||||||| Sbjct: 2858911 atcgtgct 2858918
>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome Length = 5178466 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Minus Query: 363 atcggcgccggcatcttcgtgctcactggccagg 396 ||||||||||||||||||||||| || ||||||| Sbjct: 2136195 atcggcgccggcatcttcgtgctgaccggccagg 2136162 Score = 48.1 bits (24), Expect = 0.025 Identities = 48/56 (85%) Strand = Plus / Minus Query: 363 atcggcgccggcatcttcgtgctcactggccaggaggcgcacgaccacgccggccc 418 ||||||| |||||||||||| |||| ||||||| |||| |||||| |||||||| Sbjct: 2134676 atcggcggcggcatcttcgtcatcaccggccaggcggcggccgaccatgccggccc 2134621
>emb|BX572594.1| Rhodopseudomonas palustris CGA009 complete genome; segment 2/16 Length = 348971 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Minus Query: 361 tcatcggcgccggcatcttcgtgctcactggcca 394 ||||||| |||||||||||||||||||| ||||| Sbjct: 305210 tcatcggtgccggcatcttcgtgctcaccggcca 305177
>gb|AE011817.1| Xanthomonas axonopodis pv. citri str. 306, section 195 of 469 of the complete genome Length = 10715 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Minus Query: 363 atcggcgccggcatcttcgtgctcactggccagg 396 ||||||||||||||||||||||| || ||||||| Sbjct: 8297 atcggcgccggcatcttcgtgctgaccggccagg 8264 Score = 40.1 bits (20), Expect = 6.1 Identities = 47/56 (83%) Strand = Plus / Minus Query: 363 atcggcgccggcatcttcgtgctcactggccaggaggcgcacgaccacgccggccc 418 ||||||| |||||||||||| |||| ||||| | |||| |||||| |||||||| Sbjct: 6778 atcggcggcggcatcttcgtcatcaccggccaagcggcggccgaccatgccggccc 6723
>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence Length = 3716413 Score = 44.1 bits (22), Expect = 0.39 Identities = 31/34 (91%) Strand = Plus / Plus Query: 352 tcggctccgtcatcggcgccggcatcttcgtgct 385 ||||| || |||||||| |||||||||||||||| Sbjct: 1703876 tcggcgccatcatcggcaccggcatcttcgtgct 1703909
>gb|AF033584.1|AF033584 Giardia intestinalis variant-specific surface protein VSP417-3/A-II (vsp417-3/A-II) gene, complete cds Length = 2769 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Minus Query: 78 atggcgcccgtggagaggccgc 99 |||||||||||||||||||||| Sbjct: 2555 atggcgcccgtggagaggccgc 2534
>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence Length = 3694126 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 361 tcatcggcgccggcatcttcgtgct 385 |||||||| |||||||||||||||| Sbjct: 3572434 tcatcggcaccggcatcttcgtgct 3572458
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence Length = 3510148 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 361 tcatcggcgccggcatcttcgtgct 385 |||||||| |||||||||||||||| Sbjct: 3400470 tcatcggcaccggcatcttcgtgct 3400446
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 361 tcatcggcgccggcatcttcgtgct 385 |||||||| |||||||||||||||| Sbjct: 439482 tcatcggcaccggcatcttcgtgct 439458
>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence Length = 4895836 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 353 cggctccgtcatcggcgccggcatc 377 |||| |||||||||||||||||||| Sbjct: 1506547 cggcaccgtcatcggcgccggcatc 1506523
>gb|BT009427.1| Triticum aestivum clone wlmk1.pk0030.f2:fis, full insert mRNA sequence Length = 1973 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 362 catcggcgccggcatcttcgt 382 ||||||||||||||||||||| Sbjct: 250 catcggcgccggcatcttcgt 270
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 361 tcatcggcgccggcatcttcgtgct 385 |||||||| |||||||||||||||| Sbjct: 249308 tcatcggcaccggcatcttcgtgct 249284
>gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome Length = 3304561 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 361 tcatcggcgccggcatcttcgtgct 385 |||||||| |||||||||||||||| Sbjct: 346283 tcatcggcaccggcatcttcgtgct 346259
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence Length = 3809201 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 361 tcatcggcgccggcatcttcgtgct 385 |||||||| |||||||||||||||| Sbjct: 242707 tcatcggcaccggcatcttcgtgct 242683
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 42.1 bits (21), Expect = 1.5 Identities = 33/37 (89%) Strand = Plus / Minus Query: 352 tcggctccgtcatcggcgccggcatcttcgtgctcac 388 ||||| || |||||||| ||||||| ||||||||||| Sbjct: 3588205 tcggcgccatcatcggcaccggcattttcgtgctcac 3588169
>gb|CP000148.1| Geobacter metallireducens GS-15, complete genome Length = 3997420 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 355 gctccgtcatcggcgccggc 374 |||||||||||||||||||| Sbjct: 3628527 gctccgtcatcggcgccggc 3628546
>gb|AC009394.5| Drosophila melanogaster clone BACR03J17, complete sequence Length = 199043 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 297 agcgagaacgagatgcgccg 316 |||||||||||||||||||| Sbjct: 131859 agcgagaacgagatgcgccg 131878
>ref|XM_322685.1| Neurospora crassa OR74A predicted protein (NCU03428.1) partial mRNA Length = 1278 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 358 ccgtcatcggcgccggcatc 377 |||||||||||||||||||| Sbjct: 824 ccgtcatcggcgccggcatc 843
>ref|XM_951621.1| Neurospora crassa OR74A hypothetical protein (NCU03428.1) partial mRNA Length = 1278 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 358 ccgtcatcggcgccggcatc 377 |||||||||||||||||||| Sbjct: 824 ccgtcatcggcgccggcatc 843
>gb|AC129017.4| Mus musculus BAC clone RP24-414A24 from chromosome 15, complete sequence Length = 153547 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 12 tcctccatttccagtccaca 31 |||||||||||||||||||| Sbjct: 51627 tcctccatttccagtccaca 51608
>gb|AC138087.17| Medicago truncatula clone mth2-22p8, complete sequence Length = 130194 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 356 ctccgtcatcggcgccggca 375 |||||||||||||||||||| Sbjct: 127831 ctccgtcatcggcgccggca 127850
>emb|AL391724.7| Human DNA sequence from clone RP11-350A18 on chromosome 13 Contains a novel gene, complete sequence Length = 141628 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 19 tttccagtccacaccaaggc 38 |||||||||||||||||||| Sbjct: 115021 tttccagtccacaccaaggc 115002
>emb|BX640445.1| Bordetella bronchiseptica strain RB50, complete genome; segment 9/16 Length = 348706 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 358 ccgtcatcggcgccggcatc 377 |||||||||||||||||||| Sbjct: 159949 ccgtcatcggcgccggcatc 159930
>emb|BX640431.1| Bordetella parapertussis strain 12822, complete genome; segment 9/14 Length = 347894 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 358 ccgtcatcggcgccggcatc 377 |||||||||||||||||||| Sbjct: 132342 ccgtcatcggcgccggcatc 132361
>emb|AL939126.1|SCO939126 Streptomyces coelicolor A3(2) complete genome; segment 23/29 Length = 295150 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 359 cgtcatcggcgccggcatcttcgt 382 |||||||||| ||||||||||||| Sbjct: 13064 cgtcatcggcaccggcatcttcgt 13087
>emb|AL669985.1|NC43E3 Neurospora crassa DNA linkage group II Cosmid clone 43E3 Length = 42057 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 358 ccgtcatcggcgccggcatc 377 |||||||||||||||||||| Sbjct: 39255 ccgtcatcggcgccggcatc 39274
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome Length = 4967148 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 353 cggctccgtcatcggcgccg 372 |||||||||||||||||||| Sbjct: 947784 cggctccgtcatcggcgccg 947765
>gb|S77710.1|S77710S1 Ifi54=interferon-alpha regulated gene [mice, Genomic, 654 nt, segment 1 of 2] Length = 654 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 375 atcttcgtgctcactggcca 394 |||||||||||||||||||| Sbjct: 521 atcttcgtgctcactggcca 540
>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome Length = 4352825 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 364 tcggcgccggcatcttcgtg 383 |||||||||||||||||||| Sbjct: 2844978 tcggcgccggcatcttcgtg 2844997
>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome Length = 2909809 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 362 catcggcgccggcatcttcgtgct 385 ||||||||||||||| |||||||| Sbjct: 2634583 catcggcgccggcattttcgtgct 2634560
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 361 tcatcggcgccggcatcttc 380 |||||||||||||||||||| Sbjct: 8699250 tcatcggcgccggcatcttc 8699231
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 362 catcggcgccggcatcttcg 381 |||||||||||||||||||| Sbjct: 3764550 catcggcgccggcatcttcg 3764569
>gb|AE004983.1| Halobacterium sp. NRC-1 section 14 of 170 of the complete genome Length = 11606 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 363 atcggcgccggcatcttcgtgctc 386 ||||| |||||||||||||||||| Sbjct: 7727 atcggggccggcatcttcgtgctc 7750
>gb|AE003721.3| Drosophila melanogaster chromosome 3R, section 59 of 118 of the complete sequence Length = 224889 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 297 agcgagaacgagatgcgccg 316 |||||||||||||||||||| Sbjct: 152353 agcgagaacgagatgcgccg 152372
>gb|AE014295.3| Bifidobacterium longum NCC2705, complete genome Length = 2256640 Score = 40.1 bits (20), Expect = 6.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 361 tcatcggcgccggcatcttcgtgctcac 388 |||||||| |||| |||||||||||||| Sbjct: 998309 tcatcggcaccggtatcttcgtgctcac 998336 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,482,076 Number of Sequences: 3902068 Number of extensions: 2482076 Number of successful extensions: 52966 Number of sequences better than 10.0: 54 Number of HSP's better than 10.0 without gapping: 54 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 50780 Number of HSP's gapped (non-prelim): 2182 length of query: 453 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 431 effective length of database: 17,147,199,772 effective search space: 7390443101732 effective search space used: 7390443101732 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
