ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baet07e03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1DACT1_HUMAN (Q9NYF0) Dapper homolog 1 (hDPR1) (Heptacellular car... 32 0.63
2AFR_ARATH (Q8LAW2) Protein AFR (Protein ATTENUATED FAR-RED RESPO... 29 4.1
3DACT1_MOUSE (Q8R4A3) Dapper homolog 1 (MDpr1) (Frodo) (Thymus-ex... 28 5.4
4ISPE_COREF (Q8FQZ4) 4-diphosphocytidyl-2-C-methyl-D-erythritol k... 28 5.4
5DNAK_PAVLU (P30722) Chaperone protein dnaK (Heat shock protein 7... 28 5.4
6APR2_HUMAN (Q9Y5M1) Apoptosis-related protein 2 (APR-2) 28 9.2

>DACT1_HUMAN (Q9NYF0) Dapper homolog 1 (hDPR1) (Heptacellular carcinoma novel|
           gene 3 protein)
          Length = 836

 Score = 31.6 bits (70), Expect = 0.63
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = -1

Query: 126 DPCGTRARQSTATSSGIPGMRSTWSASHPWT--RLFGFIIA 10
           D CG     +  T S +P   S WSASHP +  ++ G+I++
Sbjct: 304 DICGGSELDAVKTDSSLPSPSSLWSASHPSSSKKMDGYILS 344



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>AFR_ARATH (Q8LAW2) Protein AFR (Protein ATTENUATED FAR-RED RESPONSE)|
          Length = 372

 Score = 28.9 bits (63), Expect = 4.1
 Identities = 14/27 (51%), Positives = 18/27 (66%), Gaps = 3/27 (11%)
 Frame = +2

Query: 65  LIPGMPDDVAVDCLARVP---HGSYRS 136
           LI G+P+D+A  CL R+P   H  YRS
Sbjct: 28  LISGLPNDIAELCLLRLPYPYHALYRS 54



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>DACT1_MOUSE (Q8R4A3) Dapper homolog 1 (MDpr1) (Frodo) (Thymus-expressed novel|
           gene 3 protein)
          Length = 778

 Score = 28.5 bits (62), Expect = 5.4
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = -1

Query: 126 DPCGTRARQSTATSSGIPGMRSTWSASHPWT--RLFGFIIA 10
           D C      +T T + +P   S WSASHP +  ++ G+I++
Sbjct: 260 DICIGSELNATKTDNSLPSPSSLWSASHPASSKKMDGYILS 300



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>ISPE_COREF (Q8FQZ4) 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (EC|
           2.7.1.148) (CMK)
           (4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol
           kinase)
          Length = 315

 Score = 28.5 bits (62), Expect = 5.4
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +3

Query: 48  RPTTLTSSRGCPTTSPSTAWRA 113
           R  T+T  RG PTT  + AWRA
Sbjct: 58  RQLTVTGPRGVPTTPDNLAWRA 79



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>DNAK_PAVLU (P30722) Chaperone protein dnaK (Heat shock protein 70) (Heat shock|
           70 kDa protein) (HSP70)
          Length = 629

 Score = 28.5 bits (62), Expect = 5.4
 Identities = 15/32 (46%), Positives = 19/32 (59%)
 Frame = +3

Query: 30  AVSRGGRPTTLTSSRGCPTTSPSTAWRASRTD 125
           AV  GG+PT +T+S G  TT+PS    A   D
Sbjct: 17  AVMEGGKPTVITNSEG-GTTTPSVVAYAKNGD 47



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>APR2_HUMAN (Q9Y5M1) Apoptosis-related protein 2 (APR-2)|
          Length = 114

 Score = 27.7 bits (60), Expect = 9.2
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +3

Query: 24  QRAVSRGGRPTTLTSSRGCPTTSPSTAW 107
           Q A  R GRP+    ++ C    P+T W
Sbjct: 85  QGATERSGRPSVQAQAQACENLVPATVW 112


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.293    0.120    0.320 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,469,698
Number of Sequences: 219361
Number of extensions: 230375
Number of successful extensions: 721
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 674
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 718
length of database: 80,573,946
effective HSP length: 21
effective length of database: 75,967,365
effective search space used: 1823216760
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 17 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 44 (21.6 bits)
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